RNA–Protein interactions for RNA: ENST00000533078.5

CMTM1-216, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-216ENST00000533078 TONSLQ96HA7 1378 aa16.27■□□□□ 0.2
CMTM1-216ENST00000533078 MSH5O43196 834 aa16.27■□□□□ 0.2
CMTM1-216ENST00000533078 GIGYF1O75420 1035 aaPredicted RBP16.27■□□□□ 0.2
CMTM1-216ENST00000533078 PRIM1P49642 420 aaKnown RBP16.27■□□□□ 0.2
CMTM1-216ENST00000533078 PNPLA7Q6ZV29 1317 aa16.26■□□□□ 0.19
CMTM1-216ENST00000533078 ZCRB1Q8TBF4 217 aaKnown RBP16.26■□□□□ 0.19
CMTM1-216ENST00000533078 CCNL1Q9UK58 526 aaPredicted RBP16.26■□□□□ 0.19
CMTM1-216ENST00000533078 SMG6Q86US8 1419 aaKnown RBP16.26■□□□□ 0.19
CMTM1-216ENST00000533078 USP47Q96K76 1375 aa16.26■□□□□ 0.19
CMTM1-216ENST00000533078 GRIN3BO60391 1043 aa16.25■□□□□ 0.19
CMTM1-216ENST00000533078 CGNL1Q0VF96 1302 aa16.24■□□□□ 0.19
CMTM1-216ENST00000533078 HOXC9P31274 260 aa16.24■□□□□ 0.19
CMTM1-216ENST00000533078 DOT1LQ8TEK3 1739 aa16.24■□□□□ 0.19
CMTM1-216ENST00000533078 MAP3K19Q56UN5 1328 aa16.23■□□□□ 0.19
CMTM1-216ENST00000533078 RAPGEF4Q8WZA2 1011 aa16.23■□□□□ 0.19
CMTM1-216ENST00000533078 RTL1A6NKG5 1358 aa16.22■□□□□ 0.19
CMTM1-216ENST00000533078 KCNQ4P56696 695 aa16.21■□□□□ 0.19
CMTM1-216ENST00000533078 LY75O60449 1722 aa16.21■□□□□ 0.19
CMTM1-216ENST00000533078 CEP350Q5VT06 3117 aa16.2■□□□□ 0.18
CMTM1-216ENST00000533078 TUBGCP6Q96RT7 1819 aa16.2■□□□□ 0.18
CMTM1-216ENST00000533078 COL24A1Q17RW2 1714 aa16.19■□□□□ 0.18
CMTM1-216ENST00000533078 TATP17735 454 aaPredicted RBP16.19■□□□□ 0.18
CMTM1-216ENST00000533078 FLAD1Q8NFF5 587 aa16.19■□□□□ 0.18
CMTM1-216ENST00000533078 NLGN2Q8NFZ4 835 aa16.19■□□□□ 0.18
CMTM1-216ENST00000533078 MEGF6O75095 1541 aa16.19■□□□□ 0.18
CMTM1-216ENST00000533078 NSD2O96028 1365 aa16.18■□□□□ 0.18
CMTM1-216ENST00000533078 ST20-MTHFSA0A0A6YYL1 179 aa16.18■□□□□ 0.18
CMTM1-216ENST00000533078 PCDH11XQ9BZA7 1347 aa16.18■□□□□ 0.18
CMTM1-216ENST00000533078 PCDH11YQ9BZA8 1340 aa16.18■□□□□ 0.18
CMTM1-216ENST00000533078 RRS1Q15050 365 aaKnown RBP16.17■□□□□ 0.18
CMTM1-216ENST00000533078 RGPD2P0DJD1 1756 aa16.16■□□□□ 0.18
CMTM1-216ENST00000533078 COL23A1Q86Y22 540 aaPredicted RBP16.16■□□□□ 0.18
CMTM1-216ENST00000533078 SHANK3Q9BYB0 1731 aa16.16■□□□□ 0.18
CMTM1-216ENST00000533078 TMF1P82094 1093 aa16.15■□□□□ 0.18
CMTM1-216ENST00000533078 NBPF6Q5VWK0 638 aa16.15■□□□□ 0.18
CMTM1-216ENST00000533078 MSL1Q68DK7 614 aa16.15■□□□□ 0.18
CMTM1-216ENST00000533078 NBPF4Q96M43 638 aa16.15■□□□□ 0.18
CMTM1-216ENST00000533078 TESK2Q96S53 571 aa16.15■□□□□ 0.18
CMTM1-216ENST00000533078 NSD3Q9BZ95 1437 aa16.14■□□□□ 0.17
CMTM1-216ENST00000533078 FBLN1P23142 703 aa16.14■□□□□ 0.17
CMTM1-216ENST00000533078 USHBP1Q8N6Y0 703 aa16.14■□□□□ 0.17
CMTM1-216ENST00000533078 SMARCC1Q92922 1105 aaPredicted RBP16.14■□□□□ 0.17
CMTM1-216ENST00000533078 AK7Q96M32 723 aa16.14■□□□□ 0.17
CMTM1-216ENST00000533078 CD2APQ9Y5K6 639 aa16.14■□□□□ 0.17
CMTM1-216ENST00000533078 C5P01031 1676 aa16.14■□□□□ 0.17
CMTM1-216ENST00000533078 PALLDQ8WX93 1383 aa16.13■□□□□ 0.17
CMTM1-216ENST00000533078 YBX3P16989 372 aaKnown RBP eCLIP16.13■□□□□ 0.17
CMTM1-216ENST00000533078 CDCA8Q53HL2 280 aa16.13■□□□□ 0.17
CMTM1-216ENST00000533078 MPRIPQ6WCQ1 1025 aa16.13■□□□□ 0.17
CMTM1-216ENST00000533078 GGNBP2Q9H3C7 697 aa16.13■□□□□ 0.17
CMTM1-216ENST00000533078 FLT4P35916 1363 aa16.13■□□□□ 0.17
CMTM1-216ENST00000533078 GPBP1L1Q9HC44 474 aaPredicted RBP16.12■□□□□ 0.17
CMTM1-216ENST00000533078 INSRP06213 1382 aa16.12■□□□□ 0.17
CMTM1-216ENST00000533078 KIF24Q5T7B8 1368 aa16.12■□□□□ 0.17
CMTM1-216ENST00000533078 FYB1O15117 783 aa16.11■□□□□ 0.17
CMTM1-216ENST00000533078 ATP10DQ9P241 1426 aa16.1■□□□□ 0.17
CMTM1-216ENST00000533078 HSP90AB2PQ58FF8 381 aa16.09■□□□□ 0.17
CMTM1-216ENST00000533078 KIF20BQ96Q89 1820 aa16.08■□□□□ 0.17
CMTM1-216ENST00000533078 SPG7Q9UQ90 795 aa16.08■□□□□ 0.16
CMTM1-216ENST00000533078 PHF14O94880 888 aa16.07■□□□□ 0.16
CMTM1-216ENST00000533078 TAF1LQ8IZX4 1826 aa16.07■□□□□ 0.16
CMTM1-216ENST00000533078 C4BP0C0L5 1744 aa16.06■□□□□ 0.16
CMTM1-216ENST00000533078 PPM1GO15355 546 aaPredicted RBP16.05■□□□□ 0.16
CMTM1-216ENST00000533078 CYP27B1O15528 508 aa16.05■□□□□ 0.16
CMTM1-216ENST00000533078 SSFA2P28290 1259 aa16.05■□□□□ 0.16
CMTM1-216ENST00000533078 IGSF1Q8N6C5 1336 aa16.04■□□□□ 0.16
CMTM1-216ENST00000533078 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.04■□□□□ 0.16
CMTM1-216ENST00000533078 IFFO2Q5TF58 517 aa16.04■□□□□ 0.16
CMTM1-216ENST00000533078 ZNF526Q8TF50 670 aaPredicted RBP16.04■□□□□ 0.16
CMTM1-216ENST00000533078 TMOD3Q9NYL9 352 aa16.04■□□□□ 0.16
CMTM1-216ENST00000533078 ITGB4P16144 1822 aa16.03■□□□□ 0.16
CMTM1-216ENST00000533078 LOC102724428A0A0B4J2F2 783 aa16.02■□□□□ 0.16
CMTM1-216ENST00000533078 SIK1P57059 783 aa16.02■□□□□ 0.16
CMTM1-216ENST00000533078 PIGBQ92521 554 aa16.02■□□□□ 0.16
CMTM1-216ENST00000533078 PKD1L3Q7Z443 1732 aa16.02■□□□□ 0.15
CMTM1-216ENST00000533078 EMILIN1Q9Y6C2 1016 aa16.01■□□□□ 0.15
CMTM1-216ENST00000533078 UBR3Q6ZT12 1888 aa16.01■□□□□ 0.15
CMTM1-216ENST00000533078 TOGARAM1Q9Y4F4 1720 aa16■□□□□ 0.15
CMTM1-216ENST00000533078 GNPATO15228 680 aa16■□□□□ 0.15
CMTM1-216ENST00000533078 HSPA6P17066 643 aa16■□□□□ 0.15
CMTM1-216ENST00000533078 ATP6V1AP38606 617 aa16■□□□□ 0.15
CMTM1-216ENST00000533078 NKX1-1Q15270 411 aaPredicted RBP16■□□□□ 0.15
CMTM1-216ENST00000533078 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16■□□□□ 0.15
CMTM1-216ENST00000533078 ADCY9O60503 1353 aa16■□□□□ 0.15
CMTM1-216ENST00000533078 IFNL2Q8IZJ0 200 aa15.99■□□□□ 0.15
CMTM1-216ENST00000533078 WWC3Q9ULE0 1092 aa15.99■□□□□ 0.15
CMTM1-216ENST00000533078 LINC00116Q8NCU8 138 aa15.98■□□□□ 0.15
CMTM1-216ENST00000533078 WASHC2AQ641Q2 1341 aa15.97■□□□□ 0.15
CMTM1-216ENST00000533078 RTCBQ9Y3I0 505 aaKnown RBP15.96■□□□□ 0.15
CMTM1-216ENST00000533078 NCAPD2Q15021 1401 aa15.95■□□□□ 0.14
CMTM1-216ENST00000533078 HSP90AB1P08238 724 aaKnown RBP15.95■□□□□ 0.14
CMTM1-216ENST00000533078 MMP10P09238 476 aa15.95■□□□□ 0.14
CMTM1-216ENST00000533078 PHKG2P15735 406 aa15.95■□□□□ 0.14
CMTM1-216ENST00000533078 TRAPPC3LQ5T215 181 aa15.95■□□□□ 0.14
CMTM1-216ENST00000533078 AMIGO3Q86WK7 504 aa15.95■□□□□ 0.14
CMTM1-216ENST00000533078 NLGN1Q8N2Q7 840 aa15.95■□□□□ 0.14
CMTM1-216ENST00000533078 EYA1Q99502 592 aa15.95■□□□□ 0.14
CMTM1-216ENST00000533078 ASAP1Q9ULH1 1129 aa15.95■□□□□ 0.14
CMTM1-216ENST00000533078 MAP2P11137 1827 aaKnown RBP15.94■□□□□ 0.14
CMTM1-216ENST00000533078 TGFB2P61812 414 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms