RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 KIAA0556O60303 1618 aa9.3□□□□□ -0.92
USP28-202ENST00000535607 SLC19A1P41440 591 aa9.29□□□□□ -0.92
USP28-202ENST00000535607 PDE4CQ08493 712 aa9.29□□□□□ -0.92
USP28-202ENST00000535607 ARID5BQ14865 1188 aa9.29□□□□□ -0.92
USP28-202ENST00000535607 ARHGAP35Q9NRY4 1499 aa9.28□□□□□ -0.92
USP28-202ENST00000535607 PLA2G2CQ5R387 149 aa9.28□□□□□ -0.92
USP28-202ENST00000535607 VASH1Q7L8A9 365 aaPredicted RBP9.28□□□□□ -0.92
USP28-202ENST00000535607 CCDC125Q86Z20 511 aa9.28□□□□□ -0.92
USP28-202ENST00000535607 PBXIP1Q96AQ6 731 aa9.28□□□□□ -0.92
USP28-202ENST00000535607 SUPT16HQ9Y5B9 1047 aaKnown RBP9.28□□□□□ -0.92
USP28-202ENST00000535607 OCSTAMPQ9BR26 566 aa9.27□□□□□ -0.93
USP28-202ENST00000535607 BCL11AQ9H165 835 aa9.27□□□□□ -0.93
USP28-202ENST00000535607 CARMIL2Q6F5E8 1435 aa9.27□□□□□ -0.93
USP28-202ENST00000535607 LZTS3O60299 673 aaPredicted RBP9.26□□□□□ -0.93
USP28-202ENST00000535607 MAP7D1Q3KQU3 841 aa9.26□□□□□ -0.93
USP28-202ENST00000535607 TBC1D9Q6ZT07 1266 aa9.26□□□□□ -0.93
USP28-202ENST00000535607 UCN2Q96RP3 112 aa9.26□□□□□ -0.93
USP28-202ENST00000535607 DOLKQ9UPQ8 538 aa9.26□□□□□ -0.93
USP28-202ENST00000535607 MAFBQ9Y5Q3 323 aaPredicted RBP9.26□□□□□ -0.93
USP28-202ENST00000535607 ARAP1Q96P48 1450 aa9.26□□□□□ -0.93
USP28-202ENST00000535607 DISP1Q96F81 1524 aa9.26□□□□□ -0.93
USP28-202ENST00000535607 FMN1Q68DA7 1419 aa9.25□□□□□ -0.93
USP28-202ENST00000535607 USP17L5A8MUK1 530 aa9.25□□□□□ -0.93
USP28-202ENST00000535607 RAB15P59190 212 aa9.25□□□□□ -0.93
USP28-202ENST00000535607 EML3Q32P44 896 aa9.25□□□□□ -0.93
USP28-202ENST00000535607 RC3H1Q5TC82 1133 aaKnown RBP9.25□□□□□ -0.93
USP28-202ENST00000535607 TRMT44Q8IYL2 757 aaKnown RBP9.25□□□□□ -0.93
USP28-202ENST00000535607 SEPT12Q8IYM1 358 aa9.25□□□□□ -0.93
USP28-202ENST00000535607 PLPP7Q8NBV4 271 aa9.25□□□□□ -0.93
USP28-202ENST00000535607 SIRT1Q96EB6 747 aa9.25□□□□□ -0.93
USP28-202ENST00000535607 VRTNQ9H8Y1 702 aa9.25□□□□□ -0.93
USP28-202ENST00000535607 VPS8Q8N3P4 1428 aa9.24□□□□□ -0.93
USP28-202ENST00000535607 A0A0G2JS52 829 aa9.24□□□□□ -0.93
USP28-202ENST00000535607 USP17L3A6NCW0 530 aa9.24□□□□□ -0.93
USP28-202ENST00000535607 USP17L4A6NCW7 530 aa9.24□□□□□ -0.93
USP28-202ENST00000535607 CSB-PGBD3P0DP91 1061 aa9.24□□□□□ -0.93
USP28-202ENST00000535607 PDIA4P13667 645 aaKnown RBP9.24□□□□□ -0.93
USP28-202ENST00000535607 C4orf48Q5BLP8 95 aa9.24□□□□□ -0.93
USP28-202ENST00000535607 CFAP70Q5T0N1 1121 aa9.24□□□□□ -0.93
USP28-202ENST00000535607 USP17L2Q6R6M4 530 aa9.24□□□□□ -0.93
USP28-202ENST00000535607 USP17L1Q7RTZ2 530 aa9.24□□□□□ -0.93
USP28-202ENST00000535607 C1QTNF2Q9BXJ5 285 aa9.24□□□□□ -0.93
USP28-202ENST00000535607 RBM19Q9Y4C8 960 aaKnown RBP9.24□□□□□ -0.93
USP28-202ENST00000535607 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.23□□□□□ -0.93
USP28-202ENST00000535607 PIK3CDO00329 1044 aa9.23□□□□□ -0.93
USP28-202ENST00000535607 SKOR1P84550 965 aa9.23□□□□□ -0.93
USP28-202ENST00000535607 LIAT1Q6ZQX7 453 aa9.23□□□□□ -0.93
USP28-202ENST00000535607 KCTD15Q96SI1 283 aaPredicted RBP9.23□□□□□ -0.93
USP28-202ENST00000535607 FYCO1Q9BQS8 1478 aa9.22□□□□□ -0.93
USP28-202ENST00000535607 GIGYF1O75420 1035 aaPredicted RBP9.22□□□□□ -0.93
USP28-202ENST00000535607 MYCP01106 439 aaPredicted RBP9.22□□□□□ -0.93
USP28-202ENST00000535607 NEFLP07196 543 aa9.22□□□□□ -0.93
USP28-202ENST00000535607 OXLD1Q5BKU9 147 aa9.22□□□□□ -0.93
USP28-202ENST00000535607 LARP1Q6PKG0 1096 aaKnown RBP9.22□□□□□ -0.93
USP28-202ENST00000535607 NOD1Q9Y239 953 aa9.22□□□□□ -0.93
USP28-202ENST00000535607 MAP4K5Q9Y4K4 846 aa9.22□□□□□ -0.93
USP28-202ENST00000535607 ATP5J2-PTCD1G3V325 749 aa9.21□□□□□ -0.94
USP28-202ENST00000535607 DHX9Q08211 1270 aaKnown RBP9.21□□□□□ -0.94
USP28-202ENST00000535607 ZNF697Q5TEC3 545 aa9.21□□□□□ -0.94
USP28-202ENST00000535607 TRIM50Q86XT4 487 aa9.21□□□□□ -0.94
USP28-202ENST00000535607 PLEKHM2Q8IWE5 1019 aa9.21□□□□□ -0.94
USP28-202ENST00000535607 DEPDC4Q8N2C3 294 aa9.21□□□□□ -0.94
USP28-202ENST00000535607 PCDHB11Q9Y5F2 797 aa9.21□□□□□ -0.94
USP28-202ENST00000535607 FHOD3Q2V2M9 1422 aa9.21□□□□□ -0.94
USP28-202ENST00000535607 PRG4Q92954 1404 aaPredicted RBP9.21□□□□□ -0.94
USP28-202ENST00000535607 HECW1Q76N89 1606 aa9.2□□□□□ -0.94
USP28-202ENST00000535607 WNT7AO00755 349 aa9.2□□□□□ -0.94
USP28-202ENST00000535607 ATP1A2P50993 1020 aa9.2□□□□□ -0.94
USP28-202ENST00000535607 FOXC1Q12948 553 aa9.2□□□□□ -0.94
USP28-202ENST00000535607 NCOA4Q13772 614 aa9.2□□□□□ -0.94
USP28-202ENST00000535607 CDCA8Q53HL2 280 aa9.2□□□□□ -0.94
USP28-202ENST00000535607 SPRYD7Q5W111 196 aa9.2□□□□□ -0.94
USP28-202ENST00000535607 PRKD2Q9BZL6 878 aa9.2□□□□□ -0.94
USP28-202ENST00000535607 PCF11O94913 1555 aaKnown RBP9.2□□□□□ -0.94
USP28-202ENST00000535607 FSHRP23945 695 aa9.19□□□□□ -0.94
USP28-202ENST00000535607 USP4Q13107 963 aa9.19□□□□□ -0.94
USP28-202ENST00000535607 ZNF598Q86UK7 904 aaKnown RBP9.19□□□□□ -0.94
USP28-202ENST00000535607 MKRN1Q9UHC7 482 aaKnown RBP9.19□□□□□ -0.94
USP28-202ENST00000535607 WASF2Q9Y6W5 498 aa9.19□□□□□ -0.94
USP28-202ENST00000535607 V9GY48 417 aaPredicted RBP9.19□□□□□ -0.94
USP28-202ENST00000535607 CASKIN1Q8WXD9 1431 aa9.19□□□□□ -0.94
USP28-202ENST00000535607 PSME1Q06323 249 aa9.18□□□□□ -0.94
USP28-202ENST00000535607 MAP3K1Q13233 1512 aa9.18□□□□□ -0.94
USP28-202ENST00000535607 TLL2Q9Y6L7 1015 aa9.18□□□□□ -0.94
USP28-202ENST00000535607 CFAP43Q8NDM7 1665 aa9.17□□□□□ -0.94
USP28-202ENST00000535607 RAPGEF6Q8TEU7 1601 aa9.17□□□□□ -0.94
USP28-202ENST00000535607 CCDC18Q5T9S5 1454 aa9.17□□□□□ -0.94
USP28-202ENST00000535607 RASA1P20936 1047 aa9.17□□□□□ -0.94
USP28-202ENST00000535607 MRGPRX2Q96LB1 330 aa9.17□□□□□ -0.94
USP28-202ENST00000535607 TTC24A2A3L6 582 aaPredicted RBP9.16□□□□□ -0.94
USP28-202ENST00000535607 ESPNB1AK53 854 aa9.16□□□□□ -0.94
USP28-202ENST00000535607 ADH1CP00326 375 aa9.16□□□□□ -0.94
USP28-202ENST00000535607 NR5A1Q13285 461 aa9.16□□□□□ -0.94
USP28-202ENST00000535607 PHTF2Q8N3S3 785 aa9.16□□□□□ -0.94
USP28-202ENST00000535607 MPNDQ8N594 471 aa9.16□□□□□ -0.94
USP28-202ENST00000535607 CDK15Q96Q40 435 aa9.16□□□□□ -0.94
USP28-202ENST00000535607 ABCA8O94911 1581 aa9.16□□□□□ -0.94
USP28-202ENST00000535607 ALDH1A1P00352 501 aa9.15□□□□□ -0.94
USP28-202ENST00000535607 INTS6LQ5JSJ4 861 aaKnown RBP9.15□□□□□ -0.94
USP28-202ENST00000535607 CYP4X1Q8N118 509 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms