RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 PROM2Q8N271 834 aa16.85■□□□□ 0.29
VPS33A-207ENST00000542790 CNGB1Q14028 1251 aaPredicted RBP16.83■□□□□ 0.28
VPS33A-207ENST00000542790 FKBP8Q14318 412 aa16.83■□□□□ 0.28
VPS33A-207ENST00000542790 DDB1Q16531 1140 aa16.83■□□□□ 0.28
VPS33A-207ENST00000542790 LTN1O94822 1766 aa16.82■□□□□ 0.28
VPS33A-207ENST00000542790 IL2RBP14784 551 aa16.82■□□□□ 0.28
VPS33A-207ENST00000542790 NBPF6Q5VWK0 638 aa16.82■□□□□ 0.28
VPS33A-207ENST00000542790 UPF1Q92900 1129 aaKnown RBP eCLIP16.82■□□□□ 0.28
VPS33A-207ENST00000542790 NBPF4Q96M43 638 aa16.82■□□□□ 0.28
VPS33A-207ENST00000542790 EXOC5O00471 708 aa16.81■□□□□ 0.28
VPS33A-207ENST00000542790 DDX10Q13206 875 aaKnown RBP16.81■□□□□ 0.28
VPS33A-207ENST00000542790 FAM196AQ6ZSG2 479 aa16.8■□□□□ 0.28
VPS33A-207ENST00000542790 CCDC125Q86Z20 511 aa16.8■□□□□ 0.28
VPS33A-207ENST00000542790 THSD7AQ9UPZ6 1657 aa16.8■□□□□ 0.28
VPS33A-207ENST00000542790 DISP2A7MBM2 1401 aa16.79■□□□□ 0.28
VPS33A-207ENST00000542790 MTHFSP49914 203 aa16.79■□□□□ 0.28
VPS33A-207ENST00000542790 EIF4A2Q14240 407 aaKnown RBP16.78■□□□□ 0.28
VPS33A-207ENST00000542790 FAM182BQ5T319 152 aa16.78■□□□□ 0.28
VPS33A-207ENST00000542790 ANKRD26Q9UPS8 1709 aa16.77■□□□□ 0.28
VPS33A-207ENST00000542790 USHBP1Q8N6Y0 703 aa16.77■□□□□ 0.28
VPS33A-207ENST00000542790 RAPGEF4Q8WZA2 1011 aa16.77■□□□□ 0.28
VPS33A-207ENST00000542790 PEAK1Q9H792 1746 aa16.76■□□□□ 0.27
VPS33A-207ENST00000542790 ZNF316A6NFI3 1004 aaPredicted RBP16.76■□□□□ 0.27
VPS33A-207ENST00000542790 PRR29P0C7W0 189 aa16.76■□□□□ 0.27
VPS33A-207ENST00000542790 EYA1Q99502 592 aa16.76■□□□□ 0.27
VPS33A-207ENST00000542790 RGPD5Q99666 1765 aa16.76■□□□□ 0.27
VPS33A-207ENST00000542790 MARCH10Q8NA82 808 aaPredicted RBP16.75■□□□□ 0.27
VPS33A-207ENST00000542790 TATP17735 454 aaPredicted RBP16.74■□□□□ 0.27
VPS33A-207ENST00000542790 SF3B2Q13435 895 aaKnown RBP16.74■□□□□ 0.27
VPS33A-207ENST00000542790 IL13P35225 146 aa16.73■□□□□ 0.27
VPS33A-207ENST00000542790 ZCRB1Q8TBF4 217 aaKnown RBP16.73■□□□□ 0.27
VPS33A-207ENST00000542790 OVOS2A0A0G2JMS6 1433 aa16.72■□□□□ 0.27
VPS33A-207ENST00000542790 TNS2Q63HR2 1409 aa16.72■□□□□ 0.27
VPS33A-207ENST00000542790 PPP2R1AP30153 589 aa16.72■□□□□ 0.27
VPS33A-207ENST00000542790 FAM208AQ9UK61 1670 aaKnown RBP16.72■□□□□ 0.27
VPS33A-207ENST00000542790 IGSF1Q8N6C5 1336 aa16.71■□□□□ 0.27
VPS33A-207ENST00000542790 PARP4Q9UKK3 1724 aaKnown RBP16.71■□□□□ 0.27
VPS33A-207ENST00000542790 DIAPH1O60610 1272 aaKnown RBP16.71■□□□□ 0.27
VPS33A-207ENST00000542790 PRKAR2AP13861 404 aaKnown RBP16.71■□□□□ 0.27
VPS33A-207ENST00000542790 DDX54Q8TDD1 881 aaKnown RBP16.71■□□□□ 0.27
VPS33A-207ENST00000542790 CFAP53Q96M91 514 aa16.71■□□□□ 0.27
VPS33A-207ENST00000542790 RALBP1Q15311 655 aa16.7■□□□□ 0.26
VPS33A-207ENST00000542790 NCAPD2Q15021 1401 aa16.7■□□□□ 0.26
VPS33A-207ENST00000542790 PARD3Q8TEW0 1356 aa16.69■□□□□ 0.26
VPS33A-207ENST00000542790 BRWD3Q6RI45 1802 aa16.69■□□□□ 0.26
VPS33A-207ENST00000542790 TRIM37O94972 964 aa16.69■□□□□ 0.26
VPS33A-207ENST00000542790 MEGF6O75095 1541 aa16.69■□□□□ 0.26
VPS33A-207ENST00000542790 BCL9O00512 1426 aa16.69■□□□□ 0.26
VPS33A-207ENST00000542790 LRRC37A3O60309 1634 aa16.68■□□□□ 0.26
VPS33A-207ENST00000542790 CHADLQ6NUI6 762 aa16.68■□□□□ 0.26
VPS33A-207ENST00000542790 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.68■□□□□ 0.26
VPS33A-207ENST00000542790 SPG7Q9UQ90 795 aa16.68■□□□□ 0.26
VPS33A-207ENST00000542790 MAP2P11137 1827 aaKnown RBP16.68■□□□□ 0.26
VPS33A-207ENST00000542790 BAG6P46379 1132 aa16.67■□□□□ 0.26
VPS33A-207ENST00000542790 SULT6B1Q6IMI4 303 aa16.67■□□□□ 0.26
VPS33A-207ENST00000542790 BCL11BQ9C0K0 894 aaPredicted RBP16.66■□□□□ 0.26
VPS33A-207ENST00000542790 PCDH11XQ9BZA7 1347 aa16.66■□□□□ 0.26
VPS33A-207ENST00000542790 PCDH11YQ9BZA8 1340 aa16.66■□□□□ 0.26
VPS33A-207ENST00000542790 PLEKHG2Q9H7P9 1386 aa16.65■□□□□ 0.26
VPS33A-207ENST00000542790 APBA3O96018 575 aa16.65■□□□□ 0.26
VPS33A-207ENST00000542790 AEBP1Q8IUX7 1158 aa16.65■□□□□ 0.26
VPS33A-207ENST00000542790 NUDCQ9Y266 331 aa16.65■□□□□ 0.26
VPS33A-207ENST00000542790 U2SURPO15042 1029 aaKnown RBP16.64■□□□□ 0.25
VPS33A-207ENST00000542790 PLEKHO1Q53GL0 409 aaPredicted RBP16.64■□□□□ 0.25
VPS33A-207ENST00000542790 DEFB132Q7Z7B7 95 aa16.64■□□□□ 0.25
VPS33A-207ENST00000542790 KDRP35968 1356 aa16.64■□□□□ 0.25
VPS33A-207ENST00000542790 AMOTQ4VCS5 1084 aa16.63■□□□□ 0.25
VPS33A-207ENST00000542790 WNK3Q9BYP7 1800 aa16.62■□□□□ 0.25
VPS33A-207ENST00000542790 CYP27B1O15528 508 aa16.62■□□□□ 0.25
VPS33A-207ENST00000542790 ACSBG1Q96GR2 724 aa16.62■□□□□ 0.25
VPS33A-207ENST00000542790 KCNQ2O43526 872 aa16.61■□□□□ 0.25
VPS33A-207ENST00000542790 HMOX1P09601 288 aa16.61■□□□□ 0.25
VPS33A-207ENST00000542790 EN1Q05925 392 aaPredicted RBP16.61■□□□□ 0.25
VPS33A-207ENST00000542790 IFNL2Q8IZJ0 200 aa16.61■□□□□ 0.25
VPS33A-207ENST00000542790 COL3A1P02461 1466 aaPredicted RBP16.61■□□□□ 0.25
VPS33A-207ENST00000542790 NKX1-1Q15270 411 aaPredicted RBP16.6■□□□□ 0.25
VPS33A-207ENST00000542790 PRKRIP1Q9H875 184 aaPredicted RBP16.6■□□□□ 0.25
VPS33A-207ENST00000542790 MYBBP1AQ9BQG0 1328 aaKnown RBP16.6■□□□□ 0.25
VPS33A-207ENST00000542790 RGPD2P0DJD1 1756 aa16.59■□□□□ 0.25
VPS33A-207ENST00000542790 PLSCR1O15162 318 aa16.59■□□□□ 0.25
VPS33A-207ENST00000542790 PHKG2P15735 406 aa16.59■□□□□ 0.25
VPS33A-207ENST00000542790 PRIM1P49642 420 aaKnown RBP16.59■□□□□ 0.25
VPS33A-207ENST00000542790 PTF1AQ7RTS3 328 aa16.59■□□□□ 0.25
VPS33A-207ENST00000542790 CAMKK2Q96RR4 588 aa16.59■□□□□ 0.25
VPS33A-207ENST00000542790 HSP90AB1P08238 724 aaKnown RBP16.58■□□□□ 0.24
VPS33A-207ENST00000542790 U2AF1L5P0DN76 240 aaPredicted RBP16.58■□□□□ 0.24
VPS33A-207ENST00000542790 U2AF1Q01081 240 aaKnown RBP eCLIP16.58■□□□□ 0.24
VPS33A-207ENST00000542790 SYTL4Q96C24 671 aaPredicted RBP16.58■□□□□ 0.24
VPS33A-207ENST00000542790 EZH2Q15910 746 aaKnown RBP16.57■□□□□ 0.24
VPS33A-207ENST00000542790 ZNF530Q6P9A1 599 aaPredicted RBP16.57■□□□□ 0.24
VPS33A-207ENST00000542790 FCHSD2O94868 740 aa16.56■□□□□ 0.24
VPS33A-207ENST00000542790 C1orf141Q5JVX7 400 aa16.56■□□□□ 0.24
VPS33A-207ENST00000542790 EP400Q96L91 3159 aa16.55■□□□□ 0.24
VPS33A-207ENST00000542790 DCAF5Q96JK2 942 aa16.55■□□□□ 0.24
VPS33A-207ENST00000542790 CREBZFQ9NS37 354 aa16.55■□□□□ 0.24
VPS33A-207ENST00000542790 RGPD1P0DJD0 1748 aa16.55■□□□□ 0.24
VPS33A-207ENST00000542790 ANP32CO43423 234 aa16.53■□□□□ 0.24
VPS33A-207ENST00000542790 PRKAR2BP31323 418 aa16.53■□□□□ 0.24
VPS33A-207ENST00000542790 AKAP4Q5JQC9 854 aa16.53■□□□□ 0.24
VPS33A-207ENST00000542790 RSPH6AQ9H0K4 717 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms