RNA–Protein interactions for RNA: ENST00000521439.1

NUDCD1-204, Transcript of NudC domain containing 1, humanhuman

TSL 1 (best)

Gene NUDCD1, Length 1,172 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD1-204ENST00000521439 CCDC85AQ96PX6 553 aaPredicted RBP12.19□□□□□ -0.46
NUDCD1-204ENST00000521439 ZFAND3Q9H8U3 227 aa12.19□□□□□ -0.46
NUDCD1-204ENST00000521439 PGPEP1Q9NXJ5 209 aa12.19□□□□□ -0.46
NUDCD1-204ENST00000521439 GMPR2Q9P2T1 348 aaKnown RBP12.19□□□□□ -0.46
NUDCD1-204ENST00000521439 CCDC125Q86Z20 511 aa12.18□□□□□ -0.46
NUDCD1-204ENST00000521439 SENP2Q9HC62 589 aa12.18□□□□□ -0.46
NUDCD1-204ENST00000521439 MKRN1Q9UHC7 482 aaKnown RBP12.18□□□□□ -0.46
NUDCD1-204ENST00000521439 DOLKQ9UPQ8 538 aa12.18□□□□□ -0.46
NUDCD1-204ENST00000521439 CSB-PGBD3P0DP91 1061 aa12.17□□□□□ -0.46
NUDCD1-204ENST00000521439 BMP1P13497 986 aa12.17□□□□□ -0.46
NUDCD1-204ENST00000521439 PDE4CQ08493 712 aa12.17□□□□□ -0.46
NUDCD1-204ENST00000521439 EML3Q32P44 896 aa12.17□□□□□ -0.46
NUDCD1-204ENST00000521439 TRAIPQ9BWF2 469 aa12.17□□□□□ -0.46
NUDCD1-204ENST00000521439 TRIM46Q7Z4K8 759 aa12.16□□□□□ -0.46
NUDCD1-204ENST00000521439 POTECB2RU33 542 aa12.15□□□□□ -0.46
NUDCD1-204ENST00000521439 MRPL14Q6P1L8 145 aaKnown RBP12.15□□□□□ -0.46
NUDCD1-204ENST00000521439 KIFC2Q96AC6 838 aa12.15□□□□□ -0.46
NUDCD1-204ENST00000521439 ATP5J2-PTCD1G3V325 749 aa12.14□□□□□ -0.47
NUDCD1-204ENST00000521439 RAB15P59190 212 aa12.14□□□□□ -0.47
NUDCD1-204ENST00000521439 TRIM52Q96A61 297 aa12.14□□□□□ -0.47
NUDCD1-204ENST00000521439 C11orf95C9JLR9 678 aaPredicted RBP12.13□□□□□ -0.47
NUDCD1-204ENST00000521439 ELOAQ14241 798 aaKnown RBP12.13□□□□□ -0.47
NUDCD1-204ENST00000521439 OXLD1Q5BKU9 147 aa12.13□□□□□ -0.47
NUDCD1-204ENST00000521439 MEIOBQ8N635 442 aa12.13□□□□□ -0.47
NUDCD1-204ENST00000521439 TRIM47Q96LD4 638 aa12.13□□□□□ -0.47
NUDCD1-204ENST00000521439 NOD1Q9Y239 953 aa12.13□□□□□ -0.47
NUDCD1-204ENST00000521439 USTQ9Y2C2 406 aa12.13□□□□□ -0.47
NUDCD1-204ENST00000521439 PCDHB11Q9Y5F2 797 aa12.13□□□□□ -0.47
NUDCD1-204ENST00000521439 FAM196BA6NMK8 535 aa12.12□□□□□ -0.47
NUDCD1-204ENST00000521439 SCARF1Q14162 830 aa12.12□□□□□ -0.47
NUDCD1-204ENST00000521439 CDCA7Q9BWT1 371 aaPredicted RBP12.12□□□□□ -0.47
NUDCD1-204ENST00000521439 ERVH48-1M5A8F1 160 aa12.11□□□□□ -0.47
NUDCD1-204ENST00000521439 UPP2O95045 317 aa12.11□□□□□ -0.47
NUDCD1-204ENST00000521439 RASA1P20936 1047 aa12.11□□□□□ -0.47
NUDCD1-204ENST00000521439 LARP1Q6PKG0 1096 aaKnown RBP12.11□□□□□ -0.47
NUDCD1-204ENST00000521439 TRIM50Q86XT4 487 aa12.11□□□□□ -0.47
NUDCD1-204ENST00000521439 USP4Q13107 963 aa12.1□□□□□ -0.47
NUDCD1-204ENST00000521439 CRTC2Q53ET0 693 aaPredicted RBP12.1□□□□□ -0.47
NUDCD1-204ENST00000521439 Q6ZVU0 165 aa12.1□□□□□ -0.47
NUDCD1-204ENST00000521439 LINC00528Q8N1L1 170 aa12.1□□□□□ -0.47
NUDCD1-204ENST00000521439 SIRT1Q96EB6 747 aa12.1□□□□□ -0.47
NUDCD1-204ENST00000521439 TMPRSS4Q9NRS4 437 aa12.1□□□□□ -0.47
NUDCD1-204ENST00000521439 USP17L15C9J2P7 530 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 USP17L10C9JJH3 530 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 USP17L13C9JLJ4 530 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 USP17L12C9JPN9 530 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 USP17L11C9JVI0 530 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 USP17L21D6R901 530 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 USP17L18D6R9N7 530 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 USP17L22D6RA61 530 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 USP17L17D6RBQ6 530 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 USP17L19D6RCP7 530 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 USP17L20D6RJB6 530 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 USP17L24Q0WX57 530 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 PTK7Q13308 1070 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 ZFP42Q96MM3 310 aa12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 NOVA2Q9UNW9 492 aaKnown RBP12.09□□□□□ -0.47
NUDCD1-204ENST00000521439 ATP1A2P50993 1020 aa12.08□□□□□ -0.48
NUDCD1-204ENST00000521439 OGFOD1Q8N543 542 aa12.08□□□□□ -0.48
NUDCD1-204ENST00000521439 ZNF784Q8NCA9 323 aaPredicted RBP12.08□□□□□ -0.48
NUDCD1-204ENST00000521439 PURBQ96QR8 312 aaKnown RBP12.08□□□□□ -0.48
NUDCD1-204ENST00000521439 TSEN34Q9BSV6 310 aaKnown RBP12.08□□□□□ -0.48
NUDCD1-204ENST00000521439 ZMIZ1Q9ULJ6 1067 aa12.08□□□□□ -0.48
NUDCD1-204ENST00000521439 CLDN10P78369 228 aa12.07□□□□□ -0.48
NUDCD1-204ENST00000521439 CBLBQ13191 982 aa12.07□□□□□ -0.48
NUDCD1-204ENST00000521439 TMEM88BA6NKF7 163 aa12.06□□□□□ -0.48
NUDCD1-204ENST00000521439 DNAAF2Q9NVR5 837 aaKnown RBP12.06□□□□□ -0.48
NUDCD1-204ENST00000521439 BMP2P12643 396 aa12.05□□□□□ -0.48
NUDCD1-204ENST00000521439 SNRPBP14678 240 aaKnown RBP12.05□□□□□ -0.48
NUDCD1-204ENST00000521439 GTF2IP78347 998 aa12.05□□□□□ -0.48
NUDCD1-204ENST00000521439 C6orf118Q5T5N4 469 aa12.05□□□□□ -0.48
NUDCD1-204ENST00000521439 LARGE2Q8N3Y3 721 aa12.05□□□□□ -0.48
NUDCD1-204ENST00000521439 LILRA1O75019 489 aa12.04□□□□□ -0.48
NUDCD1-204ENST00000521439 MYCP01106 439 aaPredicted RBP12.04□□□□□ -0.48
NUDCD1-204ENST00000521439 ANKMY2Q8IV38 441 aa12.04□□□□□ -0.48
NUDCD1-204ENST00000521439 STK32AQ8WU08 396 aa12.04□□□□□ -0.48
NUDCD1-204ENST00000521439 PCDHGA11Q9Y5H2 935 aa12.04□□□□□ -0.48
NUDCD1-204ENST00000521439 CARNS1A5YM72 827 aa12.03□□□□□ -0.48
NUDCD1-204ENST00000521439 ZBTB7BO15156 539 aaPredicted RBP12.03□□□□□ -0.48
NUDCD1-204ENST00000521439 TRIM26Q12899 539 aaPredicted RBP12.03□□□□□ -0.48
NUDCD1-204ENST00000521439 TMEM164Q5U3C3 297 aa12.03□□□□□ -0.48
NUDCD1-204ENST00000521439 KCTD17Q8N5Z5 321 aa12.03□□□□□ -0.48
NUDCD1-204ENST00000521439 FAM200AQ8TCP9 573 aa12.03□□□□□ -0.48
NUDCD1-204ENST00000521439 ZNF594Q96JF6 807 aaPredicted RBP12.03□□□□□ -0.48
NUDCD1-204ENST00000521439 CYLDQ9NQC7 956 aa12.03□□□□□ -0.48
NUDCD1-204ENST00000521439 ADH1AP07327 375 aa12.02□□□□□ -0.49
NUDCD1-204ENST00000521439 ERVK-9P63128 1117 aa12.02□□□□□ -0.49
NUDCD1-204ENST00000521439 KIAA1024Q9UPX6 916 aa12.02□□□□□ -0.49
NUDCD1-204ENST00000521439 SCTRP47872 440 aa12.01□□□□□ -0.49
NUDCD1-204ENST00000521439 DPYDQ12882 1025 aa12.01□□□□□ -0.49
NUDCD1-204ENST00000521439 CC2D2BQ6DHV5 1058 aa12.01□□□□□ -0.49
NUDCD1-204ENST00000521439 SIX5Q8N196 739 aa12.01□□□□□ -0.49
NUDCD1-204ENST00000521439 ESF1Q9H501 851 aaKnown RBP12.01□□□□□ -0.49
NUDCD1-204ENST00000521439 ADD1P35611 737 aaKnown RBP12□□□□□ -0.49
NUDCD1-204ENST00000521439 SPINT1O43278 529 aa11.99□□□□□ -0.49
NUDCD1-204ENST00000521439 DKK1O94907 266 aa11.99□□□□□ -0.49
NUDCD1-204ENST00000521439 PSME1Q06323 249 aa11.99□□□□□ -0.49
NUDCD1-204ENST00000521439 CCDC102BQ68D86 513 aa11.99□□□□□ -0.49
NUDCD1-204ENST00000521439 AEBP1Q8IUX7 1158 aa11.99□□□□□ -0.49
NUDCD1-204ENST00000521439 RBM19Q9Y4C8 960 aaKnown RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms