RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 C8orf58Q8NAV2 365 aa15.85■□□□□ 0.13
AP003559.1-201ENST00000540906 NHSL1Q5SYE7 1610 aa15.85■□□□□ 0.13
AP003559.1-201ENST00000540906 UBAP1LF5GYI3 381 aa15.84■□□□□ 0.13
AP003559.1-201ENST00000540906 CHRNA2Q15822 529 aa15.84■□□□□ 0.13
AP003559.1-201ENST00000540906 LMO7Q8WWI1 1683 aa15.84■□□□□ 0.13
AP003559.1-201ENST00000540906 ELL2O00472 640 aaPredicted RBP15.84■□□□□ 0.13
AP003559.1-201ENST00000540906 VAMP4O75379 141 aa15.84■□□□□ 0.13
AP003559.1-201ENST00000540906 CT47B1P0C2W7 299 aaPredicted RBP15.84■□□□□ 0.13
AP003559.1-201ENST00000540906 CALD1Q05682 793 aaKnown RBP15.84■□□□□ 0.13
AP003559.1-201ENST00000540906 SMC4Q9NTJ3 1288 aa15.84■□□□□ 0.13
AP003559.1-201ENST00000540906 MIS18AQ9NYP9 233 aa15.84■□□□□ 0.13
AP003559.1-201ENST00000540906 COG6Q9Y2V7 657 aa15.84■□□□□ 0.13
AP003559.1-201ENST00000540906 ABCA3Q99758 1704 aa15.83■□□□□ 0.13
AP003559.1-201ENST00000540906 CANXP27824 592 aaKnown RBP15.83■□□□□ 0.12
AP003559.1-201ENST00000540906 GAS2L2Q8NHY3 880 aa15.83■□□□□ 0.12
AP003559.1-201ENST00000540906 TSHZ2Q9NRE2 1034 aa15.83■□□□□ 0.12
AP003559.1-201ENST00000540906 CHL1O00533 1208 aa15.82■□□□□ 0.12
AP003559.1-201ENST00000540906 TCERG1O14776 1098 aaKnown RBP15.82■□□□□ 0.12
AP003559.1-201ENST00000540906 CLUAP1Q96AJ1 413 aa15.82■□□□□ 0.12
AP003559.1-201ENST00000540906 FAM208AQ9UK61 1670 aaKnown RBP15.82■□□□□ 0.12
AP003559.1-201ENST00000540906 KIAA0232Q92628 1395 aa15.82■□□□□ 0.12
AP003559.1-201ENST00000540906 ERBB3P21860 1342 aa15.82■□□□□ 0.12
AP003559.1-201ENST00000540906 PDE3AQ14432 1141 aa15.82■□□□□ 0.12
AP003559.1-201ENST00000540906 IL17REQ8NFR9 667 aa15.82■□□□□ 0.12
AP003559.1-201ENST00000540906 MAP3K5Q99683 1374 aa15.81■□□□□ 0.12
AP003559.1-201ENST00000540906 NOB1Q9ULX3 412 aaKnown RBP15.8■□□□□ 0.12
AP003559.1-201ENST00000540906 TWISTNBQ3B726 338 aaPredicted RBP15.8■□□□□ 0.12
AP003559.1-201ENST00000540906 GNAT3A8MTJ3 354 aa15.79■□□□□ 0.12
AP003559.1-201ENST00000540906 TOM1O60784 492 aa15.79■□□□□ 0.12
AP003559.1-201ENST00000540906 TRIM27P14373 513 aa15.79■□□□□ 0.12
AP003559.1-201ENST00000540906 SKAP1Q86WV1 359 aa15.79■□□□□ 0.12
AP003559.1-201ENST00000540906 PELP1Q8IZL8 1130 aaKnown RBP15.79■□□□□ 0.12
AP003559.1-201ENST00000540906 MRPL50Q8N5N7 158 aaKnown RBP15.79■□□□□ 0.12
AP003559.1-201ENST00000540906 ZKSCAN2Q63HK3 967 aa15.78■□□□□ 0.12
AP003559.1-201ENST00000540906 RTF1Q92541 710 aaKnown RBP15.78■□□□□ 0.12
AP003559.1-201ENST00000540906 CPDO75976 1380 aa15.78■□□□□ 0.12
AP003559.1-201ENST00000540906 ROBO1Q9Y6N7 1651 aa15.78■□□□□ 0.12
AP003559.1-201ENST00000540906 ALDH1L2Q3SY69 923 aa15.78■□□□□ 0.12
AP003559.1-201ENST00000540906 KDM2BQ8NHM5 1336 aa15.77■□□□□ 0.12
AP003559.1-201ENST00000540906 LGR6Q9HBX8 967 aa15.77■□□□□ 0.11
AP003559.1-201ENST00000540906 HTATSF1O43719 755 aaKnown RBP15.76■□□□□ 0.11
AP003559.1-201ENST00000540906 VIRMAQ69YN4 1812 aaKnown RBP15.76■□□□□ 0.11
AP003559.1-201ENST00000540906 DZIP1LQ8IYY4 767 aaKnown RBP15.75■□□□□ 0.11
AP003559.1-201ENST00000540906 MEGF6O75095 1541 aa15.75■□□□□ 0.11
AP003559.1-201ENST00000540906 ABCC6O95255 1503 aa15.75■□□□□ 0.11
AP003559.1-201ENST00000540906 ZNF530Q6P9A1 599 aaPredicted RBP15.75■□□□□ 0.11
AP003559.1-201ENST00000540906 ATF7IPQ6VMQ6 1270 aa15.75■□□□□ 0.11
AP003559.1-201ENST00000540906 NLRP2Q9NX02 1062 aa15.75■□□□□ 0.11
AP003559.1-201ENST00000540906 TSPYL4Q9UJ04 414 aa15.75■□□□□ 0.11
AP003559.1-201ENST00000540906 CEMIPQ8WUJ3 1361 aa15.74■□□□□ 0.11
AP003559.1-201ENST00000540906 BRPF1P55201 1214 aaPredicted RBP15.73■□□□□ 0.11
AP003559.1-201ENST00000540906 MVPQ14764 893 aaKnown RBP15.73■□□□□ 0.11
AP003559.1-201ENST00000540906 TMEM57Q8N5G2 664 aa15.73■□□□□ 0.11
AP003559.1-201ENST00000540906 IGHDP01880 384 aa15.73■□□□□ 0.11
AP003559.1-201ENST00000540906 PLEKHO1Q53GL0 409 aaPredicted RBP15.73■□□□□ 0.11
AP003559.1-201ENST00000540906 MPRIPQ6WCQ1 1025 aa15.73■□□□□ 0.11
AP003559.1-201ENST00000540906 ZNF428Q96B54 188 aa15.72■□□□□ 0.11
AP003559.1-201ENST00000540906 PCDHB15Q9Y5E8 787 aa15.72■□□□□ 0.11
AP003559.1-201ENST00000540906 KIF16BQ96L93 1317 aa15.72■□□□□ 0.11
AP003559.1-201ENST00000540906 CSB-PGBD3P0DP91 1061 aa15.71■□□□□ 0.11
AP003559.1-201ENST00000540906 AKAP4Q5JQC9 854 aa15.71■□□□□ 0.11
AP003559.1-201ENST00000540906 FTSJ3Q8IY81 847 aaKnown RBP15.71■□□□□ 0.11
AP003559.1-201ENST00000540906 PRDM11Q9NQV5 511 aa15.71■□□□□ 0.11
AP003559.1-201ENST00000540906 AHDC1Q5TGY3 1603 aaPredicted RBP15.71■□□□□ 0.11
AP003559.1-201ENST00000540906 KDM3BQ7LBC6 1761 aa15.71■□□□□ 0.11
AP003559.1-201ENST00000540906 ADAMTS7Q9UKP4 1686 aa15.7■□□□□ 0.1
AP003559.1-201ENST00000540906 COL5A2P05997 1499 aaPredicted RBP15.7■□□□□ 0.1
AP003559.1-201ENST00000540906 KCNQ3O43525 872 aa15.7■□□□□ 0.1
AP003559.1-201ENST00000540906 TAF7Q15545 349 aaPredicted RBP15.7■□□□□ 0.1
AP003559.1-201ENST00000540906 RGS12O14924 1447 aa15.7■□□□□ 0.1
AP003559.1-201ENST00000540906 RNMTO43148 476 aaKnown RBP15.69■□□□□ 0.1
AP003559.1-201ENST00000540906 AMOTQ4VCS5 1084 aa15.69■□□□□ 0.1
AP003559.1-201ENST00000540906 SIPA1L3O60292 1781 aaPredicted RBP15.69■□□□□ 0.1
AP003559.1-201ENST00000540906 ITPRIPQ8IWB1 547 aa15.68■□□□□ 0.1
AP003559.1-201ENST00000540906 HAP1P54257 671 aaPredicted RBP15.68■□□□□ 0.1
AP003559.1-201ENST00000540906 PKD1L3Q7Z443 1732 aa15.68■□□□□ 0.1
AP003559.1-201ENST00000540906 KDM6AO15550 1401 aaPredicted RBP15.67■□□□□ 0.1
AP003559.1-201ENST00000540906 IPO8O15397 1037 aaKnown RBP15.67■□□□□ 0.1
AP003559.1-201ENST00000540906 G2E3Q7L622 706 aa15.67■□□□□ 0.1
AP003559.1-201ENST00000540906 ABCC4O15439 1325 aa15.66■□□□□ 0.1
AP003559.1-201ENST00000540906 WDR17Q8IZU2 1322 aa15.66■□□□□ 0.1
AP003559.1-201ENST00000540906 CENPQQ7L2Z9 268 aaPredicted RBP15.66■□□□□ 0.1
AP003559.1-201ENST00000540906 RAPGEF4Q8WZA2 1011 aa15.66■□□□□ 0.1
AP003559.1-201ENST00000540906 COL16A1Q07092 1604 aaPredicted RBP15.66■□□□□ 0.1
AP003559.1-201ENST00000540906 TATP17735 454 aaPredicted RBP15.66■□□□□ 0.1
AP003559.1-201ENST00000540906 C1orf141Q5JVX7 400 aa15.66■□□□□ 0.1
AP003559.1-201ENST00000540906 ARHGAP45Q92619 1136 aa15.66■□□□□ 0.1
AP003559.1-201ENST00000540906 NECTIN2Q92692 538 aa15.66■□□□□ 0.1
AP003559.1-201ENST00000540906 SCN11AQ9UI33 1791 aa15.65■□□□□ 0.1
AP003559.1-201ENST00000540906 COL22A1Q8NFW1 1626 aaPredicted RBP15.65■□□□□ 0.1
AP003559.1-201ENST00000540906 CYP27B1O15528 508 aa15.64■□□□□ 0.09
AP003559.1-201ENST00000540906 MS4A1P11836 297 aa15.64■□□□□ 0.09
AP003559.1-201ENST00000540906 PHKG2P15735 406 aa15.64■□□□□ 0.09
AP003559.1-201ENST00000540906 LARP1Q6PKG0 1096 aaKnown RBP15.64■□□□□ 0.09
AP003559.1-201ENST00000540906 STRN4Q9NRL3 753 aa15.64■□□□□ 0.09
AP003559.1-201ENST00000540906 PHLPP1O60346 1717 aa15.64■□□□□ 0.09
AP003559.1-201ENST00000540906 HSPA1LP34931 641 aa15.64■□□□□ 0.09
AP003559.1-201ENST00000540906 EIF4A1P60842 406 aaKnown RBP15.64■□□□□ 0.09
AP003559.1-201ENST00000540906 BABAM1Q9NWV8 329 aa15.64■□□□□ 0.09
AP003559.1-201ENST00000540906 DDX19BQ9UMR2 479 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms