RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 NBPF11Q86T75 865 aa12.37□□□□□ -0.43
USP53-207ENST00000510852 YTHDC1Q96MU7 727 aaKnown RBP12.37□□□□□ -0.43
USP53-207ENST00000510852 CDK19Q9BWU1 502 aa12.37□□□□□ -0.43
USP53-207ENST00000510852 CABP2Q9NPB3 220 aa12.37□□□□□ -0.43
USP53-207ENST00000510852 SMC5Q8IY18 1101 aa12.36□□□□□ -0.43
USP53-207ENST00000510852 WASLO00401 505 aaPredicted RBP12.36□□□□□ -0.43
USP53-207ENST00000510852 SRPK2P78362 688 aaKnown RBP12.36□□□□□ -0.43
USP53-207ENST00000510852 RBM33Q96EV2 1170 aaKnown RBP12.36□□□□□ -0.43
USP53-207ENST00000510852 PARNO95453 639 aaKnown RBP12.35□□□□□ -0.43
USP53-207ENST00000510852 TCF3P15923 654 aa12.35□□□□□ -0.43
USP53-207ENST00000510852 UBXN4Q92575 508 aa12.35□□□□□ -0.43
USP53-207ENST00000510852 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.35□□□□□ -0.43
USP53-207ENST00000510852 KIF4AO95239 1232 aa12.35□□□□□ -0.43
USP53-207ENST00000510852 PMM1Q92871 262 aa12.35□□□□□ -0.43
USP53-207ENST00000510852 NKTRP30414 1462 aaKnown RBP12.34□□□□□ -0.43
USP53-207ENST00000510852 CLEC4GQ6UXB4 293 aa12.34□□□□□ -0.43
USP53-207ENST00000510852 ZNF335Q9H4Z2 1342 aaPredicted RBP12.34□□□□□ -0.43
USP53-207ENST00000510852 SH3BP5O60239 455 aa12.33□□□□□ -0.43
USP53-207ENST00000510852 SKIV2LQ15477 1246 aaKnown RBP12.33□□□□□ -0.43
USP53-207ENST00000510852 CADPS2Q86UW7 1296 aa12.33□□□□□ -0.44
USP53-207ENST00000510852 RBM46Q8TBY0 533 aaKnown RBP12.33□□□□□ -0.44
USP53-207ENST00000510852 ADGRB2O60241 1585 aa12.33□□□□□ -0.44
USP53-207ENST00000510852 TRIM66O15016 1216 aa12.32□□□□□ -0.44
USP53-207ENST00000510852 SSFA2P28290 1259 aa12.32□□□□□ -0.44
USP53-207ENST00000510852 STRCP1A6NGW2 1772 aa12.32□□□□□ -0.44
USP53-207ENST00000510852 ATAD2Q6PL18 1390 aa12.32□□□□□ -0.44
USP53-207ENST00000510852 APLP1P51693 650 aa12.31□□□□□ -0.44
USP53-207ENST00000510852 TMC1Q8TDI8 760 aa12.31□□□□□ -0.44
USP53-207ENST00000510852 C8orf37Q96NL8 207 aa12.31□□□□□ -0.44
USP53-207ENST00000510852 CIZ1Q9ULV3 898 aaPredicted RBP12.31□□□□□ -0.44
USP53-207ENST00000510852 TMEM94Q12767 1356 aa12.31□□□□□ -0.44
USP53-207ENST00000510852 AXDND1Q5T1B0 1012 aaPredicted RBP12.31□□□□□ -0.44
USP53-207ENST00000510852 CASC1Q6TDU7 716 aa12.31□□□□□ -0.44
USP53-207ENST00000510852 MAF1Q9H063 256 aa12.31□□□□□ -0.44
USP53-207ENST00000510852 PANK3Q9H999 370 aa12.31□□□□□ -0.44
USP53-207ENST00000510852 ADGRL3Q9HAR2 1447 aa12.31□□□□□ -0.44
USP53-207ENST00000510852 SLC12A5Q9H2X9 1139 aa12.3□□□□□ -0.44
USP53-207ENST00000510852 MAGEC2Q9UBF1 373 aaPredicted RBP12.3□□□□□ -0.44
USP53-207ENST00000510852 HDAC5Q9UQL6 1122 aa12.3□□□□□ -0.44
USP53-207ENST00000510852 POLD1P28340 1107 aa12.3□□□□□ -0.44
USP53-207ENST00000510852 ARID4AP29374 1257 aaPredicted RBP12.3□□□□□ -0.44
USP53-207ENST00000510852 NUDT16Q96DE0 195 aaKnown RBP12.3□□□□□ -0.44
USP53-207ENST00000510852 SPOCK3Q9BQ16 436 aa12.3□□□□□ -0.44
USP53-207ENST00000510852 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.3□□□□□ -0.44
USP53-207ENST00000510852 CCDC194A0A1B0GVG4 234 aa12.29□□□□□ -0.44
USP53-207ENST00000510852 HMGB1P1B2RPK0 211 aaPredicted RBP12.29□□□□□ -0.44
USP53-207ENST00000510852 ARMCX6Q7L4S7 300 aa12.29□□□□□ -0.44
USP53-207ENST00000510852 PRR36Q9H6K5 1346 aa12.29□□□□□ -0.44
USP53-207ENST00000510852 NUTM2FA1L443 756 aa12.29□□□□□ -0.44
USP53-207ENST00000510852 NALCNQ8IZF0 1738 aa12.28□□□□□ -0.44
USP53-207ENST00000510852 NCOA3Q9Y6Q9 1424 aa12.28□□□□□ -0.44
USP53-207ENST00000510852 MYOM1P52179 1685 aa12.28□□□□□ -0.44
USP53-207ENST00000510852 RHBDL3P58872 404 aa12.28□□□□□ -0.44
USP53-207ENST00000510852 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.28□□□□□ -0.44
USP53-207ENST00000510852 CABP1Q9NZU7 370 aa12.28□□□□□ -0.44
USP53-207ENST00000510852 C19orf44Q9H6X5 657 aa12.28□□□□□ -0.44
USP53-207ENST00000510852 METTL14Q9HCE5 456 aaKnown RBP12.28□□□□□ -0.44
USP53-207ENST00000510852 CCDC61Q9Y6R9 512 aa12.28□□□□□ -0.44
USP53-207ENST00000510852 NINLQ9Y2I6 1382 aa12.28□□□□□ -0.44
USP53-207ENST00000510852 ATP7BP35670 1465 aa12.28□□□□□ -0.44
USP53-207ENST00000510852 LRRC7Q96NW7 1537 aa12.27□□□□□ -0.44
USP53-207ENST00000510852 CDC42BPGQ6DT37 1551 aa12.27□□□□□ -0.45
USP53-207ENST00000510852 EXOC5O00471 708 aa12.27□□□□□ -0.45
USP53-207ENST00000510852 EPB41L2O43491 1005 aaKnown RBP12.27□□□□□ -0.45
USP53-207ENST00000510852 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.27□□□□□ -0.456e-8■■■■■ 55.9
USP53-207ENST00000510852 PER1O15534 1290 aaPredicted RBP12.26□□□□□ -0.45
USP53-207ENST00000510852 CCDC181Q5TID7 509 aa12.26□□□□□ -0.45
USP53-207ENST00000510852 PPIP5K1Q6PFW1 1433 aa12.26□□□□□ -0.45
USP53-207ENST00000510852 ANP32CO43423 234 aa12.26□□□□□ -0.45
USP53-207ENST00000510852 NBPF20Q3BBV1 942 aa12.26□□□□□ -0.45
USP53-207ENST00000510852 DPH6Q7L8W6 267 aa12.26□□□□□ -0.45
USP53-207ENST00000510852 CARD14Q9BXL6 1004 aa12.25□□□□□ -0.45
USP53-207ENST00000510852 GABBR1Q9UBS5 961 aa12.25□□□□□ -0.45
USP53-207ENST00000510852 ANKARQ7Z5J8 1434 aa12.25□□□□□ -0.45
USP53-207ENST00000510852 ANKRD36BQ8N2N9 1353 aa12.25□□□□□ -0.45
USP53-207ENST00000510852 U2SURPO15042 1029 aaKnown RBP12.25□□□□□ -0.45
USP53-207ENST00000510852 WDR78Q5VTH9 848 aa12.24□□□□□ -0.45
USP53-207ENST00000510852 KRI1Q8N9T8 703 aaKnown RBP12.24□□□□□ -0.45
USP53-207ENST00000510852 FMN2Q9NZ56 1722 aa12.24□□□□□ -0.45
USP53-207ENST00000510852 A0A1W2PP64 1363 aa12.24□□□□□ -0.45
USP53-207ENST00000510852 USP32Q8NFA0 1604 aa12.24□□□□□ -0.45
USP53-207ENST00000510852 ATF3P18847 181 aa12.23□□□□□ -0.45
USP53-207ENST00000510852 CACTIN-AS1Q8N1I8 211 aa12.23□□□□□ -0.45
USP53-207ENST00000510852 KNSTRNQ9Y448 316 aa12.23□□□□□ -0.45
USP53-207ENST00000510852 CD163L1Q9NR16 1453 aa12.23□□□□□ -0.45
USP53-207ENST00000510852 MSH6P52701 1360 aa12.23□□□□□ -0.45
USP53-207ENST00000510852 HDGFL2Q7Z4V5 671 aaPredicted RBP12.23□□□□□ -0.45
USP53-207ENST00000510852 TSPAN18Q96SJ8 248 aa12.23□□□□□ -0.45
USP53-207ENST00000510852 DCCP43146 1447 aa12.23□□□□□ -0.45
USP53-207ENST00000510852 ZNF280DQ6N043 979 aa12.22□□□□□ -0.45
USP53-207ENST00000510852 MIER1Q8N108 512 aa12.22□□□□□ -0.45
USP53-207ENST00000510852 CXorf38Q8TB03 319 aa12.22□□□□□ -0.45
USP53-207ENST00000510852 FAN1Q9Y2M0 1017 aa12.22□□□□□ -0.45
USP53-207ENST00000510852 GET4Q7L5D6 327 aaPredicted RBP12.22□□□□□ -0.45
USP53-207ENST00000510852 LTBP4Q8N2S1 1624 aa12.22□□□□□ -0.45
USP53-207ENST00000510852 LIG1P18858 919 aa12.21□□□□□ -0.45
USP53-207ENST00000510852 CALRP27797 417 aaKnown RBP12.21□□□□□ -0.45
USP53-207ENST00000510852 PMFBP1Q8TBY8 1022 aa12.21□□□□□ -0.45
USP53-207ENST00000510852 NSD3Q9BZ95 1437 aa12.21□□□□□ -0.45
USP53-207ENST00000510852 TOPAZ1Q8N9V7 1692 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms