RNA–Protein interactions for RNA: ENST00000548877.1

CDX2-202, Transcript of caudal type homeobox 2, humanhuman

TSL 3

Gene CDX2, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-202ENST00000548877 TERF2IPQ9NYB0 399 aa19.27■□□□□ 0.68
CDX2-202ENST00000548877 A0A1W2PP64 1363 aa19.27■□□□□ 0.68
CDX2-202ENST00000548877 YBX3P16989 372 aaKnown RBP eCLIP19.25■□□□□ 0.67
CDX2-202ENST00000548877 KLHL34Q8N239 644 aa19.25■□□□□ 0.67
CDX2-202ENST00000548877 TMC1Q8TDI8 760 aa19.25■□□□□ 0.67
CDX2-202ENST00000548877 KCNQ4P56696 695 aa19.24■□□□□ 0.67
CDX2-202ENST00000548877 PELP1Q8IZL8 1130 aaKnown RBP19.23■□□□□ 0.67
CDX2-202ENST00000548877 ZCRB1Q8TBF4 217 aaKnown RBP19.23■□□□□ 0.67
CDX2-202ENST00000548877 RGPD2P0DJD1 1756 aa19.23■□□□□ 0.67
CDX2-202ENST00000548877 HOXC9P31274 260 aa19.22■□□□□ 0.67
CDX2-202ENST00000548877 COL23A1Q86Y22 540 aaPredicted RBP19.22■□□□□ 0.67
CDX2-202ENST00000548877 SYTL4Q96C24 671 aaPredicted RBP19.22■□□□□ 0.67
CDX2-202ENST00000548877 CCNL1Q9UK58 526 aaPredicted RBP19.22■□□□□ 0.67
CDX2-202ENST00000548877 MAP3K19Q56UN5 1328 aa19.22■□□□□ 0.67
CDX2-202ENST00000548877 MEGF6O75095 1541 aa19.21■□□□□ 0.67
CDX2-202ENST00000548877 HMGB2P26583 209 aaKnown RBP19.21■□□□□ 0.67
CDX2-202ENST00000548877 LTV1Q96GA3 475 aaPredicted RBP19.21■□□□□ 0.67
CDX2-202ENST00000548877 CARD11Q9BXL7 1154 aa19.21■□□□□ 0.67
CDX2-202ENST00000548877 CGNL1Q0VF96 1302 aa19.21■□□□□ 0.67
CDX2-202ENST00000548877 CD2APQ9Y5K6 639 aa19.2■□□□□ 0.66
CDX2-202ENST00000548877 NEUROD1Q13562 356 aa19.19■□□□□ 0.66
CDX2-202ENST00000548877 USP47Q96K76 1375 aa19.19■□□□□ 0.66
CDX2-202ENST00000548877 TAF1LQ8IZX4 1826 aa19.18■□□□□ 0.66
CDX2-202ENST00000548877 C5P01031 1676 aa19.18■□□□□ 0.66
CDX2-202ENST00000548877 COG3Q96JB2 828 aa19.18■□□□□ 0.66
CDX2-202ENST00000548877 RTL1A6NKG5 1358 aa19.18■□□□□ 0.66
CDX2-202ENST00000548877 ATP10DQ9P241 1426 aa19.17■□□□□ 0.66
CDX2-202ENST00000548877 FLAD1Q8NFF5 587 aa19.17■□□□□ 0.66
CDX2-202ENST00000548877 ADCY9O60503 1353 aa19.17■□□□□ 0.66
CDX2-202ENST00000548877 AMPHP49418 695 aa19.16■□□□□ 0.66
CDX2-202ENST00000548877 NBPF6Q5VWK0 638 aa19.14■□□□□ 0.65
CDX2-202ENST00000548877 NBPF4Q96M43 638 aa19.14■□□□□ 0.65
CDX2-202ENST00000548877 TESK2Q96S53 571 aa19.14■□□□□ 0.65
CDX2-202ENST00000548877 MSH5O43196 834 aa19.13■□□□□ 0.65
CDX2-202ENST00000548877 SLC24A1O60721 1099 aa19.13■□□□□ 0.65
CDX2-202ENST00000548877 FBLN1P23142 703 aa19.12■□□□□ 0.65
CDX2-202ENST00000548877 MSL1Q68DK7 614 aa19.11■□□□□ 0.65
CDX2-202ENST00000548877 GPBP1L1Q9HC44 474 aaPredicted RBP19.11■□□□□ 0.65
CDX2-202ENST00000548877 HSPA6P17066 643 aa19.1■□□□□ 0.65
CDX2-202ENST00000548877 RAPGEF4Q8WZA2 1011 aa19.1■□□□□ 0.65
CDX2-202ENST00000548877 UBR3Q6ZT12 1888 aa19.09■□□□□ 0.65
CDX2-202ENST00000548877 PALLDQ8WX93 1383 aa19.09■□□□□ 0.65
CDX2-202ENST00000548877 C4BP0C0L5 1744 aa19.09■□□□□ 0.65
CDX2-202ENST00000548877 TOGARAM1Q9Y4F4 1720 aa19.09■□□□□ 0.65
CDX2-202ENST00000548877 PCDH11XQ9BZA7 1347 aa19.09■□□□□ 0.65
CDX2-202ENST00000548877 PCDH11YQ9BZA8 1340 aa19.09■□□□□ 0.65
CDX2-202ENST00000548877 ITGB4P16144 1822 aa19.09■□□□□ 0.65
CDX2-202ENST00000548877 INSRP06213 1382 aa19.08■□□□□ 0.65
CDX2-202ENST00000548877 KIF24Q5T7B8 1368 aa19.08■□□□□ 0.65
CDX2-202ENST00000548877 TATP17735 454 aaPredicted RBP19.08■□□□□ 0.64
CDX2-202ENST00000548877 SMG6Q86US8 1419 aaKnown RBP19.08■□□□□ 0.64
CDX2-202ENST00000548877 FYB1O15117 783 aa19.07■□□□□ 0.64
CDX2-202ENST00000548877 RRS1Q15050 365 aaKnown RBP19.07■□□□□ 0.64
CDX2-202ENST00000548877 SMARCC1Q92922 1105 aaPredicted RBP19.07■□□□□ 0.64
CDX2-202ENST00000548877 MAP2P11137 1827 aaKnown RBP19.07■□□□□ 0.64
CDX2-202ENST00000548877 USHBP1Q8N6Y0 703 aa19.06■□□□□ 0.64
CDX2-202ENST00000548877 NSD3Q9BZ95 1437 aa19.06■□□□□ 0.64
CDX2-202ENST00000548877 ST20-MTHFSA0A0A6YYL1 179 aa19.05■□□□□ 0.64
CDX2-202ENST00000548877 CYP27B1O15528 508 aa19.05■□□□□ 0.64
CDX2-202ENST00000548877 PKD1L3Q7Z443 1732 aa19.05■□□□□ 0.64
CDX2-202ENST00000548877 CICQ96RK0 1608 aaPredicted RBP19.04■□□□□ 0.64
CDX2-202ENST00000548877 NCAPD2Q15021 1401 aa19.04■□□□□ 0.64
CDX2-202ENST00000548877 NKX1-1Q15270 411 aaPredicted RBP19.04■□□□□ 0.64
CDX2-202ENST00000548877 AMIGO3Q86WK7 504 aa19.04■□□□□ 0.64
CDX2-202ENST00000548877 IGSF1Q8N6C5 1336 aa19.03■□□□□ 0.64
CDX2-202ENST00000548877 HSP90AB2PQ58FF8 381 aa19.03■□□□□ 0.64
CDX2-202ENST00000548877 MPRIPQ6WCQ1 1025 aa19.03■□□□□ 0.64
CDX2-202ENST00000548877 FLT4P35916 1363 aa19.03■□□□□ 0.64
CDX2-202ENST00000548877 SSFA2P28290 1259 aa19.02■□□□□ 0.64
CDX2-202ENST00000548877 AK7Q96M32 723 aa19.02■□□□□ 0.64
CDX2-202ENST00000548877 GGNBP2Q9H3C7 697 aa19.02■□□□□ 0.64
CDX2-202ENST00000548877 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.01■□□□□ 0.63
CDX2-202ENST00000548877 KIF3CO14782 793 aa19.01■□□□□ 0.63
CDX2-202ENST00000548877 KIF13BQ9NQT8 1826 aa19■□□□□ 0.63
CDX2-202ENST00000548877 PIGBQ92521 554 aa19■□□□□ 0.63
CDX2-202ENST00000548877 TONSLQ96HA7 1378 aa19■□□□□ 0.63
CDX2-202ENST00000548877 KIF20BQ96Q89 1820 aa19■□□□□ 0.63
CDX2-202ENST00000548877 ZNF526Q8TF50 670 aaPredicted RBP18.98■□□□□ 0.63
CDX2-202ENST00000548877 LOC102724428A0A0B4J2F2 783 aa18.97■□□□□ 0.63
CDX2-202ENST00000548877 SIK1P57059 783 aa18.97■□□□□ 0.63
CDX2-202ENST00000548877 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.97■□□□□ 0.63
CDX2-202ENST00000548877 KIAA1551Q9HCM1 1747 aa18.97■□□□□ 0.63
CDX2-202ENST00000548877 LINC00116Q8NCU8 138 aa18.96■□□□□ 0.63
CDX2-202ENST00000548877 ANKRD26Q9UPS8 1709 aa18.95■□□□□ 0.62
CDX2-202ENST00000548877 PHF14O94880 888 aa18.95■□□□□ 0.62
CDX2-202ENST00000548877 TMF1P82094 1093 aa18.94■□□□□ 0.62
CDX2-202ENST00000548877 SMIM5Q71RC9 77 aa18.94■□□□□ 0.62
CDX2-202ENST00000548877 SPG7Q9UQ90 795 aa18.94■□□□□ 0.62
CDX2-202ENST00000548877 ZNF831Q5JPB2 1677 aa18.93■□□□□ 0.62
CDX2-202ENST00000548877 PXDNLA1KZ92 1463 aa18.93■□□□□ 0.62
CDX2-202ENST00000548877 APLP1P51693 650 aa18.93■□□□□ 0.62
CDX2-202ENST00000548877 PLEKHG2Q9H7P9 1386 aa18.93■□□□□ 0.62
CDX2-202ENST00000548877 TGFB2P61812 414 aa18.92■□□□□ 0.62
CDX2-202ENST00000548877 ITPK1Q13572 414 aa18.92■□□□□ 0.62
CDX2-202ENST00000548877 DNAJC5GQ8N7S2 189 aa18.92■□□□□ 0.62
CDX2-202ENST00000548877 TOMM70O94826 608 aa18.91■□□□□ 0.62
CDX2-202ENST00000548877 WASHC2AQ641Q2 1341 aa18.91■□□□□ 0.62
CDX2-202ENST00000548877 GNPATO15228 680 aa18.9■□□□□ 0.62
CDX2-202ENST00000548877 MMP10P09238 476 aa18.9■□□□□ 0.62
CDX2-202ENST00000548877 TMOD3Q9NYL9 352 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms