RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 CHD1O14646 1710 aa9.66□□□□□ -0.86
NUP54-218ENST00000515460 TMEM259Q4ZIN3 620 aa9.66□□□□□ -0.86
NUP54-218ENST00000515460 INSM2Q96T92 566 aaPredicted RBP9.66□□□□□ -0.86
NUP54-218ENST00000515460 TRIM34Q9BYJ4 488 aa9.66□□□□□ -0.86
NUP54-218ENST00000515460 ERVH48-1M5A8F1 160 aa9.65□□□□□ -0.86
NUP54-218ENST00000515460 CTSOP43234 321 aaPredicted RBP9.65□□□□□ -0.86
NUP54-218ENST00000515460 ZNF784Q8NCA9 323 aaPredicted RBP9.65□□□□□ -0.86
NUP54-218ENST00000515460 POLMQ9NP87 494 aaPredicted RBP9.64□□□□□ -0.87
NUP54-218ENST00000515460 KIF13AQ9H1H9 1805 aa9.63□□□□□ -0.87
NUP54-218ENST00000515460 ADD1P35611 737 aaKnown RBP9.62□□□□□ -0.87
NUP54-218ENST00000515460 CCDC155Q8N6L0 562 aa9.62□□□□□ -0.87
NUP54-218ENST00000515460 SMARCA4P51532 1647 aa9.61□□□□□ -0.87
NUP54-218ENST00000515460 GPR161Q8N6U8 529 aaKnown RBP9.61□□□□□ -0.87
NUP54-218ENST00000515460 PCDHB9Q9Y5E1 797 aa9.61□□□□□ -0.87
NUP54-218ENST00000515460 LILRA1O75019 489 aa9.6□□□□□ -0.87
NUP54-218ENST00000515460 CYLDQ9NQC7 956 aa9.6□□□□□ -0.87
NUP54-218ENST00000515460 CADPSQ9ULU8 1353 aa9.6□□□□□ -0.87
NUP54-218ENST00000515460 CEP164Q9UPV0 1460 aa9.59□□□□□ -0.87
NUP54-218ENST00000515460 ZBBXA8MT70 800 aa9.59□□□□□ -0.87
NUP54-218ENST00000515460 ESPNB1AK53 854 aa9.59□□□□□ -0.87
NUP54-218ENST00000515460 ADH1AP07327 375 aa9.59□□□□□ -0.87
NUP54-218ENST00000515460 GIGYF1O75420 1035 aaPredicted RBP9.58□□□□□ -0.88
NUP54-218ENST00000515460 GJD4Q96KN9 370 aaPredicted RBP9.58□□□□□ -0.88
NUP54-218ENST00000515460 CNTNAP3BQ96NU0 1288 aa9.58□□□□□ -0.88
NUP54-218ENST00000515460 CNTNAP3Q9BZ76 1288 aa9.58□□□□□ -0.88
NUP54-218ENST00000515460 BAZ1BQ9UIG0 1483 aaKnown RBP9.58□□□□□ -0.88
NUP54-218ENST00000515460 SLC35F4A4IF30 521 aa9.57□□□□□ -0.88
NUP54-218ENST00000515460 FBXO45P0C2W1 286 aa9.57□□□□□ -0.88
NUP54-218ENST00000515460 PTGIRP43119 386 aa9.57□□□□□ -0.88
NUP54-218ENST00000515460 VWA5B2Q8N398 1253 aa9.57□□□□□ -0.88
NUP54-218ENST00000515460 RNF217Q8TC41 542 aa9.57□□□□□ -0.88
NUP54-218ENST00000515460 CDC14CA4D256 554 aa9.56□□□□□ -0.88
NUP54-218ENST00000515460 KRT76Q01546 638 aa9.56□□□□□ -0.88
NUP54-218ENST00000515460 KDF1Q8NAX2 398 aaPredicted RBP9.56□□□□□ -0.88
NUP54-218ENST00000515460 COL25A1Q9BXS0 654 aaPredicted RBP9.56□□□□□ -0.88
NUP54-218ENST00000515460 KDM6BO15054 1643 aa9.56□□□□□ -0.88
NUP54-218ENST00000515460 SEPT12Q8IYM1 358 aa9.55□□□□□ -0.88
NUP54-218ENST00000515460 URB2Q14146 1524 aaKnown RBP9.55□□□□□ -0.88
NUP54-218ENST00000515460 ITGA6P23229 1130 aa9.54□□□□□ -0.88
NUP54-218ENST00000515460 GAPVD1Q14C86 1478 aa9.53□□□□□ -0.88
NUP54-218ENST00000515460 PRKCSHP14314 528 aaPredicted RBP9.53□□□□□ -0.88
NUP54-218ENST00000515460 FOXD4L5Q5VV16 416 aaPredicted RBP9.53□□□□□ -0.88
NUP54-218ENST00000515460 NANOS1Q8WY41 292 aaKnown RBP9.53□□□□□ -0.88
NUP54-218ENST00000515460 RNFT1Q5M7Z0 435 aa9.52□□□□□ -0.89
NUP54-218ENST00000515460 LYSMD3Q7Z3D4 306 aa9.52□□□□□ -0.89
NUP54-218ENST00000515460 PRICKLE2Q7Z3G6 844 aa9.52□□□□□ -0.89
NUP54-218ENST00000515460 SENP3-EIF4A1A0A087X0R7 540 aa9.51□□□□□ -0.89
NUP54-218ENST00000515460 ATP5J2-PTCD1G3V325 749 aa9.51□□□□□ -0.89
NUP54-218ENST00000515460 MEN1O00255 615 aa9.51□□□□□ -0.89
NUP54-218ENST00000515460 FAM69CQ0P6D2 419 aa9.51□□□□□ -0.89
NUP54-218ENST00000515460 SV2AQ7L0J3 742 aa9.51□□□□□ -0.89
NUP54-218ENST00000515460 FANCD2Q9BXW9 1451 aa9.51□□□□□ -0.89
NUP54-218ENST00000515460 RHOQP17081 205 aa9.5□□□□□ -0.89
NUP54-218ENST00000515460 NR1H3Q13133 447 aa9.5□□□□□ -0.89
NUP54-218ENST00000515460 TRIM52Q96A61 297 aa9.5□□□□□ -0.89
NUP54-218ENST00000515460 SNRKQ9NRH2 765 aa9.5□□□□□ -0.89
NUP54-218ENST00000515460 MTMR14Q8NCE2 650 aa9.49□□□□□ -0.89
NUP54-218ENST00000515460 BANK1Q8NDB2 785 aa9.49□□□□□ -0.89
NUP54-218ENST00000515460 CLASP1Q7Z460 1538 aa9.48□□□□□ -0.89
NUP54-218ENST00000515460 RNF20Q5VTR2 975 aa9.48□□□□□ -0.89
NUP54-218ENST00000515460 A0A1W2PRU2 124 aa9.47□□□□□ -0.89
NUP54-218ENST00000515460 APBB1O00213 710 aa9.47□□□□□ -0.89
NUP54-218ENST00000515460 RNF144AP50876 292 aaPredicted RBP9.47□□□□□ -0.89
NUP54-218ENST00000515460 ESF1Q9H501 851 aaKnown RBP9.47□□□□□ -0.89
NUP54-218ENST00000515460 PCDHB11Q9Y5F2 797 aa9.47□□□□□ -0.89
NUP54-218ENST00000515460 NDUFB9Q9Y6M9 179 aa9.47□□□□□ -0.89
NUP54-218ENST00000515460 EIF4G3O43432 1585 aaKnown RBP9.46□□□□□ -0.89
NUP54-218ENST00000515460 SCTRP47872 440 aa9.46□□□□□ -0.9
NUP54-218ENST00000515460 ERVK-9P63128 1117 aa9.46□□□□□ -0.9
NUP54-218ENST00000515460 CC2D2BQ6DHV5 1058 aa9.46□□□□□ -0.9
NUP54-218ENST00000515460 CUEDC1Q9NWM3 386 aaPredicted RBP9.46□□□□□ -0.9
NUP54-218ENST00000515460 ZNF330Q9Y3S2 320 aaPredicted RBP9.46□□□□□ -0.9
NUP54-218ENST00000515460 NLRP3Q96P20 1036 aa9.45□□□□□ -0.9
NUP54-218ENST00000515460 AQRO60306 1485 aaKnown RBP eCLIP9.45□□□□□ -0.9
NUP54-218ENST00000515460 GPR37L1O60883 481 aa9.44□□□□□ -0.9
NUP54-218ENST00000515460 MCCD1P59942 119 aaPredicted RBP9.44□□□□□ -0.9
NUP54-218ENST00000515460 SLC27A3Q5K4L6 730 aa9.44□□□□□ -0.9
NUP54-218ENST00000515460 CCDC125Q86Z20 511 aa9.44□□□□□ -0.9
NUP54-218ENST00000515460 SVOPQ8N4V2 548 aa9.44□□□□□ -0.9
NUP54-218ENST00000515460 WHAMMQ8TF30 809 aa9.44□□□□□ -0.9
NUP54-218ENST00000515460 ADAMTS8Q9UP79 889 aa9.44□□□□□ -0.9
NUP54-218ENST00000515460 IFT140Q96RY7 1462 aa9.43□□□□□ -0.9
NUP54-218ENST00000515460 POU4F2Q12837 409 aa9.43□□□□□ -0.9
NUP54-218ENST00000515460 ZNF385CQ66K41 422 aaPredicted RBP9.43□□□□□ -0.9
NUP54-218ENST00000515460 RIPOR1Q6ZS17 1223 aa9.43□□□□□ -0.9
NUP54-218ENST00000515460 MROH2BQ7Z745 1585 aa9.42□□□□□ -0.9
NUP54-218ENST00000515460 ZNF592Q92610 1267 aa9.42□□□□□ -0.9
NUP54-218ENST00000515460 PEG3Q9GZU2 1588 aa9.41□□□□□ -0.9
NUP54-218ENST00000515460 CYP2U1Q7Z449 544 aa9.41□□□□□ -0.9
NUP54-218ENST00000515460 GAS2L1Q99501 681 aaPredicted RBP9.41□□□□□ -0.9
NUP54-218ENST00000515460 ARHGEF10LQ9HCE6 1279 aa9.41□□□□□ -0.9
NUP54-218ENST00000515460 TSPOAP1O95153 1857 aa9.4□□□□□ -0.9
NUP54-218ENST00000515460 SLURP2P0DP57 97 aa9.4□□□□□ -0.9
NUP54-218ENST00000515460 GPC1P35052 558 aa9.4□□□□□ -0.9
NUP54-218ENST00000515460 OSBPL3Q9H4L5 887 aa9.4□□□□□ -0.9
NUP54-218ENST00000515460 RAB6BQ9NRW1 208 aa9.4□□□□□ -0.9
NUP54-218ENST00000515460 GPR25O00155 361 aa9.39□□□□□ -0.91
NUP54-218ENST00000515460 ADAMTS2O95450 1211 aa9.39□□□□□ -0.91
NUP54-218ENST00000515460 DBN1Q16643 649 aa9.39□□□□□ -0.91
NUP54-218ENST00000515460 CEP126Q9P2H0 1117 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms