RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 TSC1Q92574 1164 aa15.63■□□□□ 0.09
MSH6-210ENST00000540021 TMEM63CQ9P1W3 806 aa15.63■□□□□ 0.09
MSH6-210ENST00000540021 SASS6Q6UVJ0 657 aa15.63■□□□□ 0.09
MSH6-210ENST00000540021 ARHGAP45Q92619 1136 aa15.63■□□□□ 0.09
MSH6-210ENST00000540021 WDR33Q9C0J8 1336 aaKnown RBP15.63■□□□□ 0.09
MSH6-210ENST00000540021 TTC37Q6PGP7 1564 aa15.63■□□□□ 0.09
MSH6-210ENST00000540021 C17orf53Q8N3J3 647 aaPredicted RBP15.62■□□□□ 0.09
MSH6-210ENST00000540021 MX1P20591 662 aa15.62■□□□□ 0.09
MSH6-210ENST00000540021 ANKRD44Q8N8A2 993 aa15.62■□□□□ 0.09
MSH6-210ENST00000540021 HSP90B1P14625 803 aaKnown RBP15.62■□□□□ 0.09
MSH6-210ENST00000540021 CWC27Q6UX04 472 aaKnown RBP15.62■□□□□ 0.09
MSH6-210ENST00000540021 FERMT3Q86UX7 667 aa15.62■□□□□ 0.09
MSH6-210ENST00000540021 SIRT2Q8IXJ6 389 aa15.62■□□□□ 0.09
MSH6-210ENST00000540021 PPIP5K1Q6PFW1 1433 aa15.62■□□□□ 0.09
MSH6-210ENST00000540021 ZNF518AQ6AHZ1 1483 aa15.62■□□□□ 0.09
MSH6-210ENST00000540021 PHF23Q9BUL5 403 aaPredicted RBP15.61■□□□□ 0.09
MSH6-210ENST00000540021 NCKAP5LQ9HCH0 1330 aa15.61■□□□□ 0.09
MSH6-210ENST00000540021 CEP85Q6P2H3 762 aa15.61■□□□□ 0.09
MSH6-210ENST00000540021 MTERF4Q7Z6M4 381 aaKnown RBP15.6■□□□□ 0.09
MSH6-210ENST00000540021 NOL7Q9UMY1 257 aaKnown RBP15.6■□□□□ 0.09
MSH6-210ENST00000540021 RTEL1-TNFRSF6BF6WH68 1400 aa15.6■□□□□ 0.09
MSH6-210ENST00000540021 ADCY5O95622 1261 aa15.6■□□□□ 0.09
MSH6-210ENST00000540021 GNAI3P08754 354 aa15.6■□□□□ 0.09
MSH6-210ENST00000540021 PDE1AP54750 535 aa15.6■□□□□ 0.09
MSH6-210ENST00000540021 BICD2Q8TD16 824 aa15.6■□□□□ 0.09
MSH6-210ENST00000540021 GPT2Q8TD30 523 aa15.6■□□□□ 0.09
MSH6-210ENST00000540021 CAMK4Q16566 473 aa15.6■□□□□ 0.09
MSH6-210ENST00000540021 PPP1R9BQ96SB3 815 aa15.6■□□□□ 0.09
MSH6-210ENST00000540021 ZNF445P59923 1031 aa15.59■□□□□ 0.09
MSH6-210ENST00000540021 ZNF771Q7L3S4 317 aaPredicted RBP15.59■□□□□ 0.09
MSH6-210ENST00000540021 ZMYM3Q14202 1370 aa15.59■□□□□ 0.09
MSH6-210ENST00000540021 KIF2CQ99661 725 aa15.59■□□□□ 0.09
MSH6-210ENST00000540021 USP48Q86UV5 1035 aa15.59■□□□□ 0.09
MSH6-210ENST00000540021 SPDYE4A6NLX3 237 aa15.58■□□□□ 0.09
MSH6-210ENST00000540021 CCDC83Q8IWF9 413 aa15.58■□□□□ 0.09
MSH6-210ENST00000540021 CCT4P50991 539 aaKnown RBP15.58■□□□□ 0.08
MSH6-210ENST00000540021 HMGN5P82970 282 aaKnown RBP15.58■□□□□ 0.08
MSH6-210ENST00000540021 GIMAP6Q6P9H5 292 aa15.58■□□□□ 0.08
MSH6-210ENST00000540021 SLC52A1Q9NWF4 448 aa15.58■□□□□ 0.08
MSH6-210ENST00000540021 NSFL1CQ9UNZ2 370 aaKnown RBP15.58■□□□□ 0.08
MSH6-210ENST00000540021 CNPY2Q9Y2B0 182 aa15.58■□□□□ 0.08
MSH6-210ENST00000540021 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.58■□□□□ 0.08
MSH6-210ENST00000540021 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.58■□□□□ 0.08
MSH6-210ENST00000540021 ZKSCAN1P17029 563 aaPredicted RBP15.58■□□□□ 0.08
MSH6-210ENST00000540021 TRIM5Q9C035 493 aa15.58■□□□□ 0.08
MSH6-210ENST00000540021 SPG7Q9UQ90 795 aa15.58■□□□□ 0.08
MSH6-210ENST00000540021 NUDT16Q96DE0 195 aaKnown RBP15.57■□□□□ 0.08
MSH6-210ENST00000540021 CEBPZQ03701 1054 aaKnown RBP15.57■□□□□ 0.08
MSH6-210ENST00000540021 STK3Q13188 491 aa15.57■□□□□ 0.08
MSH6-210ENST00000540021 KIF3AQ9Y496 699 aa15.57■□□□□ 0.08
MSH6-210ENST00000540021 LRRFIP2Q9Y608 721 aaKnown RBP15.57■□□□□ 0.08
MSH6-210ENST00000540021 NLRP1Q9C000 1473 aa15.57■□□□□ 0.08
MSH6-210ENST00000540021 NPHP1O15259 732 aa15.57■□□□□ 0.08
MSH6-210ENST00000540021 C9orf78Q9NZ63 289 aaPredicted RBP15.57■□□□□ 0.08
MSH6-210ENST00000540021 GADD45BO75293 160 aaPredicted RBP15.56■□□□□ 0.08
MSH6-210ENST00000540021 IFIT2P09913 472 aaKnown RBP15.56■□□□□ 0.08
MSH6-210ENST00000540021 CASTP20810 708 aaKnown RBP15.56■□□□□ 0.08
MSH6-210ENST00000540021 GPATCH3Q96I76 525 aa15.56■□□□□ 0.08
MSH6-210ENST00000540021 H3BQV1 296 aa15.56■□□□□ 0.08
MSH6-210ENST00000540021 DYNC1I1O14576 645 aa15.56■□□□□ 0.08
MSH6-210ENST00000540021 SRGAP3O43295 1099 aa15.56■□□□□ 0.08
MSH6-210ENST00000540021 IFFO2Q5TF58 517 aa15.56■□□□□ 0.08
MSH6-210ENST00000540021 PREX2Q70Z35 1606 aa15.56■□□□□ 0.08
MSH6-210ENST00000540021 CLASP1Q7Z460 1538 aa15.55■□□□□ 0.08
MSH6-210ENST00000540021 GOLGA6L19H0YKK7 550 aa15.55■□□□□ 0.08
MSH6-210ENST00000540021 ESYT1Q9BSJ8 1104 aa15.55■□□□□ 0.08
MSH6-210ENST00000540021 IGSF3O75054 1194 aa15.55■□□□□ 0.08
MSH6-210ENST00000540021 CDK11BP21127 795 aaKnown RBP15.55■□□□□ 0.08
MSH6-210ENST00000540021 G2E3Q7L622 706 aa15.55■□□□□ 0.08
MSH6-210ENST00000540021 CNTROBQ8N137 903 aa15.55■□□□□ 0.08
MSH6-210ENST00000540021 JAKMIP1Q96N16 626 aaKnown RBP15.55■□□□□ 0.08
MSH6-210ENST00000540021 CCDC30Q5VVM6 783 aa15.55■□□□□ 0.08
MSH6-210ENST00000540021 BECN2A8MW95 431 aa15.54■□□□□ 0.08
MSH6-210ENST00000540021 CD109Q6YHK3 1445 aa15.54■□□□□ 0.08
MSH6-210ENST00000540021 FOXO3O43524 673 aa15.54■□□□□ 0.08
MSH6-210ENST00000540021 HSP90AB2PQ58FF8 381 aa15.54■□□□□ 0.08
MSH6-210ENST00000540021 CCDC183Q5T5S1 534 aa15.54■□□□□ 0.08
MSH6-210ENST00000540021 MSH6P52701 1360 aa15.54■□□□□ 0.08
MSH6-210ENST00000540021 IQGAP3Q86VI3 1631 aa15.54■□□□□ 0.08
MSH6-210ENST00000540021 MADDQ8WXG6 1647 aa15.54■□□□□ 0.08
MSH6-210ENST00000540021 CPA1P15085 419 aa15.54■□□□□ 0.08
MSH6-210ENST00000540021 NOLC1Q14978 699 aaKnown RBP eCLIP15.54■□□□□ 0.08
MSH6-210ENST00000540021 HDGFL1Q5TGJ6 251 aa15.54■□□□□ 0.08
MSH6-210ENST00000540021 CKAP2LQ8IYA6 745 aa15.54■□□□□ 0.08
MSH6-210ENST00000540021 RUFY2Q8WXA3 655 aa15.54■□□□□ 0.08
MSH6-210ENST00000540021 PPP4R3BQ5MIZ7 849 aa15.53■□□□□ 0.08
MSH6-210ENST00000540021 TRPM2O94759 1503 aa15.53■□□□□ 0.08
MSH6-210ENST00000540021 MYO5CQ9NQX4 1742 aa15.53■□□□□ 0.08
MSH6-210ENST00000540021 CCDC61Q9Y6R9 512 aa15.53■□□□□ 0.08
MSH6-210ENST00000540021 PALD1Q9ULE6 856 aa15.53■□□□□ 0.08
MSH6-210ENST00000540021 CDC42BPBQ9Y5S2 1711 aa15.53■□□□□ 0.08
MSH6-210ENST00000540021 HDGFP51858 240 aaKnown RBP15.52■□□□□ 0.08
MSH6-210ENST00000540021 FAM184AQ8NB25 1140 aa15.52■□□□□ 0.08
MSH6-210ENST00000540021 LARP1BQ659C4 914 aaKnown RBP15.52■□□□□ 0.08
MSH6-210ENST00000540021 PDCL2Q8N4E4 241 aa15.52■□□□□ 0.08
MSH6-210ENST00000540021 CCDC192P0DO97 292 aa15.52■□□□□ 0.07
MSH6-210ENST00000540021 MCM5P33992 734 aa15.52■□□□□ 0.07
MSH6-210ENST00000540021 HS1BP3Q53T59 392 aa15.52■□□□□ 0.07
MSH6-210ENST00000540021 SBNO2Q9Y2G9 1366 aa15.52■□□□□ 0.07
MSH6-210ENST00000540021 TPD52L1Q16890 204 aaPredicted RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms