RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 TMC1Q8TDI8 760 aa8.35□□□□□ -1.07
SYNE1-239ENST00000545694 SIRT1Q96EB6 747 aa8.35□□□□□ -1.07
SYNE1-239ENST00000545694 USP32Q8NFA0 1604 aa8.35□□□□□ -1.07
SYNE1-239ENST00000545694 KNDC1Q76NI1 1749 aa8.34□□□□□ -1.07
SYNE1-239ENST00000545694 ZBED9Q6R2W3 1325 aa8.34□□□□□ -1.07
SYNE1-239ENST00000545694 PADI6Q6TGC4 694 aa8.34□□□□□ -1.07
SYNE1-239ENST00000545694 Q6ZNB5 142 aa8.34□□□□□ -1.07
SYNE1-239ENST00000545694 MTRQ99707 1265 aa8.34□□□□□ -1.07
SYNE1-239ENST00000545694 NPDC1Q9NQX5 325 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-239ENST00000545694 YTHDC2Q9H6S0 1430 aaKnown RBP8.34□□□□□ -1.07
SYNE1-239ENST00000545694 SETD1AO15047 1707 aaKnown RBP8.34□□□□□ -1.07
SYNE1-239ENST00000545694 C3P01024 1663 aa8.34□□□□□ -1.08
SYNE1-239ENST00000545694 MLECQ14165 292 aa8.33□□□□□ -1.08
SYNE1-239ENST00000545694 ZNF516Q92618 1163 aa8.33□□□□□ -1.08
SYNE1-239ENST00000545694 GTF3C3Q9Y5Q9 886 aa8.33□□□□□ -1.08
SYNE1-239ENST00000545694 LRPPRCP42704 1394 aaKnown RBP8.33□□□□□ -1.08
SYNE1-239ENST00000545694 ATAD2Q6PL18 1390 aa8.33□□□□□ -1.08
SYNE1-239ENST00000545694 ABCC11Q96J66 1382 aa8.33□□□□□ -1.08
SYNE1-239ENST00000545694 APLP1P51693 650 aa8.32□□□□□ -1.08
SYNE1-239ENST00000545694 HNRNPUQ00839 825 aaKnown RBP eCLIP8.32□□□□□ -1.08
SYNE1-239ENST00000545694 PNISRQ8TF01 805 aaKnown RBP8.32□□□□□ -1.08
SYNE1-239ENST00000545694 IL21Q9HBE4 155 aa8.32□□□□□ -1.08
SYNE1-239ENST00000545694 TSHZ2Q9NRE2 1034 aa8.32□□□□□ -1.08
SYNE1-239ENST00000545694 TRAK1Q9UPV9 953 aa8.32□□□□□ -1.08
SYNE1-239ENST00000545694 NSD2O96028 1365 aa8.32□□□□□ -1.08
SYNE1-239ENST00000545694 TMEM2Q9UHN6 1383 aa8.32□□□□□ -1.08
SYNE1-239ENST00000545694 PTPRMP28827 1452 aa8.32□□□□□ -1.08
SYNE1-239ENST00000545694 TECPR2O15040 1411 aa8.31□□□□□ -1.08
SYNE1-239ENST00000545694 FAM135BQ49AJ0 1406 aa8.31□□□□□ -1.08
SYNE1-239ENST00000545694 SLIT1O75093 1534 aa8.31□□□□□ -1.08
SYNE1-239ENST00000545694 SWT1Q5T5J6 900 aaKnown RBP8.31□□□□□ -1.08
SYNE1-239ENST00000545694 TTC13Q8NBP0 860 aa8.31□□□□□ -1.08
SYNE1-239ENST00000545694 DIP2AQ14689 1571 aa8.31□□□□□ -1.08
SYNE1-239ENST00000545694 NRXN3Q9Y4C0 1643 aa8.3□□□□□ -1.08
SYNE1-239ENST00000545694 MLLT3P42568 568 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-239ENST00000545694 TMEM132EQ6IEE7 984 aa8.3□□□□□ -1.08
SYNE1-239ENST00000545694 PPP1R18Q6NYC8 613 aa8.3□□□□□ -1.08
SYNE1-239ENST00000545694 NKX2-3Q8TAU0 364 aa8.3□□□□□ -1.08
SYNE1-239ENST00000545694 RBM27Q9P2N5 1060 aaKnown RBP8.3□□□□□ -1.08
SYNE1-239ENST00000545694 PLEKHG1Q9ULL1 1385 aa8.3□□□□□ -1.08
SYNE1-239ENST00000545694 FAM9BQ8IZU0 186 aa8.29□□□□□ -1.08
SYNE1-239ENST00000545694 THEMISQ8N1K5 641 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-239ENST00000545694 PRKD2Q9BZL6 878 aa8.29□□□□□ -1.08
SYNE1-239ENST00000545694 POGKQ9P215 609 aa8.29□□□□□ -1.08
SYNE1-239ENST00000545694 EID1Q9Y6B2 187 aa8.29□□□□□ -1.08
SYNE1-239ENST00000545694 ANKRD36BQ8N2N9 1353 aa8.29□□□□□ -1.08
SYNE1-239ENST00000545694 ARHGAP23Q9P227 1491 aa8.29□□□□□ -1.08
SYNE1-239ENST00000545694 CPS1P31327 1500 aa8.29□□□□□ -1.08
SYNE1-239ENST00000545694 TULP4Q9NRJ4 1543 aa8.29□□□□□ -1.08
SYNE1-239ENST00000545694 GFRA3O60609 400 aa8.28□□□□□ -1.08
SYNE1-239ENST00000545694 PDE3BQ13370 1112 aa8.28□□□□□ -1.08
SYNE1-239ENST00000545694 ERICH6BQ5W0A0 696 aa8.28□□□□□ -1.08
SYNE1-239ENST00000545694 NGEFQ8N5V2 710 aa8.28□□□□□ -1.08
SYNE1-239ENST00000545694 CGNL1Q0VF96 1302 aa8.28□□□□□ -1.08
SYNE1-239ENST00000545694 NEFLP07196 543 aa8.27□□□□□ -1.09
SYNE1-239ENST00000545694 COPS2P61201 443 aa8.27□□□□□ -1.09
SYNE1-239ENST00000545694 CCDC184Q52MB2 194 aa8.27□□□□□ -1.09
SYNE1-239ENST00000545694 EYA1Q99502 592 aa8.27□□□□□ -1.09
SYNE1-239ENST00000545694 TERF2IPQ9NYB0 399 aa8.27□□□□□ -1.09
SYNE1-239ENST00000545694 ZNF142P52746 1687 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-239ENST00000545694 ADAMTSL3P82987 1691 aa8.27□□□□□ -1.09
SYNE1-239ENST00000545694 MED14O60244 1454 aa8.26□□□□□ -1.09
SYNE1-239ENST00000545694 ANKRD26Q9UPS8 1709 aa8.26□□□□□ -1.09
SYNE1-239ENST00000545694 PIK3R4Q99570 1358 aa8.26□□□□□ -1.09
SYNE1-239ENST00000545694 CC2D1BQ5T0F9 858 aaKnown RBP8.26□□□□□ -1.09
SYNE1-239ENST00000545694 NUTM2DQ5VT03 806 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-239ENST00000545694 SLF2Q8IX21 1173 aa8.26□□□□□ -1.09
SYNE1-239ENST00000545694 PRAM1Q96QH2 718 aa8.26□□□□□ -1.09
SYNE1-239ENST00000545694 ATP7BP35670 1465 aa8.26□□□□□ -1.09
SYNE1-239ENST00000545694 PPP2R1AP30153 589 aa8.25□□□□□ -1.09
SYNE1-239ENST00000545694 ARHGEF1Q92888 912 aaKnown RBP8.25□□□□□ -1.09
SYNE1-239ENST00000545694 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.25□□□□□ -1.09
SYNE1-239ENST00000545694 TBX22Q9Y458 520 aa8.25□□□□□ -1.09
SYNE1-239ENST00000545694 BLMP54132 1417 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-239ENST00000545694 ADGRB2O60241 1585 aa8.25□□□□□ -1.09
SYNE1-239ENST00000545694 POLR3AO14802 1390 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-239ENST00000545694 CEP170BQ9Y4F5 1589 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-239ENST00000545694 ADAMTS13Q76LX8 1427 aa8.24□□□□□ -1.09
SYNE1-239ENST00000545694 SMG6Q86US8 1419 aaKnown RBP8.24□□□□□ -1.09
SYNE1-239ENST00000545694 NSD3Q9BZ95 1437 aa8.24□□□□□ -1.09
SYNE1-239ENST00000545694 HDGFL2Q7Z4V5 671 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-239ENST00000545694 KCNV2Q8TDN2 545 aa8.24□□□□□ -1.09
SYNE1-239ENST00000545694 STK26Q9P289 416 aa8.24□□□□□ -1.09
SYNE1-239ENST00000545694 RIMS1Q86UR5 1692 aaKnown RBP8.24□□□□□ -1.09
SYNE1-239ENST00000545694 PTCH1Q13635 1447 aa8.23□□□□□ -1.09
SYNE1-239ENST00000545694 LCE2BO14633 110 aa8.23□□□□□ -1.09
SYNE1-239ENST00000545694 SRPK2P78362 688 aaKnown RBP8.23□□□□□ -1.09
SYNE1-239ENST00000545694 LAPTM4AQ15012 233 aa8.23□□□□□ -1.09
SYNE1-239ENST00000545694 WDR43Q15061 677 aaKnown RBP eCLIP8.23□□□□□ -1.09
SYNE1-239ENST00000545694 TXNDC2Q86VQ3 553 aa8.23□□□□□ -1.09
SYNE1-239ENST00000545694 CARD14Q9BXL6 1004 aa8.23□□□□□ -1.09
SYNE1-239ENST00000545694 SLC12A5Q9H2X9 1139 aa8.23□□□□□ -1.09
SYNE1-239ENST00000545694 KIF20BQ96Q89 1820 aa8.22□□□□□ -1.09
SYNE1-239ENST00000545694 MORC1Q86VD1 984 aa8.22□□□□□ -1.09
SYNE1-239ENST00000545694 CFAP53Q96M91 514 aa8.22□□□□□ -1.09
SYNE1-239ENST00000545694 CDK19Q9BWU1 502 aa8.22□□□□□ -1.09
SYNE1-239ENST00000545694 METP08581 1390 aa8.22□□□□□ -1.09
SYNE1-239ENST00000545694 WASLO00401 505 aaPredicted RBP8.21□□□□□ -1.1
SYNE1-239ENST00000545694 SLC4A3P48751 1232 aa8.21□□□□□ -1.1
SYNE1-239ENST00000545694 PTGDRQ13258 359 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms