RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	27.79	■■■□□ 2.04
CD44-222	ENST00000526025	PDE3B	Q13370	1112 aa		27.78	■■■□□ 2.04
CD44-222	ENST00000526025	BCL9	O00512	1426 aa		27.76	■■■□□ 2.04
CD44-222	ENST00000526025	U2SURP	O15042	1029 aa	Known RBP	27.76	■■■□□ 2.03
CD44-222	ENST00000526025	AEBP1	Q8IUX7	1158 aa		27.76	■■■□□ 2.03
CD44-222	ENST00000526025	ZCRB1	Q8TBF4	217 aa	Known RBP	27.75	■■■□□ 2.03
CD44-222	ENST00000526025	PCDH11X	Q9BZA7	1347 aa		27.72	■■■□□ 2.03
CD44-222	ENST00000526025	PCDH11Y	Q9BZA8	1340 aa		27.72	■■■□□ 2.03
CD44-222	ENST00000526025	DIEXF	Q68CQ4	756 aa	Known RBP	27.72	■■■□□ 2.03
CD44-222	ENST00000526025	SPG7	Q9UQ90	795 aa		27.72	■■■□□ 2.03
CD44-222	ENST00000526025	SBF2	Q86WG5	1849 aa		27.71	■■■□□ 2.03
CD44-222	ENST00000526025	FCHSD2	O94868	740 aa		27.71	■■■□□ 2.03
CD44-222	ENST00000526025	U2AF1L5	P0DN76	240 aa	Predicted RBP	27.71	■■■□□ 2.03
CD44-222	ENST00000526025	U2AF1	Q01081	240 aa	Known RBP eCLIP	27.71	■■■□□ 2.03
CD44-222	ENST00000526025	AMOT	Q4VCS5	1084 aa		27.71	■■■□□ 2.03
CD44-222	ENST00000526025	HMOX1	P09601	288 aa		27.7	■■■□□ 2.02
CD44-222	ENST00000526025	MARCH10	Q8NA82	808 aa	Predicted RBP	27.7	■■■□□ 2.02
CD44-222	ENST00000526025	FAM196A	Q6ZSG2	479 aa		27.69	■■■□□ 2.02
CD44-222	ENST00000526025	RSPH6A	Q9H0K4	717 aa		27.69	■■■□□ 2.02
CD44-222	ENST00000526025	PLEKHO1	Q53GL0	409 aa	Predicted RBP	27.68	■■■□□ 2.02
CD44-222	ENST00000526025	EP400	Q96L91	3159 aa		27.66	■■■□□ 2.02
CD44-222	ENST00000526025	PNN	Q9H307	717 aa	Known RBP	27.65	■■■□□ 2.02
CD44-222	ENST00000526025	NHS	Q6T4R5	1651 aa		27.63	■■■□□ 2.01
CD44-222	ENST00000526025	CYP27B1	O15528	508 aa		27.63	■■■□□ 2.01
CD44-222	ENST00000526025	PRKAR2B	P31323	418 aa		27.63	■■■□□ 2.01
CD44-222	ENST00000526025	WDR43	Q15061	677 aa	Known RBP eCLIP	27.63	■■■□□ 2.01
CD44-222	ENST00000526025	DDX54	Q8TDD1	881 aa	Known RBP	27.63	■■■□□ 2.01
CD44-222	ENST00000526025	NKX1-1	Q15270	411 aa	Predicted RBP	27.62	■■■□□ 2.01
CD44-222	ENST00000526025	IFNL2	Q8IZJ0	200 aa		27.62	■■■□□ 2.01
CD44-222	ENST00000526025	DOT1L	Q8TEK3	1739 aa		27.61	■■■□□ 2.01
CD44-222	ENST00000526025	MRS2	Q9HD23	443 aa		27.61	■■■□□ 2.01
CD44-222	ENST00000526025	VIRMA	Q69YN4	1812 aa	Known RBP	27.6	■■■□□ 2.01
CD44-222	ENST00000526025	PHKG2	P15735	406 aa		27.6	■■■□□ 2.01
CD44-222	ENST00000526025	CCDC184	Q52MB2	194 aa		27.6	■■■□□ 2.01
CD44-222	ENST00000526025	KAT6B	Q8WYB5	2073 aa		27.6	■■■□□ 2.01
CD44-222	ENST00000526025	TNS1	Q9HBL0	1735 aa	Known RBP	27.59	■■■□□ 2.01
CD44-222	ENST00000526025	HSP90AB1	P08238	724 aa	Known RBP	27.59	■■■□□ 2.01
CD44-222	ENST00000526025	FAM182B	Q5T319	152 aa		27.59	■■■□□ 2.01
CD44-222	ENST00000526025	ZNF530	Q6P9A1	599 aa	Predicted RBP	27.59	■■■□□ 2.01
CD44-222	ENST00000526025	GAS2L2	Q8NHY3	880 aa		27.59	■■■□□ 2.01
CD44-222	ENST00000526025	PLEKHF1	Q96S99	279 aa		27.59	■■■□□ 2.01
CD44-222	ENST00000526025	ADAMTS7	Q9UKP4	1686 aa		27.59	■■■□□ 2.01
CD44-222	ENST00000526025	CCER2	I3L3R5	266 aa		27.58	■■■□□ 2.01
CD44-222	ENST00000526025	CCDC125	Q86Z20	511 aa		27.58	■■■□□ 2.01
CD44-222	ENST00000526025	TOGARAM1	Q9Y4F4	1720 aa		27.58	■■■□□ 2.01
CD44-222	ENST00000526025	SCN11A	Q9UI33	1791 aa		27.58	■■■□□ 2
CD44-222	ENST00000526025	ITGB4	P16144	1822 aa		27.56	■■■□□ 2
CD44-222	ENST00000526025	NEFM	P07197	916 aa		27.56	■■■□□ 2
CD44-222	ENST00000526025	MTHFSD	Q2M296	383 aa	Known RBP	27.56	■■■□□ 2
CD44-222	ENST00000526025	AKAP4	Q5JQC9	854 aa		27.56	■■■□□ 2
CD44-222	ENST00000526025	C1orf141	Q5JVX7	400 aa		27.56	■■■□□ 2
CD44-222	ENST00000526025	PNISR	Q8TF01	805 aa	Known RBP	27.56	■■■□□ 2
CD44-222	ENST00000526025	PHACTR3	Q96KR7	559 aa		27.55	■■■□□ 2
CD44-222	ENST00000526025	ADAMTS8	Q9UP79	889 aa		27.55	■■■□□ 2
CD44-222	ENST00000526025	DLG5	Q8TDM6	1919 aa		27.54	■■■□□ 2
CD44-222	ENST00000526025	RGPD3	A6NKT7	1758 aa	Predicted RBP	27.53	■■■□□ 2
CD44-222	ENST00000526025	RGPD4	Q7Z3J3	1758 aa		27.53	■■■□□ 2
CD44-222	ENST00000526025	MAPK8IP3	Q9UPT6	1336 aa		27.52	■■■□□ 2
CD44-222	ENST00000526025	UPF1	Q92900	1129 aa	Known RBP eCLIP	27.52	■■■□□ 2
CD44-222	ENST00000526025	DCAF5	Q96JK2	942 aa		27.52	■■■□□ 2
CD44-222	ENST00000526025	BCL11B	Q9C0K0	894 aa	Predicted RBP	27.52	■■■□□ 2
CD44-222	ENST00000526025	MAP3K5	Q99683	1374 aa		27.51	■■□□□ 1.99
CD44-222	ENST00000526025	BTAF1	O14981	1849 aa		27.51	■■□□□ 1.99
CD44-222	ENST00000526025	KDM6A	O15550	1401 aa	Predicted RBP	27.5	■■□□□ 1.99
CD44-222	ENST00000526025	SOCS7	O14512	581 aa		27.5	■■□□□ 1.99
CD44-222	ENST00000526025	RUNDC1	Q96C34	613 aa		27.5	■■□□□ 1.99
CD44-222	ENST00000526025	TRIM37	O94972	964 aa		27.48	■■□□□ 1.99
CD44-222	ENST00000526025	MRC1	P22897	1456 aa		27.48	■■□□□ 1.99
CD44-222	ENST00000526025	ERVV-2	B6SEH9	535 aa		27.47	■■□□□ 1.99
CD44-222	ENST00000526025	GNAT3	A8MTJ3	354 aa		27.46	■■□□□ 1.99
CD44-222	ENST00000526025	HTATSF1	O43719	755 aa	Known RBP	27.46	■■□□□ 1.99
CD44-222	ENST00000526025	NFE2L2	Q16236	605 aa		27.46	■■□□□ 1.99
CD44-222	ENST00000526025	SF3B2	Q13435	895 aa	Known RBP	27.45	■■□□□ 1.98
CD44-222	ENST00000526025	MIER1	Q8N108	512 aa		27.45	■■□□□ 1.98
CD44-222	ENST00000526025	ACSBG1	Q96GR2	724 aa		27.45	■■□□□ 1.98
CD44-222	ENST00000526025	PRIM1	P49642	420 aa	Known RBP	27.44	■■□□□ 1.98
CD44-222	ENST00000526025	SIPA1L3	O60292	1781 aa	Predicted RBP	27.43	■■□□□ 1.98
CD44-222	ENST00000526025	KCNQ2	O43526	872 aa		27.43	■■□□□ 1.98
CD44-222	ENST00000526025	MPRIP	Q6WCQ1	1025 aa		27.43	■■□□□ 1.98
CD44-222	ENST00000526025	CEMIP	Q8WUJ3	1361 aa		27.42	■■□□□ 1.98
CD44-222	ENST00000526025	RNMT	O43148	476 aa	Known RBP	27.41	■■□□□ 1.98
CD44-222	ENST00000526025	CCDC146	Q8IYE0	955 aa		27.41	■■□□□ 1.98
CD44-222	ENST00000526025	TMPO	P42166	694 aa	Known RBP	27.4	■■□□□ 1.98
CD44-222	ENST00000526025	LY75	O60449	1722 aa		27.39	■■□□□ 1.98
CD44-222	ENST00000526025	PLSCR1	O15162	318 aa		27.39	■■□□□ 1.98
CD44-222	ENST00000526025	BAG6	P46379	1132 aa		27.39	■■□□□ 1.98
CD44-222	ENST00000526025	RTF1	Q92541	710 aa	Known RBP	27.39	■■□□□ 1.98
CD44-222	ENST00000526025	SYTL4	Q96C24	671 aa	Predicted RBP	27.39	■■□□□ 1.98
CD44-222	ENST00000526025	TMOD3	Q9NYL9	352 aa		27.39	■■□□□ 1.98
CD44-222	ENST00000526025	PTF1A	Q7RTS3	328 aa		27.38	■■□□□ 1.97
CD44-222	ENST00000526025	APBA3	O96018	575 aa		27.37	■■□□□ 1.97
CD44-222	ENST00000526025	LMOD3	Q0VAK6	560 aa		27.37	■■□□□ 1.97
CD44-222	ENST00000526025	IL17RE	Q8NFR9	667 aa		27.37	■■□□□ 1.97
CD44-222	ENST00000526025	LGR6	Q9HBX8	967 aa		27.37	■■□□□ 1.97
CD44-222	ENST00000526025	PAPPA	Q13219	1627 aa		27.37	■■□□□ 1.97
CD44-222	ENST00000526025	RREB1	Q92766	1687 aa		27.36	■■□□□ 1.97
CD44-222	ENST00000526025	CABP4	P57796	275 aa		27.36	■■□□□ 1.97
CD44-222	ENST00000526025	NCBP3	Q53F19	620 aa	Known RBP	27.36	■■□□□ 1.97
CD44-222	ENST00000526025	PIGB	Q92521	554 aa		27.36	■■□□□ 1.97
CD44-222	ENST00000526025	SLC52A2	Q9HAB3	445 aa		27.36	■■□□□ 1.97

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