RNA–Protein interactions for RNA: ENST00000506767.1

TCOF1-210, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 869 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-210ENST00000506767 PKD1L3Q7Z443 1732 aa17.18■□□□□ 0.34
TCOF1-210ENST00000506767 A0A0G2JS52 829 aa17.17■□□□□ 0.34
TCOF1-210ENST00000506767 EXOC5O00471 708 aa17.17■□□□□ 0.34
TCOF1-210ENST00000506767 MYT1Q01538 1121 aa17.17■□□□□ 0.34
TCOF1-210ENST00000506767 TNS2Q63HR2 1409 aa17.17■□□□□ 0.34
TCOF1-210ENST00000506767 SHANK3Q9BYB0 1731 aa17.17■□□□□ 0.34
TCOF1-210ENST00000506767 FCHSD2O94868 740 aa17.16■□□□□ 0.34
TCOF1-210ENST00000506767 U2AF1L5P0DN76 240 aaPredicted RBP17.16■□□□□ 0.34
TCOF1-210ENST00000506767 U2AF1Q01081 240 aaKnown RBP eCLIP17.16■□□□□ 0.34
TCOF1-210ENST00000506767 RSPH6AQ9H0K4 717 aa17.16■□□□□ 0.34
TCOF1-210ENST00000506767 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.16■□□□□ 0.34
TCOF1-210ENST00000506767 KRT27Q7Z3Y8 459 aa17.15■□□□□ 0.34
TCOF1-210ENST00000506767 ZCRB1Q8TBF4 217 aaKnown RBP17.15■□□□□ 0.34
TCOF1-210ENST00000506767 MRS2Q9HD23 443 aa17.14■□□□□ 0.33
TCOF1-210ENST00000506767 CCER2I3L3R5 266 aa17.13■□□□□ 0.33
TCOF1-210ENST00000506767 PDE3BQ13370 1112 aa17.13■□□□□ 0.33
TCOF1-210ENST00000506767 MIER1Q8N108 512 aa17.13■□□□□ 0.33
TCOF1-210ENST00000506767 MARCH10Q8NA82 808 aaPredicted RBP17.13■□□□□ 0.33
TCOF1-210ENST00000506767 PNISRQ8TF01 805 aaKnown RBP17.13■□□□□ 0.33
TCOF1-210ENST00000506767 PRKAR2BP31323 418 aa17.12■□□□□ 0.33
TCOF1-210ENST00000506767 AMOTQ4VCS5 1084 aa17.12■□□□□ 0.33
TCOF1-210ENST00000506767 PLEKHO1Q53GL0 409 aaPredicted RBP17.12■□□□□ 0.33
TCOF1-210ENST00000506767 PLEKHF1Q96S99 279 aa17.12■□□□□ 0.33
TCOF1-210ENST00000506767 SPG7Q9UQ90 795 aa17.12■□□□□ 0.33
TCOF1-210ENST00000506767 WDR43Q15061 677 aaKnown RBP eCLIP17.11■□□□□ 0.33
TCOF1-210ENST00000506767 ADAMTS8Q9UP79 889 aa17.11■□□□□ 0.33
TCOF1-210ENST00000506767 BCL9O00512 1426 aa17.11■□□□□ 0.33
TCOF1-210ENST00000506767 CYP27B1O15528 508 aa17.1■□□□□ 0.33
TCOF1-210ENST00000506767 PHACTR3Q96KR7 559 aa17.1■□□□□ 0.33
TCOF1-210ENST00000506767 PCDH11XQ9BZA7 1347 aa17.1■□□□□ 0.33
TCOF1-210ENST00000506767 PCDH11YQ9BZA8 1340 aa17.1■□□□□ 0.33
TCOF1-210ENST00000506767 FAM182BQ5T319 152 aa17.09■□□□□ 0.33
TCOF1-210ENST00000506767 DDX54Q8TDD1 881 aaKnown RBP17.09■□□□□ 0.33
TCOF1-210ENST00000506767 PNNQ9H307 717 aaKnown RBP17.09■□□□□ 0.33
TCOF1-210ENST00000506767 PHKG2P15735 406 aa17.08■□□□□ 0.32
TCOF1-210ENST00000506767 NKX1-1Q15270 411 aaPredicted RBP17.08■□□□□ 0.32
TCOF1-210ENST00000506767 MTHFSDQ2M296 383 aaKnown RBP17.08■□□□□ 0.32
TCOF1-210ENST00000506767 FAM196AQ6ZSG2 479 aa17.07■□□□□ 0.32
TCOF1-210ENST00000506767 IFNL2Q8IZJ0 200 aa17.07■□□□□ 0.32
TCOF1-210ENST00000506767 ZNF530Q6P9A1 599 aaPredicted RBP17.06■□□□□ 0.32
TCOF1-210ENST00000506767 SBF2Q86WG5 1849 aa17.05■□□□□ 0.32
TCOF1-210ENST00000506767 GAS2L2Q8NHY3 880 aa17.05■□□□□ 0.32
TCOF1-210ENST00000506767 AKAP4Q5JQC9 854 aa17.04■□□□□ 0.32
TCOF1-210ENST00000506767 RUNDC1Q96C34 613 aa17.04■□□□□ 0.32
TCOF1-210ENST00000506767 NEFMP07197 916 aa17.03■□□□□ 0.32
TCOF1-210ENST00000506767 C1orf141Q5JVX7 400 aa17.03■□□□□ 0.32
TCOF1-210ENST00000506767 ADAMTS7Q9UKP4 1686 aa17.03■□□□□ 0.32
TCOF1-210ENST00000506767 TOGARAM1Q9Y4F4 1720 aa17.02■□□□□ 0.32
TCOF1-210ENST00000506767 HSP90AB1P08238 724 aaKnown RBP17.02■□□□□ 0.32
TCOF1-210ENST00000506767 CCDC146Q8IYE0 955 aa17.02■□□□□ 0.32
TCOF1-210ENST00000506767 DOT1LQ8TEK3 1739 aa17.01■□□□□ 0.31
TCOF1-210ENST00000506767 MAPK8IP3Q9UPT6 1336 aa17.01■□□□□ 0.31
TCOF1-210ENST00000506767 NFE2L2Q16236 605 aa17.01■□□□□ 0.31
TCOF1-210ENST00000506767 DCAF5Q96JK2 942 aa17.01■□□□□ 0.31
TCOF1-210ENST00000506767 KDM6AO15550 1401 aaPredicted RBP17.01■□□□□ 0.31
TCOF1-210ENST00000506767 DLG5Q8TDM6 1919 aa17.01■□□□□ 0.31
TCOF1-210ENST00000506767 NHSQ6T4R5 1651 aa17.01■□□□□ 0.31
TCOF1-210ENST00000506767 SCN11AQ9UI33 1791 aa17■□□□□ 0.31
TCOF1-210ENST00000506767 FAM9BQ8IZU0 186 aa17■□□□□ 0.31
TCOF1-210ENST00000506767 VIRMAQ69YN4 1812 aaKnown RBP17■□□□□ 0.31
TCOF1-210ENST00000506767 MAP3K5Q99683 1374 aa17■□□□□ 0.31
TCOF1-210ENST00000506767 GNAT3A8MTJ3 354 aa16.99■□□□□ 0.31
TCOF1-210ENST00000506767 TMPOP42166 694 aaKnown RBP16.99■□□□□ 0.31
TCOF1-210ENST00000506767 MPRIPQ6WCQ1 1025 aa16.99■□□□□ 0.31
TCOF1-210ENST00000506767 ITGB4P16144 1822 aa16.98■□□□□ 0.31
TCOF1-210ENST00000506767 ERVV-2B6SEH9 535 aa16.98■□□□□ 0.31
TCOF1-210ENST00000506767 KCNQ2O43526 872 aa16.98■□□□□ 0.31
TCOF1-210ENST00000506767 HTATSF1O43719 755 aaKnown RBP16.98■□□□□ 0.31
TCOF1-210ENST00000506767 ACSBG1Q96GR2 724 aa16.98■□□□□ 0.31
TCOF1-210ENST00000506767 BCL11BQ9C0K0 894 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-210ENST00000506767 LGR6Q9HBX8 967 aa16.98■□□□□ 0.31
TCOF1-210ENST00000506767 TNS1Q9HBL0 1735 aaKnown RBP16.98■□□□□ 0.31
TCOF1-210ENST00000506767 RNMTO43148 476 aaKnown RBP16.97■□□□□ 0.31
TCOF1-210ENST00000506767 TRIM37O94972 964 aa16.97■□□□□ 0.31
TCOF1-210ENST00000506767 PRIM1P49642 420 aaKnown RBP16.97■□□□□ 0.31
TCOF1-210ENST00000506767 PTF1AQ7RTS3 328 aa16.97■□□□□ 0.31
TCOF1-210ENST00000506767 IL17REQ8NFR9 667 aa16.97■□□□□ 0.31
TCOF1-210ENST00000506767 CEMIPQ8WUJ3 1361 aa16.97■□□□□ 0.31
TCOF1-210ENST00000506767 APAF1O14727 1248 aa16.96■□□□□ 0.31
TCOF1-210ENST00000506767 CCDC125Q86Z20 511 aa16.96■□□□□ 0.31
TCOF1-210ENST00000506767 MRC1P22897 1456 aa16.95■□□□□ 0.3
TCOF1-210ENST00000506767 EP400Q96L91 3159 aa16.95■□□□□ 0.3
TCOF1-210ENST00000506767 RIPK4P57078 832 aa16.95■□□□□ 0.3
TCOF1-210ENST00000506767 BTAF1O14981 1849 aa16.94■□□□□ 0.3
TCOF1-210ENST00000506767 NCBP3Q53F19 620 aaKnown RBP16.94■□□□□ 0.3
TCOF1-210ENST00000506767 RRP7AQ9Y3A4 280 aaKnown RBP16.94■□□□□ 0.3
TCOF1-210ENST00000506767 SIPA1L3O60292 1781 aaPredicted RBP16.93■□□□□ 0.3
TCOF1-210ENST00000506767 PIGBQ92521 554 aa16.93■□□□□ 0.3
TCOF1-210ENST00000506767 RTF1Q92541 710 aaKnown RBP16.93■□□□□ 0.3
TCOF1-210ENST00000506767 SLC52A2Q9HAB3 445 aa16.93■□□□□ 0.3
TCOF1-210ENST00000506767 TRIM35Q9UPQ4 493 aa16.93■□□□□ 0.3
TCOF1-210ENST00000506767 KAT6BQ8WYB5 2073 aa16.93■□□□□ 0.3
TCOF1-210ENST00000506767 CABP4P57796 275 aa16.92■□□□□ 0.3
TCOF1-210ENST00000506767 SF3B2Q13435 895 aaKnown RBP16.92■□□□□ 0.3
TCOF1-210ENST00000506767 DCTN1Q14203 1278 aa16.92■□□□□ 0.3
TCOF1-210ENST00000506767 MCM10Q7L590 875 aa16.92■□□□□ 0.3
TCOF1-210ENST00000506767 DEFB132Q7Z7B7 95 aa16.92■□□□□ 0.3
TCOF1-210ENST00000506767 NFATC2IPQ8NCF5 419 aa16.92■□□□□ 0.3
TCOF1-210ENST00000506767 SYTL4Q96C24 671 aaPredicted RBP16.92■□□□□ 0.3
TCOF1-210ENST00000506767 TMOD3Q9NYL9 352 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 152.1 ms