RNA–Protein interactions for RNA: ENST00000538696.5

CLN6-202, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2 BASIC

Gene CLN6, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-202ENST00000538696 IL2RBP14784 551 aa22.87■■□□□ 1.25
CLN6-202ENST00000538696 FAM98CQ17RN3 349 aaKnown RBP22.87■■□□□ 1.25
CLN6-202ENST00000538696 PRKAR2BP31323 418 aa22.86■■□□□ 1.25
CLN6-202ENST00000538696 RBM6P78332 1123 aaKnown RBP22.86■■□□□ 1.25
CLN6-202ENST00000538696 RAPGEF4Q8WZA2 1011 aa22.86■■□□□ 1.25
CLN6-202ENST00000538696 FCHSD2O94868 740 aa22.85■■□□□ 1.25
CLN6-202ENST00000538696 TATP17735 454 aaPredicted RBP22.85■■□□□ 1.25
CLN6-202ENST00000538696 PLEKHG2Q9H7P9 1386 aa22.85■■□□□ 1.25
CLN6-202ENST00000538696 TNS2Q63HR2 1409 aa22.85■■□□□ 1.25
CLN6-202ENST00000538696 DLG5Q8TDM6 1919 aa22.84■■□□□ 1.25
CLN6-202ENST00000538696 PLEKHF1Q96S99 279 aa22.83■■□□□ 1.25
CLN6-202ENST00000538696 CDCA7Q9BWT1 371 aaPredicted RBP22.83■■□□□ 1.25
CLN6-202ENST00000538696 VIRMAQ69YN4 1812 aaKnown RBP22.83■■□□□ 1.25
CLN6-202ENST00000538696 ONECUT3O60422 494 aaPredicted RBP22.82■■□□□ 1.24
CLN6-202ENST00000538696 RXRBP28702 533 aa22.82■■□□□ 1.24
CLN6-202ENST00000538696 RGS12O14924 1447 aa22.82■■□□□ 1.24
CLN6-202ENST00000538696 CCDC146Q8IYE0 955 aa22.82■■□□□ 1.24
CLN6-202ENST00000538696 PHACTR3Q96KR7 559 aa22.8■■□□□ 1.24
CLN6-202ENST00000538696 SEPT12Q8IYM1 358 aa22.79■■□□□ 1.24
CLN6-202ENST00000538696 PNNQ9H307 717 aaKnown RBP22.79■■□□□ 1.24
CLN6-202ENST00000538696 A0A0G2JS52 829 aa22.78■■□□□ 1.24
CLN6-202ENST00000538696 MYT1Q01538 1121 aa22.78■■□□□ 1.24
CLN6-202ENST00000538696 RUNDC1Q96C34 613 aa22.78■■□□□ 1.24
CLN6-202ENST00000538696 ZBED9Q6R2W3 1325 aa22.77■■□□□ 1.24
CLN6-202ENST00000538696 MAPK8IP3Q9UPT6 1336 aa22.77■■□□□ 1.24
CLN6-202ENST00000538696 DDB1Q16531 1140 aa22.77■■□□□ 1.24
CLN6-202ENST00000538696 MTHFSDQ2M296 383 aaKnown RBP22.77■■□□□ 1.24
CLN6-202ENST00000538696 PLEKHO1Q53GL0 409 aaPredicted RBP22.77■■□□□ 1.24
CLN6-202ENST00000538696 ZCRB1Q8TBF4 217 aaKnown RBP22.77■■□□□ 1.24
CLN6-202ENST00000538696 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.77■■□□□ 1.24
CLN6-202ENST00000538696 AMOTQ4VCS5 1084 aa22.76■■□□□ 1.23
CLN6-202ENST00000538696 SENP3-EIF4A1A0A087X0R7 540 aa22.75■■□□□ 1.23
CLN6-202ENST00000538696 EXOC5O00471 708 aa22.75■■□□□ 1.23
CLN6-202ENST00000538696 SPG7Q9UQ90 795 aa22.75■■□□□ 1.23
CLN6-202ENST00000538696 TOGARAM1Q9Y4F4 1720 aa22.75■■□□□ 1.23
CLN6-202ENST00000538696 ADAMTS7Q9UKP4 1686 aa22.74■■□□□ 1.23
CLN6-202ENST00000538696 PCDH11XQ9BZA7 1347 aa22.74■■□□□ 1.23
CLN6-202ENST00000538696 PCDH11YQ9BZA8 1340 aa22.74■■□□□ 1.23
CLN6-202ENST00000538696 SCN11AQ9UI33 1791 aa22.74■■□□□ 1.23
CLN6-202ENST00000538696 NEFMP07197 916 aa22.74■■□□□ 1.23
CLN6-202ENST00000538696 ZNF530Q6P9A1 599 aaPredicted RBP22.74■■□□□ 1.23
CLN6-202ENST00000538696 DOT1LQ8TEK3 1739 aa22.73■■□□□ 1.23
CLN6-202ENST00000538696 CYP27B1O15528 508 aa22.73■■□□□ 1.23
CLN6-202ENST00000538696 GAS2L2Q8NHY3 880 aa22.73■■□□□ 1.23
CLN6-202ENST00000538696 NFE2L2Q16236 605 aa22.71■■□□□ 1.23
CLN6-202ENST00000538696 APAF1O14727 1248 aa22.7■■□□□ 1.22
CLN6-202ENST00000538696 PHKG2P15735 406 aa22.7■■□□□ 1.22
CLN6-202ENST00000538696 MARCH10Q8NA82 808 aaPredicted RBP22.7■■□□□ 1.22
CLN6-202ENST00000538696 DDX54Q8TDD1 881 aaKnown RBP22.7■■□□□ 1.22
CLN6-202ENST00000538696 MAP3K5Q99683 1374 aa22.7■■□□□ 1.22
CLN6-202ENST00000538696 SBF2Q86WG5 1849 aa22.7■■□□□ 1.22
CLN6-202ENST00000538696 ITGB4P16144 1822 aa22.68■■□□□ 1.22
CLN6-202ENST00000538696 TMPOP42166 694 aaKnown RBP22.68■■□□□ 1.22
CLN6-202ENST00000538696 PDE3BQ13370 1112 aa22.68■■□□□ 1.22
CLN6-202ENST00000538696 AKAP4Q5JQC9 854 aa22.68■■□□□ 1.22
CLN6-202ENST00000538696 IFNL2Q8IZJ0 200 aa22.68■■□□□ 1.22
CLN6-202ENST00000538696 RRP7AQ9Y3A4 280 aaKnown RBP22.68■■□□□ 1.22
CLN6-202ENST00000538696 KDM6AO15550 1401 aaPredicted RBP22.68■■□□□ 1.22
CLN6-202ENST00000538696 C1orf141Q5JVX7 400 aa22.67■■□□□ 1.22
CLN6-202ENST00000538696 KRT27Q7Z3Y8 459 aa22.66■■□□□ 1.22
CLN6-202ENST00000538696 SIPA1L3O60292 1781 aaPredicted RBP22.66■■□□□ 1.22
CLN6-202ENST00000538696 NHSQ6T4R5 1651 aa22.65■■□□□ 1.22
CLN6-202ENST00000538696 GNAT3A8MTJ3 354 aa22.64■■□□□ 1.22
CLN6-202ENST00000538696 RIPK4P57078 832 aa22.64■■□□□ 1.22
CLN6-202ENST00000538696 NKX1-1Q15270 411 aaPredicted RBP22.64■■□□□ 1.22
CLN6-202ENST00000538696 KAT6BQ8WYB5 2073 aa22.64■■□□□ 1.21
CLN6-202ENST00000538696 BCL9O00512 1426 aa22.64■■□□□ 1.21
CLN6-202ENST00000538696 MRC1P22897 1456 aa22.63■■□□□ 1.21
CLN6-202ENST00000538696 NEUROD2Q15784 382 aa22.63■■□□□ 1.21
CLN6-202ENST00000538696 FAM182BQ5T319 152 aa22.63■■□□□ 1.21
CLN6-202ENST00000538696 MPRIPQ6WCQ1 1025 aa22.62■■□□□ 1.21
CLN6-202ENST00000538696 SALL2Q9Y467 1007 aaPredicted RBP22.62■■□□□ 1.21
CLN6-202ENST00000538696 HSP90AB1P08238 724 aaKnown RBP22.61■■□□□ 1.21
CLN6-202ENST00000538696 TRIM35Q9UPQ4 493 aa22.61■■□□□ 1.21
CLN6-202ENST00000538696 CEMIPQ8WUJ3 1361 aa22.6■■□□□ 1.21
CLN6-202ENST00000538696 RNMTO43148 476 aaKnown RBP22.59■■□□□ 1.21
CLN6-202ENST00000538696 HTATSF1O43719 755 aaKnown RBP22.59■■□□□ 1.21
CLN6-202ENST00000538696 DCTN1Q14203 1278 aa22.59■■□□□ 1.21
CLN6-202ENST00000538696 DCAF5Q96JK2 942 aa22.59■■□□□ 1.21
CLN6-202ENST00000538696 LGR6Q9HBX8 967 aa22.59■■□□□ 1.21
CLN6-202ENST00000538696 LMOD3Q0VAK6 560 aa22.58■■□□□ 1.21
CLN6-202ENST00000538696 MCM10Q7L590 875 aa22.58■■□□□ 1.21
CLN6-202ENST00000538696 IL17REQ8NFR9 667 aa22.58■■□□□ 1.21
CLN6-202ENST00000538696 BTAF1O14981 1849 aa22.57■■□□□ 1.2
CLN6-202ENST00000538696 NCBP3Q53F19 620 aaKnown RBP22.57■■□□□ 1.2
CLN6-202ENST00000538696 RTF1Q92541 710 aaKnown RBP22.57■■□□□ 1.2
CLN6-202ENST00000538696 PAPPAQ13219 1627 aa22.57■■□□□ 1.2
CLN6-202ENST00000538696 CCDC27Q2M243 656 aa22.57■■□□□ 1.2
CLN6-202ENST00000538696 THUMPD2Q9BTF0 503 aaKnown RBP22.57■■□□□ 1.2
CLN6-202ENST00000538696 TNS1Q9HBL0 1735 aaKnown RBP22.56■■□□□ 1.2
CLN6-202ENST00000538696 KDM3BQ7LBC6 1761 aa22.55■■□□□ 1.2
CLN6-202ENST00000538696 FAM196AQ6ZSG2 479 aa22.55■■□□□ 1.2
CLN6-202ENST00000538696 ACSBG1Q96GR2 724 aa22.55■■□□□ 1.2
CLN6-202ENST00000538696 NGEFQ8N5V2 710 aa22.54■■□□□ 1.2
CLN6-202ENST00000538696 ERVV-2B6SEH9 535 aa22.53■■□□□ 1.2
CLN6-202ENST00000538696 WWC1Q8IX03 1113 aa22.53■■□□□ 1.2
CLN6-202ENST00000538696 ZNF521Q96K83 1311 aa22.52■■□□□ 1.2
CLN6-202ENST00000538696 SLC52A2Q9HAB3 445 aa22.52■■□□□ 1.2
CLN6-202ENST00000538696 KCNQ2O43526 872 aa22.51■■□□□ 1.19
CLN6-202ENST00000538696 PRIM1P49642 420 aaKnown RBP22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 162.6 ms