RNA–Protein interactions for RNA: ENST00000515418.1

CPNE4-213, Transcript of copine 4, humanhuman

TSL 5

Gene CPNE4, Length 1,958 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-213ENST00000515418 TSPYL6Q8N831 410 aa11.85□□□□□ -0.51
CPNE4-213ENST00000515418 FRAT1Q92837 279 aaPredicted RBP11.85□□□□□ -0.51
CPNE4-213ENST00000515418 GNAT3A8MTJ3 354 aa11.84□□□□□ -0.51
CPNE4-213ENST00000515418 IL17REQ8NFR9 667 aa11.84□□□□□ -0.51
CPNE4-213ENST00000515418 CRBNQ96SW2 442 aa11.83□□□□□ -0.52
CPNE4-213ENST00000515418 CPDO75976 1380 aa11.83□□□□□ -0.52
CPNE4-213ENST00000515418 KRT24Q2M2I5 525 aa11.83□□□□□ -0.52
CPNE4-213ENST00000515418 C8orf58Q8NAV2 365 aa11.83□□□□□ -0.52
CPNE4-213ENST00000515418 CHL1O00533 1208 aa11.82□□□□□ -0.52
CPNE4-213ENST00000515418 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.82□□□□□ -0.52
CPNE4-213ENST00000515418 SSH1Q8WYL5 1049 aa11.82□□□□□ -0.52
CPNE4-213ENST00000515418 LGR6Q9HBX8 967 aa11.82□□□□□ -0.52
CPNE4-213ENST00000515418 TNNQ9UQP3 1299 aa11.82□□□□□ -0.52
CPNE4-213ENST00000515418 TCERG1O14776 1098 aaKnown RBP11.81□□□□□ -0.52
CPNE4-213ENST00000515418 TOM1O60784 492 aa11.81□□□□□ -0.52
CPNE4-213ENST00000515418 CRB1P82279 1406 aa11.81□□□□□ -0.52
CPNE4-213ENST00000515418 UBAP1LF5GYI3 381 aa11.81□□□□□ -0.52
CPNE4-213ENST00000515418 VAMP4O75379 141 aa11.81□□□□□ -0.52
CPNE4-213ENST00000515418 CANXP27824 592 aaKnown RBP11.81□□□□□ -0.52
CPNE4-213ENST00000515418 PLEKHO1Q53GL0 409 aaPredicted RBP11.81□□□□□ -0.52
CPNE4-213ENST00000515418 ZNF530Q6P9A1 599 aaPredicted RBP11.81□□□□□ -0.52
CPNE4-213ENST00000515418 CAMTA1Q9Y6Y1 1673 aa11.8□□□□□ -0.52
CPNE4-213ENST00000515418 MPRIPQ6WCQ1 1025 aa11.8□□□□□ -0.52
CPNE4-213ENST00000515418 PANK1Q8TE04 598 aa11.8□□□□□ -0.52
CPNE4-213ENST00000515418 STRN4Q9NRL3 753 aa11.8□□□□□ -0.52
CPNE4-213ENST00000515418 SMC4Q9NTJ3 1288 aa11.8□□□□□ -0.52
CPNE4-213ENST00000515418 MAP3K5Q99683 1374 aa11.8□□□□□ -0.52
CPNE4-213ENST00000515418 HTATSF1O43719 755 aaKnown RBP11.79□□□□□ -0.52
CPNE4-213ENST00000515418 RAPGEF4Q8WZA2 1011 aa11.79□□□□□ -0.52
CPNE4-213ENST00000515418 NCAPD2Q15021 1401 aa11.79□□□□□ -0.52
CPNE4-213ENST00000515418 CT47B1P0C2W7 299 aaPredicted RBP11.79□□□□□ -0.52
CPNE4-213ENST00000515418 EVA1CP58658 441 aa11.79□□□□□ -0.52
CPNE4-213ENST00000515418 TWISTNBQ3B726 338 aaPredicted RBP11.79□□□□□ -0.52
CPNE4-213ENST00000515418 AMOTQ4VCS5 1084 aa11.79□□□□□ -0.52
CPNE4-213ENST00000515418 TOM1L2Q6ZVM7 507 aa11.79□□□□□ -0.52
CPNE4-213ENST00000515418 CLUAP1Q96AJ1 413 aa11.79□□□□□ -0.52
CPNE4-213ENST00000515418 TSPYL4Q9UJ04 414 aa11.79□□□□□ -0.52
CPNE4-213ENST00000515418 ABCA3Q99758 1704 aa11.79□□□□□ -0.52
CPNE4-213ENST00000515418 RLBP1P12271 317 aa11.78□□□□□ -0.52
CPNE4-213ENST00000515418 LARP1Q6PKG0 1096 aaKnown RBP11.78□□□□□ -0.52
CPNE4-213ENST00000515418 CCDC136Q96JN2 1154 aa11.78□□□□□ -0.52
CPNE4-213ENST00000515418 NOB1Q9ULX3 412 aaKnown RBP11.78□□□□□ -0.52
CPNE4-213ENST00000515418 AKAP4Q5JQC9 854 aa11.78□□□□□ -0.52
CPNE4-213ENST00000515418 WDR17Q8IZU2 1322 aa11.77□□□□□ -0.52
CPNE4-213ENST00000515418 TATP17735 454 aaPredicted RBP11.77□□□□□ -0.53
CPNE4-213ENST00000515418 TAF7Q15545 349 aaPredicted RBP11.77□□□□□ -0.53
CPNE4-213ENST00000515418 C1orf141Q5JVX7 400 aa11.77□□□□□ -0.53
CPNE4-213ENST00000515418 BTG4Q9NY30 223 aa11.77□□□□□ -0.53
CPNE4-213ENST00000515418 USP35Q9P2H5 1018 aa11.77□□□□□ -0.53
CPNE4-213ENST00000515418 COG6Q9Y2V7 657 aa11.77□□□□□ -0.53
CPNE4-213ENST00000515418 AHDC1Q5TGY3 1603 aaPredicted RBP11.77□□□□□ -0.53
CPNE4-213ENST00000515418 NUTM2BA6NNL0 878 aaPredicted RBP11.76□□□□□ -0.53
CPNE4-213ENST00000515418 NUTM2EB1AL46 878 aaPredicted RBP11.76□□□□□ -0.53
CPNE4-213ENST00000515418 ADAMTS2O95450 1211 aa11.76□□□□□ -0.53
CPNE4-213ENST00000515418 NUTM2AQ8IVF1 878 aaPredicted RBP11.76□□□□□ -0.53
CPNE4-213ENST00000515418 PHLPP1O60346 1717 aa11.76□□□□□ -0.53
CPNE4-213ENST00000515418 LMO7Q8WWI1 1683 aa11.76□□□□□ -0.53
CPNE4-213ENST00000515418 PDE3AQ14432 1141 aa11.76□□□□□ -0.53
CPNE4-213ENST00000515418 MEGF6O75095 1541 aa11.76□□□□□ -0.53
CPNE4-213ENST00000515418 FAM208AQ9UK61 1670 aaKnown RBP11.75□□□□□ -0.53
CPNE4-213ENST00000515418 COL5A2P05997 1499 aaPredicted RBP11.75□□□□□ -0.53
CPNE4-213ENST00000515418 RNMTO43148 476 aaKnown RBP11.75□□□□□ -0.53
CPNE4-213ENST00000515418 MSH5O43196 834 aa11.75□□□□□ -0.53
CPNE4-213ENST00000515418 ALDH1L2Q3SY69 923 aa11.75□□□□□ -0.53
CPNE4-213ENST00000515418 ZKSCAN2Q63HK3 967 aa11.75□□□□□ -0.53
CPNE4-213ENST00000515418 CEMIPQ8WUJ3 1361 aa11.74□□□□□ -0.53
CPNE4-213ENST00000515418 KCNQ3O43525 872 aa11.74□□□□□ -0.53
CPNE4-213ENST00000515418 MRPL50Q8N5N7 158 aaKnown RBP11.74□□□□□ -0.53
CPNE4-213ENST00000515418 CYP27B1O15528 508 aa11.74□□□□□ -0.53
CPNE4-213ENST00000515418 TRIM27P14373 513 aa11.74□□□□□ -0.53
CPNE4-213ENST00000515418 TEFQ10587 303 aa11.74□□□□□ -0.53
CPNE4-213ENST00000515418 SPG7Q9UQ90 795 aa11.74□□□□□ -0.53
CPNE4-213ENST00000515418 ABCC6O95255 1503 aa11.73□□□□□ -0.53
CPNE4-213ENST00000515418 VIRMAQ69YN4 1812 aaKnown RBP11.73□□□□□ -0.53
CPNE4-213ENST00000515418 CERKQ8TCT0 537 aa11.73□□□□□ -0.53
CPNE4-213ENST00000515418 CARD10Q9BWT7 1032 aa11.73□□□□□ -0.53
CPNE4-213ENST00000515418 COL16A1Q07092 1604 aaPredicted RBP11.73□□□□□ -0.53
CPNE4-213ENST00000515418 PHKG2P15735 406 aa11.72□□□□□ -0.53
CPNE4-213ENST00000515418 ATF7IPQ6VMQ6 1270 aa11.72□□□□□ -0.53
CPNE4-213ENST00000515418 DZIP1LQ8IYY4 767 aaKnown RBP11.72□□□□□ -0.53
CPNE4-213ENST00000515418 NECTIN2Q92692 538 aa11.72□□□□□ -0.53
CPNE4-213ENST00000515418 ZNF428Q96B54 188 aa11.72□□□□□ -0.53
CPNE4-213ENST00000515418 BTBD11A6QL63 1104 aa11.72□□□□□ -0.53
CPNE4-213ENST00000515418 FTSJ3Q8IY81 847 aaKnown RBP11.72□□□□□ -0.53
CPNE4-213ENST00000515418 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.72□□□□□ -0.53
CPNE4-213ENST00000515418 LRRC37A3O60309 1634 aa11.72□□□□□ -0.53
CPNE4-213ENST00000515418 IFNL2Q8IZJ0 200 aa11.71□□□□□ -0.53
CPNE4-213ENST00000515418 IPO8O15397 1037 aaKnown RBP11.7□□□□□ -0.54
CPNE4-213ENST00000515418 SLC4A2P04920 1241 aa11.7□□□□□ -0.54
CPNE4-213ENST00000515418 NFATC2IPQ8NCF5 419 aa11.7□□□□□ -0.54
CPNE4-213ENST00000515418 ZCRB1Q8TBF4 217 aaKnown RBP11.7□□□□□ -0.54
CPNE4-213ENST00000515418 DDX54Q8TDD1 881 aaKnown RBP11.7□□□□□ -0.54
CPNE4-213ENST00000515418 COL22A1Q8NFW1 1626 aaPredicted RBP11.7□□□□□ -0.54
CPNE4-213ENST00000515418 IL2RBP14784 551 aa11.7□□□□□ -0.54
CPNE4-213ENST00000515418 BRPF1P55201 1214 aaPredicted RBP11.7□□□□□ -0.54
CPNE4-213ENST00000515418 TMEM57Q8N5G2 664 aa11.7□□□□□ -0.54
CPNE4-213ENST00000515418 EIF4A1P60842 406 aaKnown RBP11.69□□□□□ -0.54
CPNE4-213ENST00000515418 SLC39A6Q13433 755 aa11.69□□□□□ -0.54
CPNE4-213ENST00000515418 BABAM1Q9NWV8 329 aa11.69□□□□□ -0.54
CPNE4-213ENST00000515418 KIF16BQ96L93 1317 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms