RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 SEPT12Q8IYM1 358 aa12.38□□□□□ -0.43
CIITA-203ENST00000537380 MAPK8IP3Q9UPT6 1336 aa12.37□□□□□ -0.43
CIITA-203ENST00000537380 EVA1CP58658 441 aa12.37□□□□□ -0.43
CIITA-203ENST00000537380 FAM98CQ17RN3 349 aaKnown RBP12.37□□□□□ -0.43
CIITA-203ENST00000537380 BARGINQ6ZT62 677 aa12.37□□□□□ -0.43
CIITA-203ENST00000537380 THRAP3Q9Y2W1 955 aaKnown RBP12.37□□□□□ -0.43
CIITA-203ENST00000537380 ERBB3P21860 1342 aa12.37□□□□□ -0.43
CIITA-203ENST00000537380 ZBTB7CA1YPR0 619 aa12.36□□□□□ -0.43
CIITA-203ENST00000537380 TMPOP42166 694 aaKnown RBP12.36□□□□□ -0.43
CIITA-203ENST00000537380 GOLGA2Q08379 1002 aa12.36□□□□□ -0.43
CIITA-203ENST00000537380 CCDC146Q8IYE0 955 aa12.36□□□□□ -0.43
CIITA-203ENST00000537380 TRMT2AQ8IZ69 625 aaKnown RBP12.36□□□□□ -0.43
CIITA-203ENST00000537380 LRRC37A3O60309 1634 aa12.36□□□□□ -0.43
CIITA-203ENST00000537380 IL16Q14005 1332 aa12.36□□□□□ -0.43
CIITA-203ENST00000537380 PRKAR2BP31323 418 aa12.35□□□□□ -0.43
CIITA-203ENST00000537380 KRT27Q7Z3Y8 459 aa12.35□□□□□ -0.43
CIITA-203ENST00000537380 WWC1Q8IX03 1113 aa12.35□□□□□ -0.43
CIITA-203ENST00000537380 EYA1Q99502 592 aa12.35□□□□□ -0.43
CIITA-203ENST00000537380 DISP2A7MBM2 1401 aa12.35□□□□□ -0.43
CIITA-203ENST00000537380 E9PSI1 815 aa12.34□□□□□ -0.43
CIITA-203ENST00000537380 LMOD3Q0VAK6 560 aa12.34□□□□□ -0.43
CIITA-203ENST00000537380 NFE2L2Q16236 605 aa12.34□□□□□ -0.43
CIITA-203ENST00000537380 SULT6B1Q6IMI4 303 aa12.34□□□□□ -0.43
CIITA-203ENST00000537380 CARD10Q9BWT7 1032 aa12.34□□□□□ -0.43
CIITA-203ENST00000537380 CALD1Q05682 793 aaKnown RBP12.33□□□□□ -0.44
CIITA-203ENST00000537380 HTATSF1O43719 755 aaKnown RBP12.32□□□□□ -0.44
CIITA-203ENST00000537380 SLFN5Q08AF3 891 aa12.32□□□□□ -0.44
CIITA-203ENST00000537380 TOM1L2Q6ZVM7 507 aa12.32□□□□□ -0.44
CIITA-203ENST00000537380 USP35Q9P2H5 1018 aa12.32□□□□□ -0.44
CIITA-203ENST00000537380 RGPD2P0DJD1 1756 aa12.32□□□□□ -0.44
CIITA-203ENST00000537380 HMOX1P09601 288 aa12.31□□□□□ -0.44
CIITA-203ENST00000537380 BAG6P46379 1132 aa12.31□□□□□ -0.44
CIITA-203ENST00000537380 ANKRD24Q8TF21 1146 aa12.31□□□□□ -0.44
CIITA-203ENST00000537380 TRIM35Q9UPQ4 493 aa12.31□□□□□ -0.44
CIITA-203ENST00000537380 RIPK4P57078 832 aa12.3□□□□□ -0.44
CIITA-203ENST00000537380 DUSP27Q5VZP5 1158 aa12.3□□□□□ -0.44
CIITA-203ENST00000537380 GAS2L2Q8NHY3 880 aa12.3□□□□□ -0.44
CIITA-203ENST00000537380 PHACTR3Q96KR7 559 aa12.3□□□□□ -0.44
CIITA-203ENST00000537380 TNS1Q9HBL0 1735 aaKnown RBP12.3□□□□□ -0.44
CIITA-203ENST00000537380 CT47B1P0C2W7 299 aaPredicted RBP12.29□□□□□ -0.44
CIITA-203ENST00000537380 CSB-PGBD3P0DP91 1061 aa12.29□□□□□ -0.44
CIITA-203ENST00000537380 NBPF6Q5VWK0 638 aa12.29□□□□□ -0.44
CIITA-203ENST00000537380 AEBP1Q8IUX7 1158 aa12.29□□□□□ -0.44
CIITA-203ENST00000537380 NBPF4Q96M43 638 aa12.29□□□□□ -0.44
CIITA-203ENST00000537380 CDCA7Q9BWT1 371 aaPredicted RBP12.29□□□□□ -0.44
CIITA-203ENST00000537380 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.29□□□□□ -0.44
CIITA-203ENST00000537380 TNS2Q63HR2 1409 aa12.28□□□□□ -0.44
CIITA-203ENST00000537380 AMOTQ4VCS5 1084 aa12.28□□□□□ -0.44
CIITA-203ENST00000537380 MYH16Q9H6N6 1097 aa12.28□□□□□ -0.44
CIITA-203ENST00000537380 RNF123Q5XPI4 1314 aa12.28□□□□□ -0.44
CIITA-203ENST00000537380 SBF2Q86WG5 1849 aa12.27□□□□□ -0.44
CIITA-203ENST00000537380 SALL2Q9Y467 1007 aaPredicted RBP12.27□□□□□ -0.45
CIITA-203ENST00000537380 BCL9O00512 1426 aa12.27□□□□□ -0.45
CIITA-203ENST00000537380 SHANK3Q9BYB0 1731 aa12.26□□□□□ -0.45
CIITA-203ENST00000537380 CDCA7LQ96GN5 454 aa12.26□□□□□ -0.45
CIITA-203ENST00000537380 BABAM1Q9NWV8 329 aa12.26□□□□□ -0.45
CIITA-203ENST00000537380 NLRP2Q9NX02 1062 aa12.26□□□□□ -0.45
CIITA-203ENST00000537380 RRP7AQ9Y3A4 280 aaKnown RBP12.26□□□□□ -0.45
CIITA-203ENST00000537380 DLG5Q8TDM6 1919 aa12.26□□□□□ -0.45
CIITA-203ENST00000537380 OVOS2A0A0G2JMS6 1433 aa12.26□□□□□ -0.45
CIITA-203ENST00000537380 ZNF853P0CG23 659 aa12.25□□□□□ -0.45
CIITA-203ENST00000537380 NEUROD2Q15784 382 aa12.25□□□□□ -0.45
CIITA-203ENST00000537380 DDB1Q16531 1140 aa12.25□□□□□ -0.45
CIITA-203ENST00000537380 PLEKHO1Q53GL0 409 aaPredicted RBP12.25□□□□□ -0.45
CIITA-203ENST00000537380 DEFB132Q7Z7B7 95 aa12.25□□□□□ -0.45
CIITA-203ENST00000537380 LTV1Q96GA3 475 aaPredicted RBP12.25□□□□□ -0.45
CIITA-203ENST00000537380 IFT57Q9NWB7 429 aa12.25□□□□□ -0.45
CIITA-203ENST00000537380 GNAI1P63096 354 aa12.24□□□□□ -0.45
CIITA-203ENST00000537380 FAM182BQ5T319 152 aa12.24□□□□□ -0.45
CIITA-203ENST00000537380 ERICH6BQ5W0A0 696 aa12.24□□□□□ -0.45
CIITA-203ENST00000537380 FAM196AQ6ZSG2 479 aa12.24□□□□□ -0.45
CIITA-203ENST00000537380 ZNF428Q96B54 188 aa12.24□□□□□ -0.45
CIITA-203ENST00000537380 MEGF6O75095 1541 aa12.23□□□□□ -0.45
CIITA-203ENST00000537380 GNAT3A8MTJ3 354 aa12.23□□□□□ -0.45
CIITA-203ENST00000537380 IL2RBP14784 551 aa12.23□□□□□ -0.45
CIITA-203ENST00000537380 MTHFSDQ2M296 383 aaKnown RBP12.23□□□□□ -0.45
CIITA-203ENST00000537380 CFAP44Q96MT7 982 aa12.23□□□□□ -0.45
CIITA-203ENST00000537380 SPINK5Q9NQ38 1064 aaPredicted RBP12.23□□□□□ -0.45
CIITA-203ENST00000537380 RCAN3Q9UKA8 241 aa12.23□□□□□ -0.45
CIITA-203ENST00000537380 RGPD3A6NKT7 1758 aaPredicted RBP12.23□□□□□ -0.45
CIITA-203ENST00000537380 RGPD4Q7Z3J3 1758 aa12.23□□□□□ -0.45
CIITA-203ENST00000537380 PKD1L3Q7Z443 1732 aa12.23□□□□□ -0.45
CIITA-203ENST00000537380 MAP3K5Q99683 1374 aa12.22□□□□□ -0.45
CIITA-203ENST00000537380 AKAP4Q5JQC9 854 aa12.22□□□□□ -0.45
CIITA-203ENST00000537380 RAPGEF4Q8WZA2 1011 aa12.22□□□□□ -0.45
CIITA-203ENST00000537380 NHSQ6T4R5 1651 aa12.22□□□□□ -0.45
CIITA-203ENST00000537380 CEMIPQ8WUJ3 1361 aa12.21□□□□□ -0.45
CIITA-203ENST00000537380 TATP17735 454 aaPredicted RBP12.21□□□□□ -0.45
CIITA-203ENST00000537380 MARCH10Q8NA82 808 aaPredicted RBP12.21□□□□□ -0.45
CIITA-203ENST00000537380 RTF1Q92541 710 aaKnown RBP12.21□□□□□ -0.45
CIITA-203ENST00000537380 RREB1Q92766 1687 aa12.2□□□□□ -0.46
CIITA-203ENST00000537380 ADAMTS7Q9UKP4 1686 aa12.2□□□□□ -0.46
CIITA-203ENST00000537380 SOS1Q07889 1333 aaPredicted RBP12.2□□□□□ -0.46
CIITA-203ENST00000537380 EXOC5O00471 708 aa12.2□□□□□ -0.46
CIITA-203ENST00000537380 CHL1O00533 1208 aa12.2□□□□□ -0.46
CIITA-203ENST00000537380 SPG7Q9UQ90 795 aa12.2□□□□□ -0.46
CIITA-203ENST00000537380 FANCIQ9NVI1 1328 aa12.19□□□□□ -0.46
CIITA-203ENST00000537380 USHBP1Q8N6Y0 703 aa12.19□□□□□ -0.46
CIITA-203ENST00000537380 SUPT16HQ9Y5B9 1047 aaKnown RBP12.19□□□□□ -0.46
CIITA-203ENST00000537380 SENP3-EIF4A1A0A087X0R7 540 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms