RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 CCNL1Q9UK58 526 aaPredicted RBP23.9■■□□□ 1.42
VPS29-204ENST00000548259 LTN1O94822 1766 aa23.9■■□□□ 1.42
VPS29-204ENST00000548259 A0A1W2PP64 1363 aa23.9■■□□□ 1.42
VPS29-204ENST00000548259 SLC24A1O60721 1099 aa23.89■■□□□ 1.41
VPS29-204ENST00000548259 USP47Q96K76 1375 aa23.87■■□□□ 1.41
VPS29-204ENST00000548259 KCNQ4P56696 695 aa23.86■■□□□ 1.41
VPS29-204ENST00000548259 NLGN2Q8NFZ4 835 aa23.86■■□□□ 1.41
VPS29-204ENST00000548259 QSER1Q2KHR3 1735 aa23.85■■□□□ 1.41
VPS29-204ENST00000548259 HOXC9P31274 260 aa23.85■■□□□ 1.41
VPS29-204ENST00000548259 FAM208AQ9UK61 1670 aaKnown RBP23.85■■□□□ 1.41
VPS29-204ENST00000548259 CGNL1Q0VF96 1302 aa23.84■■□□□ 1.41
VPS29-204ENST00000548259 MAP3K19Q56UN5 1328 aa23.84■■□□□ 1.41
VPS29-204ENST00000548259 FLAD1Q8NFF5 587 aa23.83■■□□□ 1.41
VPS29-204ENST00000548259 RAPGEF4Q8WZA2 1011 aa23.82■■□□□ 1.4
VPS29-204ENST00000548259 SMG6Q86US8 1419 aaKnown RBP23.8■■□□□ 1.4
VPS29-204ENST00000548259 COL23A1Q86Y22 540 aaPredicted RBP23.8■■□□□ 1.4
VPS29-204ENST00000548259 GOLGB1Q14789 3259 aaKnown RBP23.8■■□□□ 1.4
VPS29-204ENST00000548259 RTL1A6NKG5 1358 aa23.79■■□□□ 1.4
VPS29-204ENST00000548259 NSD2O96028 1365 aa23.79■■□□□ 1.4
VPS29-204ENST00000548259 YBX3P16989 372 aaKnown RBP eCLIP23.79■■□□□ 1.41e-6■■□□□ 11.7
VPS29-204ENST00000548259 CD2APQ9Y5K6 639 aa23.79■■□□□ 1.4
VPS29-204ENST00000548259 TONSLQ96HA7 1378 aa23.78■■□□□ 1.4
VPS29-204ENST00000548259 TATP17735 454 aaPredicted RBP23.77■■□□□ 1.4
VPS29-204ENST00000548259 IFFO2Q5TF58 517 aa23.77■■□□□ 1.4
VPS29-204ENST00000548259 COL24A1Q17RW2 1714 aa23.76■■□□□ 1.39
VPS29-204ENST00000548259 MSL1Q68DK7 614 aa23.76■■□□□ 1.39
VPS29-204ENST00000548259 MEGF6O75095 1541 aa23.75■■□□□ 1.39
VPS29-204ENST00000548259 GPBP1L1Q9HC44 474 aaPredicted RBP23.75■■□□□ 1.39
VPS29-204ENST00000548259 DOT1LQ8TEK3 1739 aa23.75■■□□□ 1.39
VPS29-204ENST00000548259 NBPF6Q5VWK0 638 aa23.74■■□□□ 1.39
VPS29-204ENST00000548259 NBPF4Q96M43 638 aa23.74■■□□□ 1.39
VPS29-204ENST00000548259 PCDH11XQ9BZA7 1347 aa23.74■■□□□ 1.39
VPS29-204ENST00000548259 PCDH11YQ9BZA8 1340 aa23.74■■□□□ 1.39
VPS29-204ENST00000548259 LY75O60449 1722 aa23.73■■□□□ 1.39
VPS29-204ENST00000548259 SMARCC1Q92922 1105 aaPredicted RBP23.72■■□□□ 1.39
VPS29-204ENST00000548259 SHANK3Q9BYB0 1731 aa23.71■■□□□ 1.39
VPS29-204ENST00000548259 ATP10DQ9P241 1426 aa23.71■■□□□ 1.39
VPS29-204ENST00000548259 FBLN1P23142 703 aa23.71■■□□□ 1.39
VPS29-204ENST00000548259 RRS1Q15050 365 aaKnown RBP23.71■■□□□ 1.39
VPS29-204ENST00000548259 AK7Q96M32 723 aa23.71■■□□□ 1.39
VPS29-204ENST00000548259 PALLDQ8WX93 1383 aa23.7■■□□□ 1.38
VPS29-204ENST00000548259 ST20-MTHFSA0A0A6YYL1 179 aa23.7■■□□□ 1.38
VPS29-204ENST00000548259 USHBP1Q8N6Y0 703 aa23.7■■□□□ 1.38
VPS29-204ENST00000548259 NSD3Q9BZ95 1437 aa23.69■■□□□ 1.38
VPS29-204ENST00000548259 MPRIPQ6WCQ1 1025 aa23.69■■□□□ 1.38
VPS29-204ENST00000548259 TESK2Q96S53 571 aa23.69■■□□□ 1.38
VPS29-204ENST00000548259 CEP350Q5VT06 3117 aa23.69■■□□□ 1.38
VPS29-204ENST00000548259 TUBGCP6Q96RT7 1819 aa23.68■■□□□ 1.38
VPS29-204ENST00000548259 GGNBP2Q9H3C7 697 aa23.67■■□□□ 1.38
VPS29-204ENST00000548259 FYB1O15117 783 aa23.66■■□□□ 1.38
VPS29-204ENST00000548259 INSRP06213 1382 aa23.65■■□□□ 1.38
VPS29-204ENST00000548259 KIF24Q5T7B8 1368 aa23.65■■□□□ 1.38
VPS29-204ENST00000548259 TMF1P82094 1093 aa23.64■■□□□ 1.37
VPS29-204ENST00000548259 FLT4P35916 1363 aa23.64■■□□□ 1.37
VPS29-204ENST00000548259 HSPA6P17066 643 aa23.63■■□□□ 1.37
VPS29-204ENST00000548259 CDCA8Q53HL2 280 aa23.63■■□□□ 1.37
VPS29-204ENST00000548259 HSP90AB2PQ58FF8 381 aa23.62■■□□□ 1.37
VPS29-204ENST00000548259 ZNF526Q8TF50 670 aaPredicted RBP23.62■■□□□ 1.37
VPS29-204ENST00000548259 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.61■■□□□ 1.37
VPS29-204ENST00000548259 PHF14O94880 888 aa23.61■■□□□ 1.37
VPS29-204ENST00000548259 C5P01031 1676 aa23.6■■□□□ 1.37
VPS29-204ENST00000548259 IGSF1Q8N6C5 1336 aa23.6■■□□□ 1.37
VPS29-204ENST00000548259 SSFA2P28290 1259 aa23.6■■□□□ 1.37
VPS29-204ENST00000548259 SPG7Q9UQ90 795 aa23.6■■□□□ 1.37
VPS29-204ENST00000548259 CYP27B1O15528 508 aa23.59■■□□□ 1.37
VPS29-204ENST00000548259 ADCY9O60503 1353 aa23.59■■□□□ 1.37
VPS29-204ENST00000548259 RGPD2P0DJD1 1756 aa23.57■■□□□ 1.36
VPS29-204ENST00000548259 PIGBQ92521 554 aa23.56■■□□□ 1.36
VPS29-204ENST00000548259 LOC102724428A0A0B4J2F2 783 aa23.55■■□□□ 1.36
VPS29-204ENST00000548259 SIK1P57059 783 aa23.55■■□□□ 1.36
VPS29-204ENST00000548259 TMOD3Q9NYL9 352 aa23.55■■□□□ 1.36
VPS29-204ENST00000548259 NKX1-1Q15270 411 aaPredicted RBP23.54■■□□□ 1.36
VPS29-204ENST00000548259 C4BP0C0L5 1744 aa23.53■■□□□ 1.36
VPS29-204ENST00000548259 GNPATO15228 680 aa23.52■■□□□ 1.36
VPS29-204ENST00000548259 PPM1GO15355 546 aaPredicted RBP23.52■■□□□ 1.36
VPS29-204ENST00000548259 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.52■■□□□ 1.36
VPS29-204ENST00000548259 WWC3Q9ULE0 1092 aa23.52■■□□□ 1.36
VPS29-204ENST00000548259 ATP6V1AP38606 617 aa23.5■■□□□ 1.35
VPS29-204ENST00000548259 LINC00116Q8NCU8 138 aa23.5■■□□□ 1.35
VPS29-204ENST00000548259 AMIGO3Q86WK7 504 aa23.49■■□□□ 1.35
VPS29-204ENST00000548259 EMILIN1Q9Y6C2 1016 aa23.49■■□□□ 1.35
VPS29-204ENST00000548259 IFNL2Q8IZJ0 200 aa23.48■■□□□ 1.35
VPS29-204ENST00000548259 TAF1LQ8IZX4 1826 aa23.47■■□□□ 1.35
VPS29-204ENST00000548259 MMP10P09238 476 aa23.47■■□□□ 1.35
VPS29-204ENST00000548259 APLP1P51693 650 aa23.47■■□□□ 1.35
VPS29-204ENST00000548259 TGFB2P61812 414 aa23.47■■□□□ 1.35
VPS29-204ENST00000548259 KIF3CO14782 793 aa23.46■■□□□ 1.35
VPS29-204ENST00000548259 SMIM5Q71RC9 77 aa23.46■■□□□ 1.35
VPS29-204ENST00000548259 NLGN1Q8N2Q7 840 aa23.46■■□□□ 1.35
VPS29-204ENST00000548259 RTCBQ9Y3I0 505 aaKnown RBP23.46■■□□□ 1.35
VPS29-204ENST00000548259 WASHC2AQ641Q2 1341 aa23.45■■□□□ 1.34
VPS29-204ENST00000548259 TRAPPC3LQ5T215 181 aa23.45■■□□□ 1.34
VPS29-204ENST00000548259 ASAP1Q9ULH1 1129 aa23.45■■□□□ 1.34
VPS29-204ENST00000548259 NCAPD2Q15021 1401 aa23.43■■□□□ 1.34
VPS29-204ENST00000548259 TOMM70O94826 608 aa23.43■■□□□ 1.34
VPS29-204ENST00000548259 PHKG2P15735 406 aa23.43■■□□□ 1.34
VPS29-204ENST00000548259 ITPK1Q13572 414 aa23.43■■□□□ 1.34
VPS29-204ENST00000548259 BCS1LQ9Y276 419 aa23.43■■□□□ 1.34
VPS29-204ENST00000548259 PKD1L3Q7Z443 1732 aa23.42■■□□□ 1.34
VPS29-204ENST00000548259 ADRA2BP18089 450 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms