RNA–Protein interactions for RNA: ENST00000523359.1

SKP1-211, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 5

Gene SKP1, Length 748 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-211ENST00000523359 AEBP2Q6ZN18 517 aaPredicted RBP27.81■■■□□ 2.04
SKP1-211ENST00000523359 CHIC1Q5VXU3 224 aa26.6■■□□□ 1.85
SKP1-211ENST00000523359 SENP3Q9H4L4 574 aaPredicted RBP23.65■■□□□ 1.38
SKP1-211ENST00000523359 PHF23Q9BUL5 403 aaPredicted RBP23.4■■□□□ 1.34
SKP1-211ENST00000523359 FOXD1Q16676 465 aa22.04■■□□□ 1.12
SKP1-211ENST00000523359 PLPPR3Q6T4P5 718 aa21.35■■□□□ 1.01
SKP1-211ENST00000523359 PPP6R1Q9UPN7 881 aa20.8■□□□□ 0.92
SKP1-211ENST00000523359 ADRA2BP18089 450 aa20.76■□□□□ 0.91
SKP1-211ENST00000523359 PIAS4Q8N2W9 510 aaPredicted RBP20.67■□□□□ 0.9
SKP1-211ENST00000523359 MSH5O43196 834 aa20.5■□□□□ 0.87
SKP1-211ENST00000523359 POTEDQ86YR6 584 aa19.67■□□□□ 0.74
SKP1-211ENST00000523359 MAPK8IP2Q13387 824 aaPredicted RBP19.01■□□□□ 0.63
SKP1-211ENST00000523359 SCAF1Q9H7N4 1312 aaKnown RBP18.94■□□□□ 0.62
SKP1-211ENST00000523359 DMRT2Q9Y5R5 561 aa18.79■□□□□ 0.6
SKP1-211ENST00000523359 PPP4R3CPQ6ZMV5 832 aa18.77■□□□□ 0.6
SKP1-211ENST00000523359 CNKSR2Q8WXI2 1034 aa18.34■□□□□ 0.53
SKP1-211ENST00000523359 HOXD11P31277 338 aaPredicted RBP18.18■□□□□ 0.5
SKP1-211ENST00000523359 RNF216Q9NWF9 866 aaPredicted RBP18.1■□□□□ 0.49
SKP1-211ENST00000523359 NCBP3Q53F19 620 aaKnown RBP18.09■□□□□ 0.49
SKP1-211ENST00000523359 DCAF8L1A6NGE4 600 aa18.08■□□□□ 0.48
SKP1-211ENST00000523359 NPM3O75607 178 aaKnown RBP17.86■□□□□ 0.45
SKP1-211ENST00000523359 KCNA4P22459 653 aa17.74■□□□□ 0.43
SKP1-211ENST00000523359 RNF39Q9H2S5 420 aa17.53■□□□□ 0.4
SKP1-211ENST00000523359 CACNB1Q02641 598 aaPredicted RBP17.5■□□□□ 0.39
SKP1-211ENST00000523359 DNAJC5BQ9UF47 199 aa17.44■□□□□ 0.38
SKP1-211ENST00000523359 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.37■□□□□ 0.37
SKP1-211ENST00000523359 C1QBPQ07021 282 aaKnown RBP17.27■□□□□ 0.36
SKP1-211ENST00000523359 U3KPZ7 1027 aaPredicted RBP17.01■□□□□ 0.31
SKP1-211ENST00000523359 SLC4A2P04920 1241 aa17■□□□□ 0.31
SKP1-211ENST00000523359 SLC4A1APQ9BWU0 796 aaKnown RBP16.78■□□□□ 0.28
SKP1-211ENST00000523359 SPINK5Q9NQ38 1064 aaPredicted RBP16.73■□□□□ 0.27
SKP1-211ENST00000523359 CAPN15O75808 1086 aa16.68■□□□□ 0.26
SKP1-211ENST00000523359 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.56■□□□□ 0.24
SKP1-211ENST00000523359 HNRNPUL2Q1KMD3 747 aaKnown RBP16.56■□□□□ 0.24
SKP1-211ENST00000523359 APLP2Q06481 763 aa16.52■□□□□ 0.24
SKP1-211ENST00000523359 DSG3P32926 999 aa16.51■□□□□ 0.23
SKP1-211ENST00000523359 SAMD1Q6SPF0 538 aaPredicted RBP16.5■□□□□ 0.23
SKP1-211ENST00000523359 MYCNP04198 464 aaPredicted RBP16.49■□□□□ 0.23
SKP1-211ENST00000523359 TRHP20396 242 aaPredicted RBP16.48■□□□□ 0.23
SKP1-211ENST00000523359 FOXD4L1Q9NU39 408 aa16.45■□□□□ 0.22
SKP1-211ENST00000523359 ZNF219Q9P2Y4 722 aaPredicted RBP16.4■□□□□ 0.22
SKP1-211ENST00000523359 ABCB7O75027 752 aa16.35■□□□□ 0.21
SKP1-211ENST00000523359 ZBTB22O15209 634 aa16.32■□□□□ 0.2
SKP1-211ENST00000523359 ATF5Q9Y2D1 282 aaPredicted RBP16.14■□□□□ 0.17
SKP1-211ENST00000523359 POLA2Q14181 598 aa16.08■□□□□ 0.16
SKP1-211ENST00000523359 EHMT2Q96KQ7 1210 aa15.96■□□□□ 0.15
SKP1-211ENST00000523359 ATXN8OSP0DMR3 200 aa15.88■□□□□ 0.13
SKP1-211ENST00000523359 CSRNP3Q8WYN3 585 aa15.75■□□□□ 0.11
SKP1-211ENST00000523359 RBM42Q9BTD8 480 aaKnown RBP15.72■□□□□ 0.11
SKP1-211ENST00000523359 ZBTB12Q9Y330 459 aaPredicted RBP15.71■□□□□ 0.11
SKP1-211ENST00000523359 OSCARQ8IYS5 282 aa15.57■□□□□ 0.08
SKP1-211ENST00000523359 POTEHQ6S545 545 aa15.46■□□□□ 0.07
SKP1-211ENST00000523359 FBLN2P98095 1184 aa15.45■□□□□ 0.06
SKP1-211ENST00000523359 AKT1S1Q96B36 256 aa15.41■□□□□ 0.06
SKP1-211ENST00000523359 MKRN4PQ13434 485 aaPredicted RBP15.39■□□□□ 0.05
SKP1-211ENST00000523359 CHRDL2Q6WN34 429 aa15.31■□□□□ 0.04
SKP1-211ENST00000523359 REM2Q8IYK8 340 aaPredicted RBP15.29■□□□□ 0.04
SKP1-211ENST00000523359 SPDYE2BA6NHP3 402 aa15.27■□□□□ 0.04
SKP1-211ENST00000523359 SPDYE6P0CI01 402 aa15.27■□□□□ 0.04
SKP1-211ENST00000523359 SPDYE2Q495Y8 402 aa15.27■□□□□ 0.04
SKP1-211ENST00000523359 ZNF692Q9BU19 519 aaPredicted RBP15.15■□□□□ 0.02
SKP1-211ENST00000523359 PITPNM1O00562 1244 aa15.14■□□□□ 0.01
SKP1-211ENST00000523359 SSUH2Q9Y2M2 353 aa15.09■□□□□ 0.01
SKP1-211ENST00000523359 PIP4P2Q8N4L2 257 aa15□□□□□ -0.01
SKP1-211ENST00000523359 CLEC11AQ9Y240 323 aa14.97□□□□□ -0.01
SKP1-211ENST00000523359 PABPN1Q86U42 306 aaKnown RBP eCLIP14.94□□□□□ -0.02
SKP1-211ENST00000523359 SPDYE1Q8NFV5 336 aaPredicted RBP14.94□□□□□ -0.02
SKP1-211ENST00000523359 FXR2P51116 673 aaKnown RBP eCLIP14.92□□□□□ -0.02
SKP1-211ENST00000523359 SPDYE4A6NLX3 237 aa14.77□□□□□ -0.05
SKP1-211ENST00000523359 PRKAR2AP13861 404 aaKnown RBP14.76□□□□□ -0.05
SKP1-211ENST00000523359 PRR29P0C7W0 189 aa14.72□□□□□ -0.05
SKP1-211ENST00000523359 HAX1O00165 279 aa14.69□□□□□ -0.06
SKP1-211ENST00000523359 CHADLQ6NUI6 762 aa14.67□□□□□ -0.06
SKP1-211ENST00000523359 SP7Q8TDD2 431 aaPredicted RBP14.59□□□□□ -0.07
SKP1-211ENST00000523359 EVX2Q03828 476 aa14.53□□□□□ -0.08
SKP1-211ENST00000523359 STAG3Q9UJ98 1225 aa14.53□□□□□ -0.08
SKP1-211ENST00000523359 C19orf67A6NJJ6 358 aa14.44□□□□□ -0.1
SKP1-211ENST00000523359 FARP1Q9Y4F1 1045 aaPredicted RBP14.43□□□□□ -0.1
SKP1-211ENST00000523359 PROM2Q8N271 834 aa14.42□□□□□ -0.1
SKP1-211ENST00000523359 CREBZFQ9NS37 354 aa14.41□□□□□ -0.1
SKP1-211ENST00000523359 CD44P16070 742 aaKnown RBP14.3□□□□□ -0.12
SKP1-211ENST00000523359 FKBP8Q14318 412 aa14.3□□□□□ -0.12
SKP1-211ENST00000523359 GABBR2O75899 941 aa14.19□□□□□ -0.14
SKP1-211ENST00000523359 MNX1P50219 401 aaPredicted RBP14.17□□□□□ -0.14
SKP1-211ENST00000523359 ZRANB1Q9UGI0 708 aa14.14□□□□□ -0.15
SKP1-211ENST00000523359 NPM1P06748 294 aaKnown RBP eCLIP14.13□□□□□ -0.15
SKP1-211ENST00000523359 MIER1Q8N108 512 aa14.08□□□□□ -0.16
SKP1-211ENST00000523359 ZNF579Q8NAF0 562 aaKnown RBP14.06□□□□□ -0.16
SKP1-211ENST00000523359 PAK3O75914 559 aaPredicted RBP14.05□□□□□ -0.16
SKP1-211ENST00000523359 PLEKHG5O94827 1062 aa14.03□□□□□ -0.16
SKP1-211ENST00000523359 PLCD3Q8N3E9 789 aa14.01□□□□□ -0.17
SKP1-211ENST00000523359 CLCN6P51797 869 aa13.97□□□□□ -0.17
SKP1-211ENST00000523359 PHF12Q96QT6 1004 aa13.97□□□□□ -0.17
SKP1-211ENST00000523359 TSPYL2Q9H2G4 693 aaPredicted RBP13.94□□□□□ -0.18
SKP1-211ENST00000523359 GALR2O43603 387 aaPredicted RBP13.91□□□□□ -0.18
SKP1-211ENST00000523359 POTEIP0CG38 1075 aa13.9□□□□□ -0.18
SKP1-211ENST00000523359 FBXO3Q9UK99 471 aa13.89□□□□□ -0.19
SKP1-211ENST00000523359 DCBLD2Q96PD2 775 aa13.87□□□□□ -0.19
SKP1-211ENST00000523359 RASEFQ8IZ41 740 aa13.85□□□□□ -0.19
SKP1-211ENST00000523359 ZBTB47Q9UFB7 747 aaPredicted RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms