RNA–Protein interactions for RNA: ENST00000549249.5

DEPDC4-207, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-207ENST00000549249 SPATA31A3Q5VYP0 1347 aa10.83□□□□□ -0.68
DEPDC4-207ENST00000549249 HNRNPUQ00839 825 aaKnown RBP eCLIP10.82□□□□□ -0.68
DEPDC4-207ENST00000549249 WDR43Q15061 677 aaKnown RBP eCLIP10.82□□□□□ -0.68
DEPDC4-207ENST00000549249 CFAP53Q96M91 514 aa10.82□□□□□ -0.68
DEPDC4-207ENST00000549249 PHLPP1O60346 1717 aa10.81□□□□□ -0.68
DEPDC4-207ENST00000549249 COL18A1P39060 1754 aa10.81□□□□□ -0.68
DEPDC4-207ENST00000549249 PPM1GO15355 546 aaPredicted RBP10.81□□□□□ -0.68
DEPDC4-207ENST00000549249 COL16A1Q07092 1604 aaPredicted RBP10.8□□□□□ -0.68
DEPDC4-207ENST00000549249 RGPD2P0DJD1 1756 aa10.8□□□□□ -0.68
DEPDC4-207ENST00000549249 LMOD2Q6P5Q4 547 aa10.8□□□□□ -0.68
DEPDC4-207ENST00000549249 RTL1A6NKG5 1358 aa10.79□□□□□ -0.68
DEPDC4-207ENST00000549249 ARHGEF10O15013 1369 aa10.79□□□□□ -0.68
DEPDC4-207ENST00000549249 FLT4P35916 1363 aa10.79□□□□□ -0.68
DEPDC4-207ENST00000549249 SENP3-EIF4A1A0A087X0R7 540 aa10.79□□□□□ -0.68
DEPDC4-207ENST00000549249 DIAPH1O60610 1272 aaKnown RBP10.79□□□□□ -0.68
DEPDC4-207ENST00000549249 IL13P35225 146 aa10.79□□□□□ -0.68
DEPDC4-207ENST00000549249 TMEM106CQ9BVX2 250 aa10.79□□□□□ -0.68
DEPDC4-207ENST00000549249 RGS17Q9UGC6 210 aaPredicted RBP10.79□□□□□ -0.68
DEPDC4-207ENST00000549249 KIF24Q5T7B8 1368 aa10.78□□□□□ -0.68
DEPDC4-207ENST00000549249 COL22A1Q8NFW1 1626 aaPredicted RBP10.78□□□□□ -0.68
DEPDC4-207ENST00000549249 GCP02774 474 aa10.78□□□□□ -0.68
DEPDC4-207ENST00000549249 EIF4A2Q14240 407 aaKnown RBP10.78□□□□□ -0.68
DEPDC4-207ENST00000549249 HSP90AB2PQ58FF8 381 aa10.78□□□□□ -0.68
DEPDC4-207ENST00000549249 KCNH5Q8NCM2 988 aa10.78□□□□□ -0.68
DEPDC4-207ENST00000549249 PCDHB8Q9UN66 801 aa10.78□□□□□ -0.68
DEPDC4-207ENST00000549249 ZBED9Q6R2W3 1325 aa10.78□□□□□ -0.68
DEPDC4-207ENST00000549249 JCADQ9P266 1359 aa10.77□□□□□ -0.68
DEPDC4-207ENST00000549249 CHRM1P11229 460 aaPredicted RBP10.77□□□□□ -0.69
DEPDC4-207ENST00000549249 HOXC9P31274 260 aa10.77□□□□□ -0.69
DEPDC4-207ENST00000549249 ARHGEF25Q86VW2 580 aa10.77□□□□□ -0.69
DEPDC4-207ENST00000549249 CCDC146Q8IYE0 955 aa10.77□□□□□ -0.69
DEPDC4-207ENST00000549249 CAMTA1Q9Y6Y1 1673 aa10.76□□□□□ -0.69
DEPDC4-207ENST00000549249 U2SURPO15042 1029 aaKnown RBP10.76□□□□□ -0.69
DEPDC4-207ENST00000549249 U2AF1L5P0DN76 240 aaPredicted RBP10.76□□□□□ -0.69
DEPDC4-207ENST00000549249 AMPHP49418 695 aa10.76□□□□□ -0.69
DEPDC4-207ENST00000549249 U2AF1Q01081 240 aaKnown RBP eCLIP10.76□□□□□ -0.69
DEPDC4-207ENST00000549249 MEX3CQ5U5Q3 659 aaKnown RBP10.76□□□□□ -0.69
DEPDC4-207ENST00000549249 POTEAQ6S8J7 498 aa10.76□□□□□ -0.69
DEPDC4-207ENST00000549249 CABLES1Q8TDN4 633 aa10.76□□□□□ -0.69
DEPDC4-207ENST00000549249 NUDCQ9Y266 331 aa10.76□□□□□ -0.69
DEPDC4-207ENST00000549249 DLG5Q8TDM6 1919 aa10.76□□□□□ -0.69
DEPDC4-207ENST00000549249 LMO7Q8WWI1 1683 aa10.76□□□□□ -0.69
DEPDC4-207ENST00000549249 ABCC6O95255 1503 aa10.75□□□□□ -0.69
DEPDC4-207ENST00000549249 PLEKHF1Q96S99 279 aa10.75□□□□□ -0.69
DEPDC4-207ENST00000549249 SPATA31A6Q5VVP1 1343 aa10.75□□□□□ -0.69
DEPDC4-207ENST00000549249 CENPBP07199 599 aaPredicted RBP10.74□□□□□ -0.69
DEPDC4-207ENST00000549249 PLCG2P16885 1265 aa10.74□□□□□ -0.69
DEPDC4-207ENST00000549249 ZNF467Q7Z7K2 595 aaPredicted RBP10.74□□□□□ -0.69
DEPDC4-207ENST00000549249 IP6K1Q92551 441 aa10.74□□□□□ -0.69
DEPDC4-207ENST00000549249 RSPH6AQ9H0K4 717 aa10.74□□□□□ -0.69
DEPDC4-207ENST00000549249 CPDO75976 1380 aa10.74□□□□□ -0.69
DEPDC4-207ENST00000549249 ZBTB7CA1YPR0 619 aa10.73□□□□□ -0.69
DEPDC4-207ENST00000549249 APAF1O14727 1248 aa10.73□□□□□ -0.69
DEPDC4-207ENST00000549249 ZC3H6P61129 1189 aaKnown RBP10.73□□□□□ -0.69
DEPDC4-207ENST00000549249 ZNF772Q68DY9 489 aaPredicted RBP10.73□□□□□ -0.69
DEPDC4-207ENST00000549249 RUNDC1Q96C34 613 aa10.73□□□□□ -0.69
DEPDC4-207ENST00000549249 IGSF1Q8N6C5 1336 aa10.73□□□□□ -0.69
DEPDC4-207ENST00000549249 FAM208AQ9UK61 1670 aaKnown RBP10.73□□□□□ -0.69
DEPDC4-207ENST00000549249 HMOX1P09601 288 aa10.72□□□□□ -0.69
DEPDC4-207ENST00000549249 AEBP1Q8IUX7 1158 aa10.72□□□□□ -0.69
DEPDC4-207ENST00000549249 AXIN2Q9Y2T1 843 aa10.72□□□□□ -0.69
DEPDC4-207ENST00000549249 SALL2Q9Y467 1007 aaPredicted RBP10.72□□□□□ -0.69
DEPDC4-207ENST00000549249 KIAA0232Q92628 1395 aa10.72□□□□□ -0.69
DEPDC4-207ENST00000549249 NCAPD2Q15021 1401 aa10.72□□□□□ -0.69
DEPDC4-207ENST00000549249 FCHSD2O94868 740 aa10.71□□□□□ -0.69
DEPDC4-207ENST00000549249 PRKAR2BP31323 418 aa10.71□□□□□ -0.69
DEPDC4-207ENST00000549249 KDRP35968 1356 aa10.71□□□□□ -0.69
DEPDC4-207ENST00000549249 SLAIN1Q8ND83 568 aa10.71□□□□□ -0.69
DEPDC4-207ENST00000549249 LRRC59Q96AG4 307 aaKnown RBP10.71□□□□□ -0.69
DEPDC4-207ENST00000549249 ZNF521Q96K83 1311 aa10.71□□□□□ -0.69
DEPDC4-207ENST00000549249 EYA1Q99502 592 aa10.71□□□□□ -0.69
DEPDC4-207ENST00000549249 CHRNA2Q15822 529 aa10.7□□□□□ -0.7
DEPDC4-207ENST00000549249 SULT6B1Q6IMI4 303 aa10.7□□□□□ -0.7
DEPDC4-207ENST00000549249 TCP11L2Q8N4U5 519 aa10.7□□□□□ -0.7
DEPDC4-207ENST00000549249 LTV1Q96GA3 475 aaPredicted RBP10.7□□□□□ -0.7
DEPDC4-207ENST00000549249 ERBB3P21860 1342 aa10.69□□□□□ -0.7
DEPDC4-207ENST00000549249 IRX5P78411 483 aaPredicted RBP10.69□□□□□ -0.7
DEPDC4-207ENST00000549249 ANKRD24Q8TF21 1146 aa10.69□□□□□ -0.7
DEPDC4-207ENST00000549249 PHACTR3Q96KR7 559 aa10.69□□□□□ -0.7
DEPDC4-207ENST00000549249 RRP7AQ9Y3A4 280 aaKnown RBP10.69□□□□□ -0.7
DEPDC4-207ENST00000549249 COL14A1Q05707 1796 aaKnown RBP10.69□□□□□ -0.7
DEPDC4-207ENST00000549249 PLCH1Q4KWH8 1693 aa10.69□□□□□ -0.7
DEPDC4-207ENST00000549249 NUTM2BA6NNL0 878 aaPredicted RBP10.68□□□□□ -0.7
DEPDC4-207ENST00000549249 NUTM2EB1AL46 878 aaPredicted RBP10.68□□□□□ -0.7
DEPDC4-207ENST00000549249 TMPOP42166 694 aaKnown RBP10.68□□□□□ -0.7
DEPDC4-207ENST00000549249 NUTM2AQ8IVF1 878 aaPredicted RBP10.68□□□□□ -0.7
DEPDC4-207ENST00000549249 COL5A2P05997 1499 aaPredicted RBP10.68□□□□□ -0.7
DEPDC4-207ENST00000549249 VIRMAQ69YN4 1812 aaKnown RBP10.68□□□□□ -0.7
DEPDC4-207ENST00000549249 MAPK8IP3Q9UPT6 1336 aa10.67□□□□□ -0.7
DEPDC4-207ENST00000549249 RXRBP28702 533 aa10.67□□□□□ -0.7
DEPDC4-207ENST00000549249 NBPF6Q5VWK0 638 aa10.67□□□□□ -0.7
DEPDC4-207ENST00000549249 USHBP1Q8N6Y0 703 aa10.67□□□□□ -0.7
DEPDC4-207ENST00000549249 CDCA7LQ96GN5 454 aa10.67□□□□□ -0.7
DEPDC4-207ENST00000549249 NBPF4Q96M43 638 aa10.67□□□□□ -0.7
DEPDC4-207ENST00000549249 PRDM11Q9NQV5 511 aa10.67□□□□□ -0.7
DEPDC4-207ENST00000549249 NRAPQ86VF7 1730 aa10.67□□□□□ -0.7
DEPDC4-207ENST00000549249 ECM2O94769 699 aaPredicted RBP10.66□□□□□ -0.7
DEPDC4-207ENST00000549249 NEUROD2Q15784 382 aa10.66□□□□□ -0.7
DEPDC4-207ENST00000549249 WWC1Q8IX03 1113 aa10.66□□□□□ -0.7
DEPDC4-207ENST00000549249 NGEFQ8N5V2 710 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms