RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 DZIP3Q86Y13 1208 aaKnown RBP8.49□□□□□ -1.05
PRKDC-209ENST00000540819 PUS7Q96PZ0 661 aaKnown RBP8.49□□□□□ -1.05
PRKDC-209ENST00000540819 RAB15P59190 212 aa8.48□□□□□ -1.05
PRKDC-209ENST00000540819 IRF5Q13568 498 aa8.48□□□□□ -1.05
PRKDC-209ENST00000540819 CCDC155Q8N6L0 562 aa8.48□□□□□ -1.05
PRKDC-209ENST00000540819 TRIM52Q96A61 297 aa8.48□□□□□ -1.05
PRKDC-209ENST00000540819 AGBL1Q96MI9 1066 aa8.48□□□□□ -1.05
PRKDC-209ENST00000540819 CNTNAP3BQ96NU0 1288 aa8.48□□□□□ -1.05
PRKDC-209ENST00000540819 CNTNAP3Q9BZ76 1288 aa8.48□□□□□ -1.05
PRKDC-209ENST00000540819 POLMQ9NP87 494 aaPredicted RBP8.48□□□□□ -1.05
PRKDC-209ENST00000540819 FBXO31Q5XUX0 539 aaPredicted RBP8.47□□□□□ -1.05
PRKDC-209ENST00000540819 GPR161Q8N6U8 529 aaKnown RBP8.46□□□□□ -1.06
PRKDC-209ENST00000540819 NANOS1Q8WY41 292 aaKnown RBP8.46□□□□□ -1.06
PRKDC-209ENST00000540819 INSM2Q96T92 566 aaPredicted RBP8.46□□□□□ -1.06
PRKDC-209ENST00000540819 ZNF395Q9H8N7 513 aaPredicted RBP8.46□□□□□ -1.06
PRKDC-209ENST00000540819 SLC35F4A4IF30 521 aa8.45□□□□□ -1.06
PRKDC-209ENST00000540819 PPP1R15AO75807 674 aaPredicted RBP8.45□□□□□ -1.06
PRKDC-209ENST00000540819 USP17L8P0C7I0 530 aa8.45□□□□□ -1.06
PRKDC-209ENST00000540819 CTSOP43234 321 aaPredicted RBP8.45□□□□□ -1.06
PRKDC-209ENST00000540819 EPS8L1Q8TE68 723 aa8.45□□□□□ -1.06
PRKDC-209ENST00000540819 OCSTAMPQ9BR26 566 aa8.45□□□□□ -1.06
PRKDC-209ENST00000540819 COL25A1Q9BXS0 654 aaPredicted RBP8.45□□□□□ -1.06
PRKDC-209ENST00000540819 TMPRSS4Q9NRS4 437 aa8.45□□□□□ -1.06
PRKDC-209ENST00000540819 SV2AQ7L0J3 742 aa8.44□□□□□ -1.06
PRKDC-209ENST00000540819 VWA5B2Q8N398 1253 aa8.44□□□□□ -1.06
PRKDC-209ENST00000540819 CDC14CA4D256 554 aa8.43□□□□□ -1.06
PRKDC-209ENST00000540819 EIF5BO60841 1220 aaKnown RBP8.43□□□□□ -1.06
PRKDC-209ENST00000540819 AMOTL2Q9Y2J4 779 aa8.43□□□□□ -1.06
PRKDC-209ENST00000540819 ERVH48-1M5A8F1 160 aa8.42□□□□□ -1.06
PRKDC-209ENST00000540819 ITGA6P23229 1130 aa8.42□□□□□ -1.06
PRKDC-209ENST00000540819 RFC5P40937 340 aa8.42□□□□□ -1.06
PRKDC-209ENST00000540819 ZNF784Q8NCA9 323 aaPredicted RBP8.42□□□□□ -1.06
PRKDC-209ENST00000540819 HMX1Q9NP08 348 aaPredicted RBP8.42□□□□□ -1.06
PRKDC-209ENST00000540819 ADH1AP07327 375 aa8.41□□□□□ -1.06
PRKDC-209ENST00000540819 PTGIRP43119 386 aa8.41□□□□□ -1.06
PRKDC-209ENST00000540819 KRT76Q01546 638 aa8.41□□□□□ -1.06
PRKDC-209ENST00000540819 KCNMA1Q12791 1236 aa8.41□□□□□ -1.06
PRKDC-209ENST00000540819 TMEM259Q4ZIN3 620 aa8.41□□□□□ -1.06
PRKDC-209ENST00000540819 POM121Q96HA1 1249 aa8.41□□□□□ -1.06
PRKDC-209ENST00000540819 ACIN1Q9UKV3 1341 aaKnown RBP8.4□□□□□ -1.06
PRKDC-209ENST00000540819 KCNA1Q09470 495 aa8.4□□□□□ -1.06
PRKDC-209ENST00000540819 RNF217Q8TC41 542 aa8.4□□□□□ -1.06
PRKDC-209ENST00000540819 ADD1P35611 737 aaKnown RBP8.39□□□□□ -1.07
PRKDC-209ENST00000540819 SEPT12Q8IYM1 358 aa8.39□□□□□ -1.07
PRKDC-209ENST00000540819 SVOPQ8N4V2 548 aa8.39□□□□□ -1.07
PRKDC-209ENST00000540819 ADAMTS8Q9UP79 889 aa8.39□□□□□ -1.07
PRKDC-209ENST00000540819 ESPNB1AK53 854 aa8.38□□□□□ -1.07
PRKDC-209ENST00000540819 RNF225M0QZC1 329 aaPredicted RBP8.38□□□□□ -1.07
PRKDC-209ENST00000540819 LILRA1O75019 489 aa8.38□□□□□ -1.07
PRKDC-209ENST00000540819 LYSMD3Q7Z3D4 306 aa8.38□□□□□ -1.07
PRKDC-209ENST00000540819 TMEM151AQ8N4L1 468 aa8.38□□□□□ -1.07
PRKDC-209ENST00000540819 RNFT1Q5M7Z0 435 aa8.37□□□□□ -1.07
PRKDC-209ENST00000540819 CYLDQ9NQC7 956 aa8.37□□□□□ -1.07
PRKDC-209ENST00000540819 ZBBXA8MT70 800 aa8.36□□□□□ -1.07
PRKDC-209ENST00000540819 CCDC125Q86Z20 511 aa8.36□□□□□ -1.07
PRKDC-209ENST00000540819 PCDHB9Q9Y5E1 797 aa8.36□□□□□ -1.07
PRKDC-209ENST00000540819 GDF11O95390 407 aa8.35□□□□□ -1.07
PRKDC-209ENST00000540819 BRD1O95696 1058 aa8.35□□□□□ -1.07
PRKDC-209ENST00000540819 MARSP56192 900 aaKnown RBP8.35□□□□□ -1.07
PRKDC-209ENST00000540819 ZNF385CQ66K41 422 aaPredicted RBP8.35□□□□□ -1.07
PRKDC-209ENST00000540819 PRICKLE2Q7Z3G6 844 aa8.35□□□□□ -1.07
PRKDC-209ENST00000540819 USP35Q9P2H5 1018 aa8.35□□□□□ -1.07
PRKDC-209ENST00000540819 COG6Q9Y2V7 657 aa8.35□□□□□ -1.07
PRKDC-209ENST00000540819 ZNF330Q9Y3S2 320 aaPredicted RBP8.35□□□□□ -1.07
PRKDC-209ENST00000540819 GIGYF1O75420 1035 aaPredicted RBP8.34□□□□□ -1.07
PRKDC-209ENST00000540819 RASSF7Q02833 373 aa8.34□□□□□ -1.07
PRKDC-209ENST00000540819 TRIM34Q9BYJ4 488 aa8.34□□□□□ -1.07
PRKDC-209ENST00000540819 ESF1Q9H501 851 aaKnown RBP8.34□□□□□ -1.07
PRKDC-209ENST00000540819 SENP3-EIF4A1A0A087X0R7 540 aa8.33□□□□□ -1.08
PRKDC-209ENST00000540819 ATP5J2-PTCD1G3V325 749 aa8.33□□□□□ -1.08
PRKDC-209ENST00000540819 SLURP2P0DP57 97 aa8.33□□□□□ -1.08
PRKDC-209ENST00000540819 RNF144AP50876 292 aaPredicted RBP8.33□□□□□ -1.08
PRKDC-209ENST00000540819 RNF20Q5VTR2 975 aa8.33□□□□□ -1.08
PRKDC-209ENST00000540819 KDF1Q8NAX2 398 aaPredicted RBP8.33□□□□□ -1.08
PRKDC-209ENST00000540819 MEN1O00255 615 aa8.32□□□□□ -1.08
PRKDC-209ENST00000540819 RHOQP17081 205 aa8.32□□□□□ -1.08
PRKDC-209ENST00000540819 MCCD1P59942 119 aaPredicted RBP8.32□□□□□ -1.08
PRKDC-209ENST00000540819 FOXR1Q6PIV2 292 aa8.32□□□□□ -1.08
PRKDC-209ENST00000540819 ZNF592Q92610 1267 aa8.32□□□□□ -1.08
PRKDC-209ENST00000540819 MAP3K10Q02779 954 aa8.31□□□□□ -1.08
PRKDC-209ENST00000540819 CCDC27Q2M243 656 aa8.31□□□□□ -1.08
PRKDC-209ENST00000540819 WHAMMQ8TF30 809 aa8.31□□□□□ -1.08
PRKDC-209ENST00000540819 NLRP3Q96P20 1036 aa8.31□□□□□ -1.08
PRKDC-209ENST00000540819 USTQ9Y2C2 406 aa8.31□□□□□ -1.08
PRKDC-209ENST00000540819 ADAMTS2O95450 1211 aa8.3□□□□□ -1.08
PRKDC-209ENST00000540819 FBXO45P0C2W1 286 aa8.3□□□□□ -1.08
PRKDC-209ENST00000540819 GPC1P35052 558 aa8.3□□□□□ -1.08
PRKDC-209ENST00000540819 SLC27A3Q5K4L6 730 aa8.3□□□□□ -1.08
PRKDC-209ENST00000540819 CC2D2BQ6DHV5 1058 aa8.3□□□□□ -1.08
PRKDC-209ENST00000540819 RIPOR1Q6ZS17 1223 aa8.3□□□□□ -1.08
PRKDC-209ENST00000540819 GMCL1Q96IK5 515 aa8.3□□□□□ -1.08
PRKDC-209ENST00000540819 A0A1W2PRU2 124 aa8.29□□□□□ -1.08
PRKDC-209ENST00000540819 ARHGEF15O94989 841 aa8.29□□□□□ -1.08
PRKDC-209ENST00000540819 GSK3AP49840 483 aa8.29□□□□□ -1.08
PRKDC-209ENST00000540819 SRSF11Q05519 484 aaKnown RBP8.29□□□□□ -1.08
PRKDC-209ENST00000540819 SCARF2Q96GP6 870 aaPredicted RBP8.29□□□□□ -1.08
PRKDC-209ENST00000540819 ENAMQ9NRM1 1142 aa8.29□□□□□ -1.08
PRKDC-209ENST00000540819 IRS1P35568 1242 aa8.28□□□□□ -1.08
PRKDC-209ENST00000540819 BANK1Q8NDB2 785 aa8.28□□□□□ -1.08
PRKDC-209ENST00000540819 H7C1W4 665 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms