RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 SOBPA7XYQ1 873 aa14.18□□□□□ -0.14
CSDE1-213ENST00000530784 PLPP7Q8NBV4 271 aa14.18□□□□□ -0.14
CSDE1-213ENST00000530784 INSM2Q96T92 566 aaPredicted RBP14.18□□□□□ -0.14
CSDE1-213ENST00000530784 ESF1Q9H501 851 aaKnown RBP14.18□□□□□ -0.14
CSDE1-213ENST00000530784 ATP5J2-PTCD1G3V325 749 aa14.17□□□□□ -0.14
CSDE1-213ENST00000530784 TRAK2O60296 914 aa14.17□□□□□ -0.14
CSDE1-213ENST00000530784 OXLD1Q5BKU9 147 aa14.17□□□□□ -0.14
CSDE1-213ENST00000530784 TTLL8A6PVC2 850 aa14.15□□□□□ -0.14
CSDE1-213ENST00000530784 MYCP01106 439 aaPredicted RBP14.15□□□□□ -0.14
CSDE1-213ENST00000530784 CTSOP43234 321 aaPredicted RBP14.15□□□□□ -0.14
CSDE1-213ENST00000530784 MAP7D1Q3KQU3 841 aa14.15□□□□□ -0.14
CSDE1-213ENST00000530784 MAN1A2O60476 641 aa14.14□□□□□ -0.15
CSDE1-213ENST00000530784 SKIP12755 728 aa14.14□□□□□ -0.15
CSDE1-213ENST00000530784 USP4Q13107 963 aa14.14□□□□□ -0.15
CSDE1-213ENST00000530784 CYP2U1Q7Z449 544 aa14.14□□□□□ -0.15
CSDE1-213ENST00000530784 GLMNQ92990 594 aa14.14□□□□□ -0.15
CSDE1-213ENST00000530784 ZNF775Q96BV0 537 aaPredicted RBP14.14□□□□□ -0.15
CSDE1-213ENST00000530784 DNMT3LQ9UJW3 386 aa14.14□□□□□ -0.15
CSDE1-213ENST00000530784 POLMQ9NP87 494 aaPredicted RBP14.13□□□□□ -0.15
CSDE1-213ENST00000530784 FIGNL2A6NMB9 653 aa14.12□□□□□ -0.15
CSDE1-213ENST00000530784 A0A1W2PRU2 124 aa14.11□□□□□ -0.15
CSDE1-213ENST00000530784 NFATC2IPQ8NCF5 419 aa14.11□□□□□ -0.15
CSDE1-213ENST00000530784 UCN2Q96RP3 112 aa14.11□□□□□ -0.15
CSDE1-213ENST00000530784 MEN1O00255 615 aa14.09□□□□□ -0.15
CSDE1-213ENST00000530784 ZMYND15Q9H091 742 aa14.09□□□□□ -0.15
CSDE1-213ENST00000530784 ARHGEF10LQ9HCE6 1279 aa14.09□□□□□ -0.15
CSDE1-213ENST00000530784 ZNF777Q9ULD5 760 aaPredicted RBP14.09□□□□□ -0.15
CSDE1-213ENST00000530784 FOXD4L5Q5VV16 416 aaPredicted RBP14.08□□□□□ -0.16
CSDE1-213ENST00000530784 TBC1D9Q6ZT07 1266 aa14.08□□□□□ -0.16
CSDE1-213ENST00000530784 SIRT1Q96EB6 747 aa14.08□□□□□ -0.16
CSDE1-213ENST00000530784 RAB6BQ9NRW1 208 aa14.08□□□□□ -0.16
CSDE1-213ENST00000530784 DEPDC4Q8N2C3 294 aa14.07□□□□□ -0.16
CSDE1-213ENST00000530784 RNF217Q8TC41 542 aa14.07□□□□□ -0.16
CSDE1-213ENST00000530784 CALR3Q96L12 384 aaKnown RBP14.07□□□□□ -0.16
CSDE1-213ENST00000530784 GNRH1P01148 92 aa14.06□□□□□ -0.16
CSDE1-213ENST00000530784 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.06□□□□□ -0.16
CSDE1-213ENST00000530784 USP17L5A8MUK1 530 aa14.05□□□□□ -0.16
CSDE1-213ENST00000530784 CLN3Q13286 438 aa14.05□□□□□ -0.16
CSDE1-213ENST00000530784 NCOA4Q13772 614 aa14.05□□□□□ -0.16
CSDE1-213ENST00000530784 STAU1O95793 577 aaKnown RBP14.04□□□□□ -0.16
CSDE1-213ENST00000530784 RNF144AP50876 292 aaPredicted RBP14.04□□□□□ -0.16
CSDE1-213ENST00000530784 EML3Q32P44 896 aa14.04□□□□□ -0.16
CSDE1-213ENST00000530784 NLRP3Q96P20 1036 aa14.04□□□□□ -0.16
CSDE1-213ENST00000530784 ATP9BO43861 1147 aa14.03□□□□□ -0.16
CSDE1-213ENST00000530784 LZTS3O60299 673 aaPredicted RBP14.02□□□□□ -0.17
CSDE1-213ENST00000530784 IL2RAP01589 272 aa14.02□□□□□ -0.17
CSDE1-213ENST00000530784 NXF1Q9UBU9 619 aaKnown RBP14.02□□□□□ -0.17
CSDE1-213ENST00000530784 TERTO14746 1132 aaKnown RBP14.01□□□□□ -0.17
CSDE1-213ENST00000530784 CNKSR1Q969H4 720 aa14.01□□□□□ -0.17
CSDE1-213ENST00000530784 TFIP11Q9UBB9 837 aaKnown RBP14.01□□□□□ -0.17
CSDE1-213ENST00000530784 USP17L3A6NCW0 530 aa14□□□□□ -0.17
CSDE1-213ENST00000530784 USP17L4A6NCW7 530 aa14□□□□□ -0.17
CSDE1-213ENST00000530784 USP17L2Q6R6M4 530 aa14□□□□□ -0.17
CSDE1-213ENST00000530784 USP17L1Q7RTZ2 530 aa14□□□□□ -0.17
CSDE1-213ENST00000530784 ESYT1Q9BSJ8 1104 aa14□□□□□ -0.17
CSDE1-213ENST00000530784 ETNK1Q9HBU6 452 aa14□□□□□ -0.17
CSDE1-213ENST00000530784 NOD1Q9Y239 953 aa14□□□□□ -0.17
CSDE1-213ENST00000530784 GPC1P35052 558 aa13.99□□□□□ -0.17
CSDE1-213ENST00000530784 VEGFBP49765 207 aa13.99□□□□□ -0.17
CSDE1-213ENST00000530784 PTSQ03393 145 aa13.99□□□□□ -0.17
CSDE1-213ENST00000530784 LYSMD3Q7Z3D4 306 aa13.99□□□□□ -0.17
CSDE1-213ENST00000530784 PRICKLE2Q7Z3G6 844 aa13.99□□□□□ -0.17
CSDE1-213ENST00000530784 PLEKHM2Q8IWE5 1019 aa13.99□□□□□ -0.17
CSDE1-213ENST00000530784 XAGE2Q96GT9 111 aa13.99□□□□□ -0.17
CSDE1-213ENST00000530784 PCDHGA11Q9Y5H2 935 aa13.99□□□□□ -0.17
CSDE1-213ENST00000530784 NFX1Q12986 1120 aaKnown RBP13.98□□□□□ -0.17
CSDE1-213ENST00000530784 SCNN1DP51172 638 aa13.97□□□□□ -0.17
CSDE1-213ENST00000530784 CENPCQ03188 943 aa13.97□□□□□ -0.17
CSDE1-213ENST00000530784 ESCO1Q5FWF5 840 aa13.97□□□□□ -0.17
CSDE1-213ENST00000530784 SLC27A3Q5K4L6 730 aa13.97□□□□□ -0.17
CSDE1-213ENST00000530784 GRIP2Q9C0E4 1043 aa13.97□□□□□ -0.17
CSDE1-213ENST00000530784 HRH3Q9Y5N1 445 aa13.97□□□□□ -0.17
CSDE1-213ENST00000530784 PALM3A6NDB9 673 aaPredicted RBP13.96□□□□□ -0.17
CSDE1-213ENST00000530784 GTF2IP78347 998 aa13.96□□□□□ -0.17
CSDE1-213ENST00000530784 TREML4Q6UXN2 200 aa13.96□□□□□ -0.17
CSDE1-213ENST00000530784 PPP1R12CQ9BZL4 782 aa13.96□□□□□ -0.17
CSDE1-213ENST00000530784 GDF10P55107 478 aa13.95□□□□□ -0.18
CSDE1-213ENST00000530784 MAFBQ9Y5Q3 323 aaPredicted RBP13.95□□□□□ -0.18
CSDE1-213ENST00000530784 RHOQP17081 205 aa13.94□□□□□ -0.18
CSDE1-213ENST00000530784 PPFIA3O75145 1194 aa13.93□□□□□ -0.18
CSDE1-213ENST00000530784 WFS1O76024 890 aa13.93□□□□□ -0.18
CSDE1-213ENST00000530784 INHAP05111 366 aa13.93□□□□□ -0.18
CSDE1-213ENST00000530784 C14orf37Q86TY3 774 aa13.93□□□□□ -0.18
CSDE1-213ENST00000530784 NPAS3Q8IXF0 933 aa13.93□□□□□ -0.18
CSDE1-213ENST00000530784 TMEM229AB2RXF0 380 aa13.92□□□□□ -0.18
CSDE1-213ENST00000530784 H3BM21 787 aa13.92□□□□□ -0.18
CSDE1-213ENST00000530784 POU4F2Q12837 409 aa13.92□□□□□ -0.18
CSDE1-213ENST00000530784 FHDC1Q9C0D6 1143 aaPredicted RBP13.92□□□□□ -0.18
CSDE1-213ENST00000530784 MKRN1Q9UHC7 482 aaKnown RBP13.92□□□□□ -0.18
CSDE1-213ENST00000530784 SENP3-EIF4A1A0A087X0R7 540 aa13.91□□□□□ -0.18
CSDE1-213ENST00000530784 SLC35F4A4IF30 521 aa13.91□□□□□ -0.18
CSDE1-213ENST00000530784 PSME1Q06323 249 aa13.91□□□□□ -0.18
CSDE1-213ENST00000530784 LCE2AQ5TA79 106 aaPredicted RBP13.91□□□□□ -0.18
CSDE1-213ENST00000530784 CCDC155Q8N6L0 562 aa13.91□□□□□ -0.18
CSDE1-213ENST00000530784 CLDN10P78369 228 aa13.9□□□□□ -0.18
CSDE1-213ENST00000530784 LCE2CQ5TA81 110 aa13.9□□□□□ -0.18
CSDE1-213ENST00000530784 TRIM50Q86XT4 487 aa13.9□□□□□ -0.18
CSDE1-213ENST00000530784 SLC16A10Q8TF71 515 aa13.9□□□□□ -0.18
CSDE1-213ENST00000530784 ZSCAN10Q96SZ4 725 aaPredicted RBP13.9□□□□□ -0.18
CSDE1-213ENST00000530784 WASLO00401 505 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms