RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	PNMA1	Q8ND90	353 aa		4.39	□□□□□ -1.71
CD44-212	ENST00000524922	OSBPL3	Q9H4L5	887 aa		4.39	□□□□□ -1.71
CD44-212	ENST00000524922	POLM	Q9NP87	494 aa	Predicted RBP	4.39	□□□□□ -1.71
CD44-212	ENST00000524922	THBS1	P07996	1170 aa		4.38	□□□□□ -1.71
CD44-212	ENST00000524922	GRIP2	Q9C0E4	1043 aa		4.38	□□□□□ -1.71
CD44-212	ENST00000524922	PCDHB9	Q9Y5E1	797 aa		4.38	□□□□□ -1.71
CD44-212	ENST00000524922	HRH3	Q9Y5N1	445 aa		4.38	□□□□□ -1.71
CD44-212	ENST00000524922		A0A1W2PRU2	124 aa		4.37	□□□□□ -1.71
CD44-212	ENST00000524922	ATP5J2-PTCD1	G3V325	749 aa		4.37	□□□□□ -1.71
CD44-212	ENST00000524922	GPC1	P35052	558 aa		4.37	□□□□□ -1.71
CD44-212	ENST00000524922	IRF5	Q13568	498 aa		4.37	□□□□□ -1.71
CD44-212	ENST00000524922	LYSMD3	Q7Z3D4	306 aa		4.37	□□□□□ -1.71
CD44-212	ENST00000524922	PHTF2	Q8N3S3	785 aa		4.37	□□□□□ -1.71
CD44-212	ENST00000524922	CCDC85A	Q96PX6	553 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-212	ENST00000524922	CHIC2	Q9UKJ5	165 aa		4.37	□□□□□ -1.71
CD44-212	ENST00000524922	ATP1B4	Q9UN42	357 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-212	ENST00000524922	ADAMTS8	Q9UP79	889 aa		4.37	□□□□□ -1.71
CD44-212	ENST00000524922	RHOQ	P17081	205 aa		4.36	□□□□□ -1.71
CD44-212	ENST00000524922	CLN3	Q13286	438 aa		4.36	□□□□□ -1.71
CD44-212	ENST00000524922	CC2D2B	Q6DHV5	1058 aa		4.36	□□□□□ -1.71
CD44-212	ENST00000524922	CCDC125	Q86Z20	511 aa		4.36	□□□□□ -1.71
CD44-212	ENST00000524922	ZNF837	Q96EG3	531 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-212	ENST00000524922	SPATA31C2	B4DYI2	1134 aa		4.35	□□□□□ -1.71
CD44-212	ENST00000524922	IL2RA	P01589	272 aa		4.35	□□□□□ -1.71
CD44-212	ENST00000524922	MCCD1	P59942	119 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-212	ENST00000524922	DBN1	Q16643	649 aa		4.35	□□□□□ -1.71
CD44-212	ENST00000524922	TSGA10IP	Q3SY00	556 aa		4.35	□□□□□ -1.71
CD44-212	ENST00000524922	SV2A	Q7L0J3	742 aa		4.35	□□□□□ -1.71
CD44-212	ENST00000524922	PRICKLE2	Q7Z3G6	844 aa		4.35	□□□□□ -1.71
CD44-212	ENST00000524922	TRIM22	Q8IYM9	498 aa		4.35	□□□□□ -1.71
CD44-212	ENST00000524922	CDCA7	Q9BWT1	371 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-212	ENST00000524922	CEP126	Q9P2H0	1117 aa		4.35	□□□□□ -1.71
CD44-212	ENST00000524922	TBC1D2B	Q9UPU7	963 aa		4.35	□□□□□ -1.71
CD44-212	ENST00000524922	NDUFB9	Q9Y6M9	179 aa		4.35	□□□□□ -1.71
CD44-212	ENST00000524922	LOC100996750	A0A140TA64	210 aa		4.34	□□□□□ -1.71
CD44-212	ENST00000524922	CDC14C	A4D256	554 aa		4.34	□□□□□ -1.71
CD44-212	ENST00000524922	UBAP2L	Q14157	1087 aa	Known RBP	4.34	□□□□□ -1.71
CD44-212	ENST00000524922	LYPD4	Q6UWN0	246 aa		4.34	□□□□□ -1.71
CD44-212	ENST00000524922	KRTAP4-6	Q9BYQ5	205 aa		4.34	□□□□□ -1.71
CD44-212	ENST00000524922	FHDC1	Q9C0D6	1143 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-212	ENST00000524922	DYRK1B	Q9Y463	629 aa		4.34	□□□□□ -1.71
CD44-212	ENST00000524922	ADAMTS2	O95450	1211 aa		4.33	□□□□□ -1.72
CD44-212	ENST00000524922	SRSF11	Q05519	484 aa	Known RBP	4.33	□□□□□ -1.72
CD44-212	ENST00000524922	POU4F2	Q12837	409 aa		4.33	□□□□□ -1.72
CD44-212	ENST00000524922	TPRN	Q4KMQ1	711 aa		4.33	□□□□□ -1.72
CD44-212	ENST00000524922	WDR44	Q5JSH3	913 aa		4.33	□□□□□ -1.72
CD44-212	ENST00000524922	RNF20	Q5VTR2	975 aa		4.33	□□□□□ -1.72
CD44-212	ENST00000524922	NBPF10	Q6P3W6	841 aa	Known RBP	4.33	□□□□□ -1.72
CD44-212	ENST00000524922	NBPF15	Q8N660	670 aa		4.33	□□□□□ -1.72
CD44-212	ENST00000524922	ARHGEF10L	Q9HCE6	1279 aa		4.33	□□□□□ -1.72
CD44-212	ENST00000524922	PCDHB11	Q9Y5F2	797 aa		4.33	□□□□□ -1.72
CD44-212	ENST00000524922	MEN1	O00255	615 aa		4.32	□□□□□ -1.72
CD44-212	ENST00000524922	STAU1	O95793	577 aa	Known RBP	4.32	□□□□□ -1.72
CD44-212	ENST00000524922	RASSF7	Q02833	373 aa		4.32	□□□□□ -1.72
CD44-212	ENST00000524922	CYP2U1	Q7Z449	544 aa		4.32	□□□□□ -1.72
CD44-212	ENST00000524922	ZNF295-AS1	Q8N0V1	137 aa		4.32	□□□□□ -1.72
CD44-212	ENST00000524922	XAGE2	Q96GT9	111 aa		4.32	□□□□□ -1.72
CD44-212	ENST00000524922	GMCL1	Q96IK5	515 aa		4.32	□□□□□ -1.72
CD44-212	ENST00000524922	ESYT1	Q9BSJ8	1104 aa		4.32	□□□□□ -1.72
CD44-212	ENST00000524922	GPR25	O00155	361 aa		4.31	□□□□□ -1.72
CD44-212	ENST00000524922	GNRH1	P01148	92 aa		4.31	□□□□□ -1.72
CD44-212	ENST00000524922	CELA2B	P08218	269 aa	Predicted RBP	4.31	□□□□□ -1.72
CD44-212	ENST00000524922	SVOP	Q8N4V2	548 aa		4.31	□□□□□ -1.72
CD44-212	ENST00000524922	KCTD17	Q8N5Z5	321 aa		4.31	□□□□□ -1.72
CD44-212	ENST00000524922	CNKSR1	Q969H4	720 aa		4.31	□□□□□ -1.72
CD44-212	ENST00000524922	RAB6B	Q9NRW1	208 aa		4.31	□□□□□ -1.72
CD44-212	ENST00000524922	HCN2	Q9UL51	889 aa		4.31	□□□□□ -1.72
CD44-212	ENST00000524922	ITGB2	P05107	769 aa		4.3	□□□□□ -1.72
CD44-212	ENST00000524922	CENPC	Q03188	943 aa		4.3	□□□□□ -1.72
CD44-212	ENST00000524922	ACD	Q96AP0	544 aa		4.3	□□□□□ -1.72
CD44-212	ENST00000524922	ETNK1	Q9HBU6	452 aa		4.3	□□□□□ -1.72
CD44-212	ENST00000524922	MBIP	Q9NS73	344 aa		4.3	□□□□□ -1.72
CD44-212	ENST00000524922	IGF1R	P08069	1367 aa		4.29	□□□□□ -1.72
CD44-212	ENST00000524922	WASL	O00401	505 aa	Predicted RBP	4.29	□□□□□ -1.72
CD44-212	ENST00000524922	SCNN1D	P51172	638 aa		4.29	□□□□□ -1.72
CD44-212	ENST00000524922	TAS1R3	Q7RTX0	852 aa		4.29	□□□□□ -1.72
CD44-212	ENST00000524922	ZNF592	Q92610	1267 aa		4.29	□□□□□ -1.72
CD44-212	ENST00000524922	GTPBP3	Q969Y2	492 aa	Known RBP	4.29	□□□□□ -1.72
CD44-212	ENST00000524922	NDFIP2	Q9NV92	336 aa		4.29	□□□□□ -1.72
CD44-212	ENST00000524922	GDF11	O95390	407 aa		4.28	□□□□□ -1.72
CD44-212	ENST00000524922	F11	P03951	625 aa		4.28	□□□□□ -1.72
CD44-212	ENST00000524922	HOXB4	P17483	251 aa	Predicted RBP	4.28	□□□□□ -1.72
CD44-212	ENST00000524922	MCM6	Q14566	821 aa		4.28	□□□□□ -1.72
CD44-212	ENST00000524922	C4orf17	Q53FE4	359 aa		4.28	□□□□□ -1.72
CD44-212	ENST00000524922	SLC27A3	Q5K4L6	730 aa		4.28	□□□□□ -1.72
CD44-212	ENST00000524922	TMEM151A	Q8N4L1	468 aa		4.28	□□□□□ -1.72
CD44-212	ENST00000524922	TRIM52	Q96A61	297 aa		4.28	□□□□□ -1.72
CD44-212	ENST00000524922	NLRP3	Q96P20	1036 aa		4.28	□□□□□ -1.72
CD44-212	ENST00000524922	GDPD2	Q9HCC8	539 aa		4.28	□□□□□ -1.72
CD44-212	ENST00000524922	TIMMDC1	Q9NPL8	285 aa		4.28	□□□□□ -1.72
CD44-212	ENST00000524922	ZNF330	Q9Y3S2	320 aa	Predicted RBP	4.28	□□□□□ -1.72
CD44-212	ENST00000524922	APBB1	O00213	710 aa		4.27	□□□□□ -1.73
CD44-212	ENST00000524922	VAC14	Q08AM6	782 aa		4.27	□□□□□ -1.73
CD44-212	ENST00000524922	RIPOR1	Q6ZS17	1223 aa		4.27	□□□□□ -1.73
CD44-212	ENST00000524922	C1orf229	Q6ZS94	237 aa	Predicted RBP	4.27	□□□□□ -1.73
CD44-212	ENST00000524922	PPARGC1B	Q86YN6	1023 aa	Known RBP	4.27	□□□□□ -1.73
CD44-212	ENST00000524922	GAS2L1	Q99501	681 aa	Predicted RBP	4.27	□□□□□ -1.73
CD44-212	ENST00000524922	LRRC4B	Q9NT99	713 aa		4.27	□□□□□ -1.73
CD44-212	ENST00000524922	DNAAF2	Q9NVR5	837 aa	Known RBP	4.27	□□□□□ -1.73
CD44-212	ENST00000524922		H7C1W4	665 aa		4.26	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms