RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 TMPOP42166 694 aaKnown RBP12.67□□□□□ -0.38
LIMA1-211ENST00000552338 TCP11L2Q8N4U5 519 aa12.67□□□□□ -0.38
LIMA1-211ENST00000552338 PHACTR3Q96KR7 559 aa12.67□□□□□ -0.38
LIMA1-211ENST00000552338 C8orf37Q96NL8 207 aa12.67□□□□□ -0.38
LIMA1-211ENST00000552338 NLRP2Q9NX02 1062 aa12.67□□□□□ -0.38
LIMA1-211ENST00000552338 OVOS2A0A0G2JMS6 1433 aa12.67□□□□□ -0.38
LIMA1-211ENST00000552338 APAF1O14727 1248 aa12.66□□□□□ -0.38
LIMA1-211ENST00000552338 NEFMP07197 916 aa12.66□□□□□ -0.38
LIMA1-211ENST00000552338 NFE2L2Q16236 605 aa12.66□□□□□ -0.38
LIMA1-211ENST00000552338 GAS2L2Q8NHY3 880 aa12.66□□□□□ -0.38
LIMA1-211ENST00000552338 USP21Q9UK80 565 aa12.66□□□□□ -0.38
LIMA1-211ENST00000552338 MEGF6O75095 1541 aa12.66□□□□□ -0.38
LIMA1-211ENST00000552338 AFF2P51816 1311 aa12.65□□□□□ -0.38
LIMA1-211ENST00000552338 ZBED9Q6R2W3 1325 aa12.65□□□□□ -0.38
LIMA1-211ENST00000552338 IL2RBP14784 551 aa12.65□□□□□ -0.38
LIMA1-211ENST00000552338 TATP17735 454 aaPredicted RBP12.65□□□□□ -0.38
LIMA1-211ENST00000552338 PLEKHO1Q53GL0 409 aaPredicted RBP12.65□□□□□ -0.38
LIMA1-211ENST00000552338 RAPGEF4Q8WZA2 1011 aa12.65□□□□□ -0.38
LIMA1-211ENST00000552338 STRN4Q9NRL3 753 aa12.65□□□□□ -0.38
LIMA1-211ENST00000552338 TRPC5Q9UL62 973 aaPredicted RBP12.65□□□□□ -0.38
LIMA1-211ENST00000552338 GLI3P10071 1580 aa12.64□□□□□ -0.39
LIMA1-211ENST00000552338 MAPK8IP3Q9UPT6 1336 aa12.64□□□□□ -0.39
LIMA1-211ENST00000552338 THSD7AQ9UPZ6 1657 aa12.64□□□□□ -0.39
LIMA1-211ENST00000552338 MTHFSDQ2M296 383 aaKnown RBP12.64□□□□□ -0.39
LIMA1-211ENST00000552338 MEX3CQ5U5Q3 659 aaKnown RBP12.64□□□□□ -0.39
LIMA1-211ENST00000552338 CCDC146Q8IYE0 955 aa12.64□□□□□ -0.39
LIMA1-211ENST00000552338 USHBP1Q8N6Y0 703 aa12.64□□□□□ -0.39
LIMA1-211ENST00000552338 SCN11AQ9UI33 1791 aa12.64□□□□□ -0.39
LIMA1-211ENST00000552338 NKX1-1Q15270 411 aaPredicted RBP12.63□□□□□ -0.39
LIMA1-211ENST00000552338 ZNF772Q68DY9 489 aaPredicted RBP12.63□□□□□ -0.39
LIMA1-211ENST00000552338 GJD4Q96KN9 370 aaPredicted RBP12.63□□□□□ -0.39
LIMA1-211ENST00000552338 TRIM35Q9UPQ4 493 aa12.63□□□□□ -0.39
LIMA1-211ENST00000552338 CEMIPQ8WUJ3 1361 aa12.62□□□□□ -0.39
LIMA1-211ENST00000552338 PDE3BQ13370 1112 aa12.62□□□□□ -0.39
LIMA1-211ENST00000552338 AKAP4Q5JQC9 854 aa12.62□□□□□ -0.39
LIMA1-211ENST00000552338 WDR63Q8IWG1 891 aa12.62□□□□□ -0.39
LIMA1-211ENST00000552338 WWC1Q8IX03 1113 aa12.62□□□□□ -0.39
LIMA1-211ENST00000552338 SPG7Q9UQ90 795 aa12.62□□□□□ -0.39
LIMA1-211ENST00000552338 LRRC37A3O60309 1634 aa12.62□□□□□ -0.39
LIMA1-211ENST00000552338 RIPK4P57078 832 aa12.61□□□□□ -0.39
LIMA1-211ENST00000552338 HNRNPUQ00839 825 aaKnown RBP eCLIP12.61□□□□□ -0.39
LIMA1-211ENST00000552338 LMOD3Q0VAK6 560 aa12.61□□□□□ -0.39
LIMA1-211ENST00000552338 ZCRB1Q8TBF4 217 aaKnown RBP12.61□□□□□ -0.39
LIMA1-211ENST00000552338 SIPA1L3O60292 1781 aaPredicted RBP12.61□□□□□ -0.39
LIMA1-211ENST00000552338 IL16Q14005 1332 aa12.61□□□□□ -0.39
LIMA1-211ENST00000552338 GNAT3A8MTJ3 354 aa12.6□□□□□ -0.39
LIMA1-211ENST00000552338 TRMT2AQ8IZ69 625 aaKnown RBP12.6□□□□□ -0.39
LIMA1-211ENST00000552338 QTRT2Q9H974 415 aaKnown RBP12.6□□□□□ -0.39
LIMA1-211ENST00000552338 BCL9O00512 1426 aa12.6□□□□□ -0.39
LIMA1-211ENST00000552338 TNS2Q63HR2 1409 aa12.6□□□□□ -0.39
LIMA1-211ENST00000552338 MAP3K5Q99683 1374 aa12.59□□□□□ -0.39
LIMA1-211ENST00000552338 PHKG2P15735 406 aa12.59□□□□□ -0.39
LIMA1-211ENST00000552338 ILDR1Q86SU0 546 aaPredicted RBP12.59□□□□□ -0.39
LIMA1-211ENST00000552338 IFNL2Q8IZJ0 200 aa12.59□□□□□ -0.39
LIMA1-211ENST00000552338 RNF216Q9NWF9 866 aaPredicted RBP12.59□□□□□ -0.39
LIMA1-211ENST00000552338 BABAM1Q9NWV8 329 aa12.59□□□□□ -0.39
LIMA1-211ENST00000552338 PCDH11XQ9BZA7 1347 aa12.59□□□□□ -0.39
LIMA1-211ENST00000552338 PCDH11YQ9BZA8 1340 aa12.59□□□□□ -0.39
LIMA1-211ENST00000552338 EXOC5O00471 708 aa12.58□□□□□ -0.4
LIMA1-211ENST00000552338 CYP27B1O15528 508 aa12.58□□□□□ -0.4
LIMA1-211ENST00000552338 HSP90AB1P08238 724 aaKnown RBP12.58□□□□□ -0.4
LIMA1-211ENST00000552338 RGS17Q9UGC6 210 aaPredicted RBP12.58□□□□□ -0.4
LIMA1-211ENST00000552338 MRC1P22897 1456 aa12.58□□□□□ -0.4
LIMA1-211ENST00000552338 ZNF853P0CG23 659 aa12.57□□□□□ -0.4
LIMA1-211ENST00000552338 RBM6P78332 1123 aaKnown RBP12.57□□□□□ -0.4
LIMA1-211ENST00000552338 CALD1Q05682 793 aaKnown RBP12.57□□□□□ -0.4
LIMA1-211ENST00000552338 IL17REQ8NFR9 667 aa12.57□□□□□ -0.4
LIMA1-211ENST00000552338 GOLGA2Q08379 1002 aa12.56□□□□□ -0.4
LIMA1-211ENST00000552338 C1orf141Q5JVX7 400 aa12.56□□□□□ -0.4
LIMA1-211ENST00000552338 ZNF530Q6P9A1 599 aaPredicted RBP12.56□□□□□ -0.4
LIMA1-211ENST00000552338 DCAF5Q96JK2 942 aa12.56□□□□□ -0.4
LIMA1-211ENST00000552338 ITGB4P16144 1822 aa12.55□□□□□ -0.4
LIMA1-211ENST00000552338 KDM6AO15550 1401 aaPredicted RBP12.55□□□□□ -0.4
LIMA1-211ENST00000552338 RNMTO43148 476 aaKnown RBP12.55□□□□□ -0.4
LIMA1-211ENST00000552338 SLFN5Q08AF3 891 aa12.55□□□□□ -0.4
LIMA1-211ENST00000552338 DDB1Q16531 1140 aa12.55□□□□□ -0.4
LIMA1-211ENST00000552338 USP35Q9P2H5 1018 aa12.55□□□□□ -0.4
LIMA1-211ENST00000552338 RRP7AQ9Y3A4 280 aaKnown RBP12.55□□□□□ -0.4
LIMA1-211ENST00000552338 BRWD3Q6RI45 1802 aa12.55□□□□□ -0.4
LIMA1-211ENST00000552338 TOGARAM1Q9Y4F4 1720 aa12.54□□□□□ -0.4
LIMA1-211ENST00000552338 SBF2Q86WG5 1849 aa12.54□□□□□ -0.4
LIMA1-211ENST00000552338 ERVV-2B6SEH9 535 aa12.54□□□□□ -0.4
LIMA1-211ENST00000552338 FAM98CQ17RN3 349 aaKnown RBP12.54□□□□□ -0.4
LIMA1-211ENST00000552338 RTF1Q92541 710 aaKnown RBP12.54□□□□□ -0.4
LIMA1-211ENST00000552338 CFAP44Q96MT7 982 aa12.54□□□□□ -0.4
LIMA1-211ENST00000552338 KDM3BQ7LBC6 1761 aa12.53□□□□□ -0.4
LIMA1-211ENST00000552338 E9PSI1 815 aa12.53□□□□□ -0.4
LIMA1-211ENST00000552338 CHL1O00533 1208 aa12.53□□□□□ -0.4
LIMA1-211ENST00000552338 NEUROD2Q15784 382 aa12.53□□□□□ -0.4
LIMA1-211ENST00000552338 IFT57Q9NWB7 429 aa12.53□□□□□ -0.4
LIMA1-211ENST00000552338 CCDC9Q9Y3X0 531 aaKnown RBP12.53□□□□□ -0.4
LIMA1-211ENST00000552338 GNAI1P63096 354 aa12.52□□□□□ -0.41
LIMA1-211ENST00000552338 DUSP27Q5VZP5 1158 aa12.52□□□□□ -0.41
LIMA1-211ENST00000552338 MARCH10Q8NA82 808 aaPredicted RBP12.52□□□□□ -0.41
LIMA1-211ENST00000552338 LGR6Q9HBX8 967 aa12.52□□□□□ -0.41
LIMA1-211ENST00000552338 TAF7Q15545 349 aaPredicted RBP12.51□□□□□ -0.41
LIMA1-211ENST00000552338 MCM10Q7L590 875 aa12.51□□□□□ -0.41
LIMA1-211ENST00000552338 SEPT12Q8IYM1 358 aa12.51□□□□□ -0.41
LIMA1-211ENST00000552338 SLC52A2Q9HAB3 445 aa12.51□□□□□ -0.41
LIMA1-211ENST00000552338 SPINK5Q9NQ38 1064 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms