RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	GTPBP3	Q969Y2	492 aa	Known RBP	5.27	□□□□□ -1.57
PTCH1-223	ENST00000551623	TRERF1	Q96PN7	1200 aa		5.27	□□□□□ -1.57
PTCH1-223	ENST00000551623	TMPRSS4	Q9NRS4	437 aa		5.27	□□□□□ -1.57
PTCH1-223	ENST00000551623	CUX2	O14529	1486 aa		5.26	□□□□□ -1.57
PTCH1-223	ENST00000551623	SHISA8	B8ZZ34	492 aa		5.26	□□□□□ -1.57
PTCH1-223	ENST00000551623		H7C1W4	665 aa		5.26	□□□□□ -1.57
PTCH1-223	ENST00000551623	GRIN2C	Q14957	1233 aa		5.26	□□□□□ -1.57
PTCH1-223	ENST00000551623	ZMYM1	Q5SVZ6	1142 aa		5.26	□□□□□ -1.57
PTCH1-223	ENST00000551623	PDXDC2P	Q6P474	469 aa		5.26	□□□□□ -1.57
PTCH1-223	ENST00000551623	KDF1	Q8NAX2	398 aa	Predicted RBP	5.26	□□□□□ -1.57
PTCH1-223	ENST00000551623	ZNF784	Q8NCA9	323 aa	Predicted RBP	5.26	□□□□□ -1.57
PTCH1-223	ENST00000551623	HELB	Q8NG08	1087 aa	Predicted RBP	5.26	□□□□□ -1.57
PTCH1-223	ENST00000551623	OXCT2	Q9BYC2	517 aa	Predicted RBP	5.26	□□□□□ -1.57
PTCH1-223	ENST00000551623	EIF4G1	Q04637	1599 aa	Known RBP	5.25	□□□□□ -1.57
PTCH1-223	ENST00000551623	NUTM2B	A6NNL0	878 aa	Predicted RBP	5.25	□□□□□ -1.57
PTCH1-223	ENST00000551623	NUTM2E	B1AL46	878 aa	Predicted RBP	5.25	□□□□□ -1.57
PTCH1-223	ENST00000551623	C1QTNF9B	B2RNN3	333 aa		5.25	□□□□□ -1.57
PTCH1-223	ENST00000551623	RNF144A	P50876	292 aa	Predicted RBP	5.25	□□□□□ -1.57
PTCH1-223	ENST00000551623	QPCT	Q16769	361 aa		5.25	□□□□□ -1.57
PTCH1-223	ENST00000551623	NUTM2D	Q5VT03	806 aa	Predicted RBP	5.25	□□□□□ -1.57
PTCH1-223	ENST00000551623	ZBTB33	Q86T24	672 aa		5.25	□□□□□ -1.57
PTCH1-223	ENST00000551623	NUTM2A	Q8IVF1	878 aa	Predicted RBP	5.25	□□□□□ -1.57
PTCH1-223	ENST00000551623	BTBD11	A6QL63	1104 aa		5.24	□□□□□ -1.57
PTCH1-223	ENST00000551623	LILRA1	O75019	489 aa		5.24	□□□□□ -1.57
PTCH1-223	ENST00000551623	ADD1	P35611	737 aa	Known RBP	5.24	□□□□□ -1.57
PTCH1-223	ENST00000551623	MAP2K3	P46734	347 aa		5.24	□□□□□ -1.57
PTCH1-223	ENST00000551623	KRTAP9-9	Q9BYP9	154 aa		5.24	□□□□□ -1.57
PTCH1-223	ENST00000551623	KRTAP9-4	Q9BYQ2	154 aa		5.24	□□□□□ -1.57
PTCH1-223	ENST00000551623	SEMA6B	Q9H3T3	888 aa		5.24	□□□□□ -1.57
PTCH1-223	ENST00000551623	RRAGC	Q9HB90	399 aa		5.24	□□□□□ -1.57
PTCH1-223	ENST00000551623	DYRK1B	Q9Y463	629 aa		5.24	□□□□□ -1.57
PTCH1-223	ENST00000551623	LILRB3	O75022	631 aa		5.23	□□□□□ -1.57
PTCH1-223	ENST00000551623	C1orf229	Q6ZS94	237 aa	Predicted RBP	5.23	□□□□□ -1.57
PTCH1-223	ENST00000551623	CD163	Q86VB7	1156 aa		5.23	□□□□□ -1.57
PTCH1-223	ENST00000551623	GAS2L1	Q99501	681 aa	Predicted RBP	5.23	□□□□□ -1.57
PTCH1-223	ENST00000551623	SUV39H2	Q9H5I1	410 aa		5.23	□□□□□ -1.57
PTCH1-223	ENST00000551623	LIMD1	Q9UGP4	676 aa		5.23	□□□□□ -1.57
PTCH1-223	ENST00000551623	RAB15	P59190	212 aa		5.22	□□□□□ -1.57
PTCH1-223	ENST00000551623	TUSC1	Q2TAM9	212 aa		5.22	□□□□□ -1.57
PTCH1-223	ENST00000551623	NBPF20	Q3BBV1	942 aa		5.22	□□□□□ -1.57
PTCH1-223	ENST00000551623	KDM2A	Q9Y2K7	1162 aa		5.22	□□□□□ -1.57
PTCH1-223	ENST00000551623	ERVH48-1	M5A8F1	160 aa		5.21	□□□□□ -1.58
PTCH1-223	ENST00000551623	GPC1	P35052	558 aa		5.21	□□□□□ -1.58
PTCH1-223	ENST00000551623	CHRNA4	P43681	627 aa		5.21	□□□□□ -1.58
PTCH1-223	ENST00000551623	LINC00114	Q6XXX2	140 aa		5.21	□□□□□ -1.58
PTCH1-223	ENST00000551623	EDARADD	Q8WWZ3	215 aa		5.21	□□□□□ -1.58
PTCH1-223	ENST00000551623	FKBPL	Q9UIM3	349 aa		5.21	□□□□□ -1.58
PTCH1-223	ENST00000551623	SCO2	A0A1W2PP80	73 aa		5.2	□□□□□ -1.58
PTCH1-223	ENST00000551623	PIK3R2	O00459	728 aa		5.2	□□□□□ -1.58
PTCH1-223	ENST00000551623	HOXB4	P17483	251 aa	Predicted RBP	5.2	□□□□□ -1.58
PTCH1-223	ENST00000551623	DOC2B	Q14184	412 aa		5.2	□□□□□ -1.58
PTCH1-223	ENST00000551623	RTL5	Q5HYW3	569 aa	Predicted RBP	5.2	□□□□□ -1.58
PTCH1-223	ENST00000551623	KLRG1	Q96E93	195 aa		5.2	□□□□□ -1.58
PTCH1-223	ENST00000551623	OCSTAMP	Q9BR26	566 aa		5.2	□□□□□ -1.58
PTCH1-223	ENST00000551623	NUCKS1	Q9H1E3	243 aa	Known RBP	5.2	□□□□□ -1.58
PTCH1-223	ENST00000551623	GDF2	Q9UK05	429 aa	Predicted RBP	5.2	□□□□□ -1.58
PTCH1-223	ENST00000551623	ZC3H4	Q9UPT8	1303 aa	Known RBP	5.2	□□□□□ -1.58
PTCH1-223	ENST00000551623	KRTAP4-8	A0A0G2JLE6	195 aa		5.19	□□□□□ -1.58
PTCH1-223	ENST00000551623	PTK2	Q05397	1052 aa		5.19	□□□□□ -1.58
PTCH1-223	ENST00000551623	MYSM1	Q5VVJ2	828 aa		5.19	□□□□□ -1.58
PTCH1-223	ENST00000551623	PARP9	Q8IXQ6	854 aa		5.19	□□□□□ -1.58
PTCH1-223	ENST00000551623	ADAM32	Q8TC27	787 aa		5.19	□□□□□ -1.58
PTCH1-223	ENST00000551623	CFHR5	Q9BXR6	569 aa		5.19	□□□□□ -1.58
PTCH1-223	ENST00000551623	GNB5	O14775	395 aa		5.18	□□□□□ -1.58
PTCH1-223	ENST00000551623	POU4F2	Q12837	409 aa		5.18	□□□□□ -1.58
PTCH1-223	ENST00000551623	GOLGA6L1	Q8N7Z2	621 aa		5.18	□□□□□ -1.58
PTCH1-223	ENST00000551623	CYLD	Q9NQC7	956 aa		5.18	□□□□□ -1.58
PTCH1-223	ENST00000551623	ATP5J2-PTCD1	G3V325	749 aa		5.17	□□□□□ -1.58
PTCH1-223	ENST00000551623	MEN1	O00255	615 aa		5.17	□□□□□ -1.58
PTCH1-223	ENST00000551623	AMPD1	P23109	780 aa		5.17	□□□□□ -1.58
PTCH1-223	ENST00000551623	CTDSPL2	Q05D32	466 aa		5.17	□□□□□ -1.58
PTCH1-223	ENST00000551623	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	5.17	□□□□□ -1.58
PTCH1-223	ENST00000551623	FOXD4L3	Q6VB84	417 aa	Predicted RBP	5.17	□□□□□ -1.58
PTCH1-223	ENST00000551623	BARGIN	Q6ZT62	677 aa		5.17	□□□□□ -1.58
PTCH1-223	ENST00000551623	KRTAP19-1	Q8IUB9	90 aa		5.17	□□□□□ -1.58
PTCH1-223	ENST00000551623	NOP53	Q9NZM5	478 aa	Known RBP	5.17	□□□□□ -1.58
PTCH1-223	ENST00000551623	GPSM3	Q9Y4H4	160 aa		5.17	□□□□□ -1.58
PTCH1-223	ENST00000551623	DCAF1	Q9Y4B6	1507 aa		5.17	□□□□□ -1.58
PTCH1-223	ENST00000551623	ESPN	B1AK53	854 aa		5.16	□□□□□ -1.58
PTCH1-223	ENST00000551623	F11	P03951	625 aa		5.16	□□□□□ -1.58
PTCH1-223	ENST00000551623	THBS1	P07996	1170 aa		5.16	□□□□□ -1.58
PTCH1-223	ENST00000551623	SLC27A3	Q5K4L6	730 aa		5.16	□□□□□ -1.58
PTCH1-223	ENST00000551623	NBPF10	Q6P3W6	841 aa	Known RBP	5.16	□□□□□ -1.58
PTCH1-223	ENST00000551623	NBPF15	Q8N660	670 aa		5.16	□□□□□ -1.58
PTCH1-223	ENST00000551623	PLCB2	Q00722	1185 aa		5.15	□□□□□ -1.59
PTCH1-223	ENST00000551623	NR6A1	Q15406	480 aa		5.15	□□□□□ -1.59
PTCH1-223	ENST00000551623	WDR44	Q5JSH3	913 aa		5.15	□□□□□ -1.59
PTCH1-223	ENST00000551623	SLCO4C1	Q6ZQN7	724 aa		5.15	□□□□□ -1.59
PTCH1-223	ENST00000551623	DZIP3	Q86Y13	1208 aa	Known RBP	5.15	□□□□□ -1.59
PTCH1-223	ENST00000551623	TRIM52	Q96A61	297 aa		5.15	□□□□□ -1.59
PTCH1-223	ENST00000551623	ZFP64	Q9NPA5	681 aa		5.15	□□□□□ -1.59
PTCH1-223	ENST00000551623	TIMMDC1	Q9NPL8	285 aa		5.15	□□□□□ -1.59
PTCH1-223	ENST00000551623	PHF24	Q9UPV7	400 aa		5.15	□□□□□ -1.59
PTCH1-223	ENST00000551623		A0A1W2PRU2	124 aa		5.14	□□□□□ -1.59
PTCH1-223	ENST00000551623	SPATA31C2	B4DYI2	1134 aa		5.14	□□□□□ -1.59
PTCH1-223	ENST00000551623	GATA4	P43694	442 aa		5.14	□□□□□ -1.59
PTCH1-223	ENST00000551623	DGKG	P49619	791 aa		5.14	□□□□□ -1.59
PTCH1-223	ENST00000551623	ARTN	Q5T4W7	220 aa		5.14	□□□□□ -1.59
PTCH1-223	ENST00000551623	PPP2R2D	Q66LE6	453 aa		5.14	□□□□□ -1.59
PTCH1-223	ENST00000551623	LRRN4	Q8WUT4	740 aa		5.14	□□□□□ -1.59

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