RNA–Protein interactions for RNA: ENST00000523359.1

SKP1-211, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 5

Gene SKP1, Length 748 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-211ENST00000523359 NR1H3Q13133 447 aa9.58□□□□□ -0.88
SKP1-211ENST00000523359 GLMNQ92990 594 aa9.58□□□□□ -0.88
SKP1-211ENST00000523359 INSM2Q96T92 566 aaPredicted RBP9.58□□□□□ -0.88
SKP1-211ENST00000523359 ZNF395Q9H8N7 513 aaPredicted RBP9.58□□□□□ -0.88
SKP1-211ENST00000523359 ADAMTS19Q8TE59 1207 aa9.57□□□□□ -0.88
SKP1-211ENST00000523359 CALR3Q96L12 384 aaKnown RBP9.57□□□□□ -0.88
SKP1-211ENST00000523359 PCDHB9Q9Y5E1 797 aa9.57□□□□□ -0.88
SKP1-211ENST00000523359 ESPNB1AK53 854 aa9.56□□□□□ -0.88
SKP1-211ENST00000523359 LILRA1O75019 489 aa9.56□□□□□ -0.88
SKP1-211ENST00000523359 ADD1P35611 737 aaKnown RBP9.56□□□□□ -0.88
SKP1-211ENST00000523359 POLMQ9NP87 494 aaPredicted RBP9.56□□□□□ -0.88
SKP1-211ENST00000523359 ADH1AP07327 375 aa9.55□□□□□ -0.88
SKP1-211ENST00000523359 HDGFL1Q5TGJ6 251 aa9.55□□□□□ -0.88
SKP1-211ENST00000523359 CCDC97Q96F63 343 aaPredicted RBP9.54□□□□□ -0.88
SKP1-211ENST00000523359 CYLDQ9NQC7 956 aa9.54□□□□□ -0.88
SKP1-211ENST00000523359 FAM181BA6NEQ2 426 aa9.53□□□□□ -0.88
SKP1-211ENST00000523359 GIGYF1O75420 1035 aaPredicted RBP9.53□□□□□ -0.88
SKP1-211ENST00000523359 EIF4G2P78344 907 aaKnown RBP eCLIP9.53□□□□□ -0.88
SKP1-211ENST00000523359 CCDC155Q8N6L0 562 aa9.53□□□□□ -0.88
SKP1-211ENST00000523359 ALG2Q9H553 416 aa9.53□□□□□ -0.88
SKP1-211ENST00000523359 SOX11P35716 441 aa9.52□□□□□ -0.89
SKP1-211ENST00000523359 SEPT12Q8IYM1 358 aa9.52□□□□□ -0.89
SKP1-211ENST00000523359 KDF1Q8NAX2 398 aaPredicted RBP9.52□□□□□ -0.89
SKP1-211ENST00000523359 RNF217Q8TC41 542 aa9.52□□□□□ -0.89
SKP1-211ENST00000523359 SERPINA10Q9UK55 444 aa9.52□□□□□ -0.89
SKP1-211ENST00000523359 PTGIRP43119 386 aa9.51□□□□□ -0.89
SKP1-211ENST00000523359 SEMA3FQ13275 785 aa9.51□□□□□ -0.89
SKP1-211ENST00000523359 GPR161Q8N6U8 529 aaKnown RBP9.51□□□□□ -0.89
SKP1-211ENST00000523359 SLC35F4A4IF30 521 aa9.5□□□□□ -0.89
SKP1-211ENST00000523359 FOXD4L5Q5VV16 416 aaPredicted RBP9.5□□□□□ -0.89
SKP1-211ENST00000523359 KRT76Q01546 638 aa9.47□□□□□ -0.89
SKP1-211ENST00000523359 CNTNAP3BQ96NU0 1288 aa9.47□□□□□ -0.89
SKP1-211ENST00000523359 CNTNAP3Q9BZ76 1288 aa9.47□□□□□ -0.89
SKP1-211ENST00000523359 CDC14CA4D256 554 aa9.46□□□□□ -0.9
SKP1-211ENST00000523359 ITGA6P23229 1130 aa9.46□□□□□ -0.9
SKP1-211ENST00000523359 UCN2Q96RP3 112 aa9.46□□□□□ -0.9
SKP1-211ENST00000523359 SENP3-EIF4A1A0A087X0R7 540 aa9.45□□□□□ -0.9
SKP1-211ENST00000523359 ATP5J2-PTCD1G3V325 749 aa9.45□□□□□ -0.9
SKP1-211ENST00000523359 VWA5B2Q8N398 1253 aa9.45□□□□□ -0.9
SKP1-211ENST00000523359 NANOS1Q8WY41 292 aaKnown RBP9.45□□□□□ -0.9
SKP1-211ENST00000523359 COL25A1Q9BXS0 654 aaPredicted RBP9.45□□□□□ -0.9
SKP1-211ENST00000523359 LYSMD3Q7Z3D4 306 aa9.44□□□□□ -0.9
SKP1-211ENST00000523359 TRIM52Q96A61 297 aa9.44□□□□□ -0.9
SKP1-211ENST00000523359 MEN1O00255 615 aa9.43□□□□□ -0.9
SKP1-211ENST00000523359 RNF20Q5VTR2 975 aa9.43□□□□□ -0.9
SKP1-211ENST00000523359 CC2D2BQ6DHV5 1058 aa9.43□□□□□ -0.9
SKP1-211ENST00000523359 PRICKLE2Q7Z3G6 844 aa9.43□□□□□ -0.9
SKP1-211ENST00000523359 PPP1R12CQ9BZL4 782 aa9.43□□□□□ -0.9
SKP1-211ENST00000523359 CEP126Q9P2H0 1117 aa9.43□□□□□ -0.9
SKP1-211ENST00000523359 PIK3CDO00329 1044 aa9.42□□□□□ -0.9
SKP1-211ENST00000523359 RHOQP17081 205 aa9.42□□□□□ -0.9
SKP1-211ENST00000523359 SCTRP47872 440 aa9.42□□□□□ -0.9
SKP1-211ENST00000523359 MCCD1P59942 119 aaPredicted RBP9.42□□□□□ -0.9
SKP1-211ENST00000523359 ERVK-9P63128 1117 aa9.42□□□□□ -0.9
SKP1-211ENST00000523359 RNFT1Q5M7Z0 435 aa9.42□□□□□ -0.9
SKP1-211ENST00000523359 SV2AQ7L0J3 742 aa9.42□□□□□ -0.9
SKP1-211ENST00000523359 ZNF592Q92610 1267 aa9.42□□□□□ -0.9
SKP1-211ENST00000523359 PCDHB11Q9Y5F2 797 aa9.42□□□□□ -0.9
SKP1-211ENST00000523359 PALM3A6NDB9 673 aaPredicted RBP9.41□□□□□ -0.9
SKP1-211ENST00000523359 RFX1P22670 979 aa9.41□□□□□ -0.9
SKP1-211ENST00000523359 RNF144AP50876 292 aaPredicted RBP9.41□□□□□ -0.9
SKP1-211ENST00000523359 TBC1D9Q6ZT07 1266 aa9.41□□□□□ -0.9
SKP1-211ENST00000523359 ARXQ96QS3 562 aa9.41□□□□□ -0.9
SKP1-211ENST00000523359 TFIP11Q9UBB9 837 aaKnown RBP9.41□□□□□ -0.9
SKP1-211ENST00000523359 A0A1W2PRU2 124 aa9.4□□□□□ -0.9
SKP1-211ENST00000523359 CFAP70Q5T0N1 1121 aa9.4□□□□□ -0.9
SKP1-211ENST00000523359 CCDC125Q86Z20 511 aa9.4□□□□□ -0.9
SKP1-211ENST00000523359 SLFNL1Q499Z3 407 aa9.39□□□□□ -0.91
SKP1-211ENST00000523359 CUEDC1Q9NWM3 386 aaPredicted RBP9.39□□□□□ -0.91
SKP1-211ENST00000523359 SKIP12755 728 aa9.38□□□□□ -0.91
SKP1-211ENST00000523359 LMOD1P29536 600 aaPredicted RBP9.38□□□□□ -0.91
SKP1-211ENST00000523359 CYP2U1Q7Z449 544 aa9.38□□□□□ -0.91
SKP1-211ENST00000523359 RNF135Q8IUD6 432 aa9.38□□□□□ -0.91
SKP1-211ENST00000523359 HOMEZQ8IX15 550 aa9.38□□□□□ -0.91
SKP1-211ENST00000523359 ATP9BO43861 1147 aa9.37□□□□□ -0.91
SKP1-211ENST00000523359 PHTF2Q8N3S3 785 aa9.37□□□□□ -0.91
SKP1-211ENST00000523359 NLRP3Q96P20 1036 aa9.37□□□□□ -0.91
SKP1-211ENST00000523359 OSBPL3Q9H4L5 887 aa9.37□□□□□ -0.91
SKP1-211ENST00000523359 ESF1Q9H501 851 aaKnown RBP9.37□□□□□ -0.91
SKP1-211ENST00000523359 MAFBQ9Y5Q3 323 aaPredicted RBP9.37□□□□□ -0.91
SKP1-211ENST00000523359 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.36□□□□□ -0.91
SKP1-211ENST00000523359 SLC27A3Q5K4L6 730 aa9.36□□□□□ -0.91
SKP1-211ENST00000523359 ARHGEF10LQ9HCE6 1279 aa9.36□□□□□ -0.91
SKP1-211ENST00000523359 GPC1P35052 558 aa9.35□□□□□ -0.91
SKP1-211ENST00000523359 CLN3Q13286 438 aa9.35□□□□□ -0.91
SKP1-211ENST00000523359 NFATC2IPQ8NCF5 419 aa9.35□□□□□ -0.91
SKP1-211ENST00000523359 CDCA7Q9BWT1 371 aaPredicted RBP9.35□□□□□ -0.91
SKP1-211ENST00000523359 RAB6BQ9NRW1 208 aa9.35□□□□□ -0.91
SKP1-211ENST00000523359 POU4F2Q12837 409 aa9.34□□□□□ -0.91
SKP1-211ENST00000523359 TSGA10IPQ3SY00 556 aa9.34□□□□□ -0.91
SKP1-211ENST00000523359 PLPP7Q8NBV4 271 aa9.34□□□□□ -0.91
SKP1-211ENST00000523359 CCDC85AQ96PX6 553 aaPredicted RBP9.34□□□□□ -0.91
SKP1-211ENST00000523359 USP17L5A8MUK1 530 aa9.33□□□□□ -0.92
SKP1-211ENST00000523359 ZNF385CQ66K41 422 aaPredicted RBP9.33□□□□□ -0.92
SKP1-211ENST00000523359 RIPOR1Q6ZS17 1223 aa9.33□□□□□ -0.92
SKP1-211ENST00000523359 DEPDC4Q8N2C3 294 aa9.33□□□□□ -0.92
SKP1-211ENST00000523359 SVOPQ8N4V2 548 aa9.33□□□□□ -0.92
SKP1-211ENST00000523359 WHAMMQ8TF30 809 aa9.33□□□□□ -0.92
SKP1-211ENST00000523359 USP17L3A6NCW0 530 aa9.32□□□□□ -0.92
SKP1-211ENST00000523359 USP17L4A6NCW7 530 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms