RNA–Protein interactions for RNA: ENST00000538838.5

TMEM260-202, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best) BASIC

Gene TMEM260, Length 1,638 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-202ENST00000538838 PNNQ9H307 717 aaKnown RBP31.16■■■□□ 2.58
TMEM260-202ENST00000538838 DLG5Q8TDM6 1919 aa31.15■■■□□ 2.58
TMEM260-202ENST00000538838 THSD7AQ9UPZ6 1657 aa31.15■■■□□ 2.58
TMEM260-202ENST00000538838 MAPK8IP3Q9UPT6 1336 aa31.15■■■□□ 2.58
TMEM260-202ENST00000538838 TATP17735 454 aaPredicted RBP31.15■■■□□ 2.58
TMEM260-202ENST00000538838 RGS17Q9UGC6 210 aaPredicted RBP31.14■■■□□ 2.58
TMEM260-202ENST00000538838 SENP3-EIF4A1A0A087X0R7 540 aa31.13■■■□□ 2.57
TMEM260-202ENST00000538838 FAM98CQ17RN3 349 aaKnown RBP31.13■■■□□ 2.57
TMEM260-202ENST00000538838 BARGINQ6ZT62 677 aa31.13■■■□□ 2.57
TMEM260-202ENST00000538838 NEFMP07197 916 aa31.11■■■□□ 2.57
TMEM260-202ENST00000538838 PLEKHG2Q9H7P9 1386 aa31.1■■■□□ 2.57
TMEM260-202ENST00000538838 TNS2Q63HR2 1409 aa31.07■■■□□ 2.56
TMEM260-202ENST00000538838 APAF1O14727 1248 aa31.07■■■□□ 2.56
TMEM260-202ENST00000538838 MTHFSDQ2M296 383 aaKnown RBP31.07■■■□□ 2.56
TMEM260-202ENST00000538838 VIRMAQ69YN4 1812 aaKnown RBP31.06■■■□□ 2.56
TMEM260-202ENST00000538838 PLEKHO1Q53GL0 409 aaPredicted RBP31.06■■■□□ 2.56
TMEM260-202ENST00000538838 CDCA7Q9BWT1 371 aaPredicted RBP31.06■■■□□ 2.56
TMEM260-202ENST00000538838 RRP7AQ9Y3A4 280 aaKnown RBP31.06■■■□□ 2.56
TMEM260-202ENST00000538838 AMOTQ4VCS5 1084 aa31.05■■■□□ 2.56
TMEM260-202ENST00000538838 POTEAQ6S8J7 498 aa31.04■■■□□ 2.56
TMEM260-202ENST00000538838 A0A0G2JS52 829 aa31.03■■■□□ 2.56
TMEM260-202ENST00000538838 RBM6P78332 1123 aaKnown RBP31.03■■■□□ 2.56
TMEM260-202ENST00000538838 MYT1Q01538 1121 aa31.03■■■□□ 2.56
TMEM260-202ENST00000538838 NFE2L2Q16236 605 aa31.03■■■□□ 2.56
TMEM260-202ENST00000538838 ZCRB1Q8TBF4 217 aaKnown RBP31.03■■■□□ 2.56
TMEM260-202ENST00000538838 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.03■■■□□ 2.562e-7■■■■■ 28.3
TMEM260-202ENST00000538838 SPG7Q9UQ90 795 aa31.03■■■□□ 2.56
TMEM260-202ENST00000538838 TMPOP42166 694 aaKnown RBP31.02■■■□□ 2.56
TMEM260-202ENST00000538838 ZNF530Q6P9A1 599 aaPredicted RBP31.02■■■□□ 2.56
TMEM260-202ENST00000538838 GAS2L2Q8NHY3 880 aa31.02■■■□□ 2.56
TMEM260-202ENST00000538838 NEUROD2Q15784 382 aa31.02■■■□□ 2.56
TMEM260-202ENST00000538838 BRWD3Q6RI45 1802 aa31.01■■■□□ 2.56
TMEM260-202ENST00000538838 PCDH11XQ9BZA7 1347 aa30.99■■■□□ 2.55
TMEM260-202ENST00000538838 PCDH11YQ9BZA8 1340 aa30.99■■■□□ 2.55
TMEM260-202ENST00000538838 HNRNPUQ00839 825 aaKnown RBP eCLIP30.99■■■□□ 2.55
TMEM260-202ENST00000538838 DDB1Q16531 1140 aa30.99■■■□□ 2.55
TMEM260-202ENST00000538838 ONECUT3O60422 494 aaPredicted RBP30.98■■■□□ 2.55
TMEM260-202ENST00000538838 EXOC5O00471 708 aa30.98■■■□□ 2.55
TMEM260-202ENST00000538838 YTHDC1Q96MU7 727 aaKnown RBP30.98■■■□□ 2.55
TMEM260-202ENST00000538838 SALL2Q9Y467 1007 aaPredicted RBP30.98■■■□□ 2.55
TMEM260-202ENST00000538838 MAP3K5Q99683 1374 aa30.97■■■□□ 2.55
TMEM260-202ENST00000538838 CYP27B1O15528 508 aa30.97■■■□□ 2.55
TMEM260-202ENST00000538838 RXRBP28702 533 aa30.97■■■□□ 2.55
TMEM260-202ENST00000538838 RIPK4P57078 832 aa30.97■■■□□ 2.55
TMEM260-202ENST00000538838 SEPT12Q8IYM1 358 aa30.96■■■□□ 2.55
TMEM260-202ENST00000538838 SCN11AQ9UI33 1791 aa30.96■■■□□ 2.55
TMEM260-202ENST00000538838 C1orf141Q5JVX7 400 aa30.95■■■□□ 2.55
TMEM260-202ENST00000538838 DDX54Q8TDD1 881 aaKnown RBP30.95■■■□□ 2.55
TMEM260-202ENST00000538838 ADAMTS7Q9UKP4 1686 aa30.95■■■□□ 2.55
TMEM260-202ENST00000538838 PHKG2P15735 406 aa30.95■■■□□ 2.54
TMEM260-202ENST00000538838 RGS12O14924 1447 aa30.94■■■□□ 2.54
TMEM260-202ENST00000538838 AKAP4Q5JQC9 854 aa30.94■■■□□ 2.54
TMEM260-202ENST00000538838 TOGARAM1Q9Y4F4 1720 aa30.93■■■□□ 2.54
TMEM260-202ENST00000538838 IFNL2Q8IZJ0 200 aa30.93■■■□□ 2.54
TMEM260-202ENST00000538838 GNAT3A8MTJ3 354 aa30.92■■■□□ 2.54
TMEM260-202ENST00000538838 TRIM35Q9UPQ4 493 aa30.91■■■□□ 2.54
TMEM260-202ENST00000538838 DOT1LQ8TEK3 1739 aa30.9■■■□□ 2.54
TMEM260-202ENST00000538838 KDM6AO15550 1401 aaPredicted RBP30.9■■■□□ 2.54
TMEM260-202ENST00000538838 DCTN1Q14203 1278 aa30.88■■■□□ 2.53
TMEM260-202ENST00000538838 MARCH10Q8NA82 808 aaPredicted RBP30.88■■■□□ 2.53
TMEM260-202ENST00000538838 LMOD3Q0VAK6 560 aa30.87■■■□□ 2.53
TMEM260-202ENST00000538838 PDE3BQ13370 1112 aa30.87■■■□□ 2.53
TMEM260-202ENST00000538838 MPRIPQ6WCQ1 1025 aa30.87■■■□□ 2.53
TMEM260-202ENST00000538838 MCM10Q7L590 875 aa30.87■■■□□ 2.53
TMEM260-202ENST00000538838 RTF1Q92541 710 aaKnown RBP30.87■■■□□ 2.53
TMEM260-202ENST00000538838 THUMPD2Q9BTF0 503 aaKnown RBP30.87■■■□□ 2.53
TMEM260-202ENST00000538838 CCDC27Q2M243 656 aa30.86■■■□□ 2.53
TMEM260-202ENST00000538838 SIPA1L3O60292 1781 aaPredicted RBP30.85■■■□□ 2.53
TMEM260-202ENST00000538838 NCBP3Q53F19 620 aaKnown RBP30.85■■■□□ 2.53
TMEM260-202ENST00000538838 NGEFQ8N5V2 710 aa30.85■■■□□ 2.53
TMEM260-202ENST00000538838 HTATSF1O43719 755 aaKnown RBP30.84■■■□□ 2.53
TMEM260-202ENST00000538838 WWC1Q8IX03 1113 aa30.84■■■□□ 2.53
TMEM260-202ENST00000538838 LGR6Q9HBX8 967 aa30.84■■■□□ 2.53
TMEM260-202ENST00000538838 ITGB4P16144 1822 aa30.84■■■□□ 2.53
TMEM260-202ENST00000538838 HSP90AB1P08238 724 aaKnown RBP30.84■■■□□ 2.53
TMEM260-202ENST00000538838 NKX1-1Q15270 411 aaPredicted RBP30.84■■■□□ 2.53
TMEM260-202ENST00000538838 IL17REQ8NFR9 667 aa30.84■■■□□ 2.53
TMEM260-202ENST00000538838 CEMIPQ8WUJ3 1361 aa30.83■■■□□ 2.53
TMEM260-202ENST00000538838 RNMTO43148 476 aaKnown RBP30.82■■■□□ 2.52
TMEM260-202ENST00000538838 DCAF5Q96JK2 942 aa30.82■■■□□ 2.52
TMEM260-202ENST00000538838 ZBED9Q6R2W3 1325 aa30.82■■■□□ 2.52
TMEM260-202ENST00000538838 ZNF521Q96K83 1311 aa30.82■■■□□ 2.52
TMEM260-202ENST00000538838 MRC1P22897 1456 aa30.81■■■□□ 2.52
TMEM260-202ENST00000538838 FAM182BQ5T319 152 aa30.8■■■□□ 2.52
TMEM260-202ENST00000538838 SBF2Q86WG5 1849 aa30.8■■■□□ 2.52
TMEM260-202ENST00000538838 KRT27Q7Z3Y8 459 aa30.79■■■□□ 2.52
TMEM260-202ENST00000538838 KAT6BQ8WYB5 2073 aa30.79■■■□□ 2.52
TMEM260-202ENST00000538838 NHSQ6T4R5 1651 aa30.75■■■□□ 2.51
TMEM260-202ENST00000538838 TEFQ10587 303 aa30.73■■■□□ 2.51
TMEM260-202ENST00000538838 WDR63Q8IWG1 891 aa30.73■■■□□ 2.51
TMEM260-202ENST00000538838 KDM3BQ7LBC6 1761 aa30.72■■■□□ 2.51
TMEM260-202ENST00000538838 BCL9O00512 1426 aa30.72■■■□□ 2.51
TMEM260-202ENST00000538838 ACSBG1Q96GR2 724 aa30.72■■■□□ 2.51
TMEM260-202ENST00000538838 SLC52A2Q9HAB3 445 aa30.72■■■□□ 2.51
TMEM260-202ENST00000538838 EP400Q96L91 3159 aa30.71■■■□□ 2.51
TMEM260-202ENST00000538838 ERVV-2B6SEH9 535 aa30.7■■■□□ 2.51
TMEM260-202ENST00000538838 CALD1Q05682 793 aaKnown RBP30.7■■■□□ 2.51
TMEM260-202ENST00000538838 PAPPAQ13219 1627 aa30.7■■■□□ 2.51
TMEM260-202ENST00000538838 CABP4P57796 275 aa30.69■■■□□ 2.5
TMEM260-202ENST00000538838 GOLGA2Q08379 1002 aa30.69■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms