RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 ANKRD26Q9UPS8 1709 aa18.2■□□□□ 0.5
SFSWAP-210ENST00000541286 WWC1Q8IX03 1113 aa18.19■□□□□ 0.5
SFSWAP-210ENST00000541286 COL3A1P02461 1466 aaPredicted RBP18.18■□□□□ 0.5
SFSWAP-210ENST00000541286 CSB-PGBD3P0DP91 1061 aa18.18■□□□□ 0.5
SFSWAP-210ENST00000541286 RGPD5Q99666 1765 aa18.18■□□□□ 0.5
SFSWAP-210ENST00000541286 TCP11L2Q8N4U5 519 aa18.18■□□□□ 0.5
SFSWAP-210ENST00000541286 NLRP2Q9NX02 1062 aa18.18■□□□□ 0.5
SFSWAP-210ENST00000541286 SHPRHQ149N8 1683 aa18.18■□□□□ 0.5
SFSWAP-210ENST00000541286 ANKRD24Q8TF21 1146 aa18.17■□□□□ 0.5
SFSWAP-210ENST00000541286 KIF1AQ12756 1690 aa18.17■□□□□ 0.5
SFSWAP-210ENST00000541286 ALS2Q96Q42 1657 aa18.17■□□□□ 0.5
SFSWAP-210ENST00000541286 USP19O94966 1318 aa18.17■□□□□ 0.5
SFSWAP-210ENST00000541286 LTN1O94822 1766 aa18.16■□□□□ 0.5
SFSWAP-210ENST00000541286 NFAT5O94916 1531 aa18.16■□□□□ 0.5
SFSWAP-210ENST00000541286 BTG4Q9NY30 223 aa18.15■□□□□ 0.5
SFSWAP-210ENST00000541286 SEC24BO95487 1268 aa18.15■□□□□ 0.5
SFSWAP-210ENST00000541286 RGPD2P0DJD1 1756 aa18.15■□□□□ 0.5
SFSWAP-210ENST00000541286 SBNO1A3KN83 1393 aa18.15■□□□□ 0.5
SFSWAP-210ENST00000541286 FLT4P35916 1363 aa18.15■□□□□ 0.5
SFSWAP-210ENST00000541286 GOLGB1Q14789 3259 aaKnown RBP18.15■□□□□ 0.5
SFSWAP-210ENST00000541286 AATKQ6ZMQ8 1374 aa18.15■□□□□ 0.5
SFSWAP-210ENST00000541286 PNPLA6Q8IY17 1366 aa18.15■□□□□ 0.5
SFSWAP-210ENST00000541286 IP6K1Q92551 441 aa18.15■□□□□ 0.5
SFSWAP-210ENST00000541286 C8orf37Q96NL8 207 aa18.15■□□□□ 0.5
SFSWAP-210ENST00000541286 LARP1Q6PKG0 1096 aaKnown RBP18.14■□□□□ 0.49
SFSWAP-210ENST00000541286 KCNH5Q8NCM2 988 aa18.14■□□□□ 0.49
SFSWAP-210ENST00000541286 PANK2Q9BZ23 570 aa18.14■□□□□ 0.49
SFSWAP-210ENST00000541286 PHLPP1O60346 1717 aa18.13■□□□□ 0.49
SFSWAP-210ENST00000541286 PLEKHF1Q96S99 279 aa18.12■□□□□ 0.49
SFSWAP-210ENST00000541286 NHSL1Q5SYE7 1610 aa18.11■□□□□ 0.49
SFSWAP-210ENST00000541286 RLBP1P12271 317 aa18.1■□□□□ 0.49
SFSWAP-210ENST00000541286 ARHGEF10O15013 1369 aa18.1■□□□□ 0.49
SFSWAP-210ENST00000541286 HSP90AA2PQ14568 343 aaPredicted RBP18.1■□□□□ 0.49
SFSWAP-210ENST00000541286 TRMT2AQ8IZ69 625 aaKnown RBP18.1■□□□□ 0.49
SFSWAP-210ENST00000541286 MIS18AQ9NYP9 233 aa18.1■□□□□ 0.49
SFSWAP-210ENST00000541286 MCM10Q7L590 875 aa18.1■□□□□ 0.49
SFSWAP-210ENST00000541286 CDK12Q9NYV4 1490 aaPredicted RBP18.09■□□□□ 0.49
SFSWAP-210ENST00000541286 TOM1L2Q6ZVM7 507 aa18.09■□□□□ 0.49
SFSWAP-210ENST00000541286 TSR2Q969E8 191 aaKnown RBP18.09■□□□□ 0.49
SFSWAP-210ENST00000541286 RUNDC1Q96C34 613 aa18.09■□□□□ 0.49
SFSWAP-210ENST00000541286 ERBB3P21860 1342 aa18.09■□□□□ 0.49
SFSWAP-210ENST00000541286 INSRP06213 1382 aa18.09■□□□□ 0.49
SFSWAP-210ENST00000541286 EVA1CP58658 441 aa18.08■□□□□ 0.49
SFSWAP-210ENST00000541286 GLIPR1L2Q4G1C9 344 aa18.08■□□□□ 0.49
SFSWAP-210ENST00000541286 FTSJ3Q8IY81 847 aaKnown RBP18.08■□□□□ 0.49
SFSWAP-210ENST00000541286 CCDC9Q9Y3X0 531 aaKnown RBP18.08■□□□□ 0.49
SFSWAP-210ENST00000541286 KAT6BQ8WYB5 2073 aa18.08■□□□□ 0.49
SFSWAP-210ENST00000541286 CAMTA1Q9Y6Y1 1673 aa18.08■□□□□ 0.48
SFSWAP-210ENST00000541286 RIPK4P57078 832 aa18.08■□□□□ 0.48
SFSWAP-210ENST00000541286 COL16A1Q07092 1604 aaPredicted RBP18.08■□□□□ 0.48
SFSWAP-210ENST00000541286 MTHFSDQ2M296 383 aaKnown RBP18.08■□□□□ 0.48
SFSWAP-210ENST00000541286 PNNQ9H307 717 aaKnown RBP18.08■□□□□ 0.48
SFSWAP-210ENST00000541286 RARSP54136 660 aaKnown RBP18.07■□□□□ 0.48
SFSWAP-210ENST00000541286 PCDHB15Q9Y5E8 787 aa18.07■□□□□ 0.48
SFSWAP-210ENST00000541286 MAPK8IP3Q9UPT6 1336 aa18.07■□□□□ 0.48
SFSWAP-210ENST00000541286 PHRF1Q9P1Y6 1649 aaKnown RBP18.06■□□□□ 0.48
SFSWAP-210ENST00000541286 SLIT3O75094 1523 aa18.06■□□□□ 0.48
SFSWAP-210ENST00000541286 TMPOP42166 694 aaKnown RBP18.06■□□□□ 0.48
SFSWAP-210ENST00000541286 PDE3AQ14432 1141 aa18.06■□□□□ 0.48
SFSWAP-210ENST00000541286 FAM182BQ5T319 152 aa18.05■□□□□ 0.48
SFSWAP-210ENST00000541286 NGLY1Q96IV0 654 aa18.05■□□□□ 0.48
SFSWAP-210ENST00000541286 UPF2Q9HAU5 1272 aaKnown RBP18.05■□□□□ 0.48
SFSWAP-210ENST00000541286 TRIM35Q9UPQ4 493 aa18.04■□□□□ 0.48
SFSWAP-210ENST00000541286 HSP90AA1P07900 732 aaKnown RBP18.04■□□□□ 0.48
SFSWAP-210ENST00000541286 PDZRN3Q9UPQ7 1066 aa18.04■□□□□ 0.48
SFSWAP-210ENST00000541286 ELL2O00472 640 aaPredicted RBP18.03■□□□□ 0.48
SFSWAP-210ENST00000541286 IGSF1Q8N6C5 1336 aa18.02■□□□□ 0.48
SFSWAP-210ENST00000541286 XRCC6P12956 609 aaKnown RBP eCLIP18.02■□□□□ 0.48
SFSWAP-210ENST00000541286 FCHSD2O94868 740 aa18.02■□□□□ 0.48
SFSWAP-210ENST00000541286 KRT24Q2M2I5 525 aa18.02■□□□□ 0.48
SFSWAP-210ENST00000541286 ARID3AQ99856 593 aa18.02■□□□□ 0.48
SFSWAP-210ENST00000541286 SMC4Q9NTJ3 1288 aa18.02■□□□□ 0.48
SFSWAP-210ENST00000541286 MPRIPQ6WCQ1 1025 aa18.02■□□□□ 0.47
SFSWAP-210ENST00000541286 AHDC1Q5TGY3 1603 aaPredicted RBP18.01■□□□□ 0.47
SFSWAP-210ENST00000541286 BECN1Q14457 450 aa18.01■□□□□ 0.47
SFSWAP-210ENST00000541286 CRYBG1Q9Y4K1 1723 aa18.01■□□□□ 0.47
SFSWAP-210ENST00000541286 LRP6O75581 1613 aa18.01■□□□□ 0.47
SFSWAP-210ENST00000541286 A0A0G2JS52 829 aa18.01■□□□□ 0.47
SFSWAP-210ENST00000541286 ITPRIPQ8IWB1 547 aa18.01■□□□□ 0.47
SFSWAP-210ENST00000541286 DDX54Q8TDD1 881 aaKnown RBP18■□□□□ 0.47
SFSWAP-210ENST00000541286 LGR6Q9HBX8 967 aa18■□□□□ 0.47
SFSWAP-210ENST00000541286 MEX3CQ5U5Q3 659 aaKnown RBP18■□□□□ 0.47
SFSWAP-210ENST00000541286 MFAP1P55081 439 aaKnown RBP17.99■□□□□ 0.47
SFSWAP-210ENST00000541286 ABCA3Q99758 1704 aa17.99■□□□□ 0.47
SFSWAP-210ENST00000541286 EXOSC9Q06265 439 aaKnown RBP17.98■□□□□ 0.47
SFSWAP-210ENST00000541286 MYH16Q9H6N6 1097 aa17.98■□□□□ 0.47
SFSWAP-210ENST00000541286 RWDD1Q9H446 243 aaPredicted RBP17.98■□□□□ 0.47
SFSWAP-210ENST00000541286 COL18A1P39060 1754 aa17.97■□□□□ 0.47
SFSWAP-210ENST00000541286 COL5A2P05997 1499 aaPredicted RBP17.97■□□□□ 0.47
SFSWAP-210ENST00000541286 MEGF6O75095 1541 aa17.96■□□□□ 0.47
SFSWAP-210ENST00000541286 GOLGA6L3A6NEY3 463 aa17.96■□□□□ 0.47
SFSWAP-210ENST00000541286 NFE2L2Q16236 605 aa17.96■□□□□ 0.47
SFSWAP-210ENST00000541286 ZKSCAN2Q63HK3 967 aa17.95■□□□□ 0.46
SFSWAP-210ENST00000541286 ZNF530Q6P9A1 599 aaPredicted RBP17.95■□□□□ 0.46
SFSWAP-210ENST00000541286 FAM98CQ17RN3 349 aaKnown RBP17.95■□□□□ 0.46
SFSWAP-210ENST00000541286 DZIP1LQ8IYY4 767 aaKnown RBP17.95■□□□□ 0.46
SFSWAP-210ENST00000541286 WDR17Q8IZU2 1322 aa17.95■□□□□ 0.46
SFSWAP-210ENST00000541286 JCADQ9P266 1359 aa17.95■□□□□ 0.46
SFSWAP-210ENST00000541286 UTRNP46939 3433 aa17.95■□□□□ 0.46
SFSWAP-210ENST00000541286 CPDO75976 1380 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms