RNA–Protein interactions for RNA: ENST00000496910.1

EXOSC3-208, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 217 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-208ENST00000496910 PPP1R26Q5T8A7 1209 aaPredicted RBP6.18□□□□□ -1.42
EXOSC3-208ENST00000496910 CCDC116Q8IYX3 515 aa6.18□□□□□ -1.42
EXOSC3-208ENST00000496910 DEPDC4Q8N2C3 294 aa6.18□□□□□ -1.42
EXOSC3-208ENST00000496910 ZNF784Q8NCA9 323 aaPredicted RBP6.18□□□□□ -1.42
EXOSC3-208ENST00000496910 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.17□□□□□ -1.42
EXOSC3-208ENST00000496910 LMOD1P29536 600 aaPredicted RBP6.17□□□□□ -1.42
EXOSC3-208ENST00000496910 RNF20Q5VTR2 975 aa6.17□□□□□ -1.42
EXOSC3-208ENST00000496910 CCDC125Q86Z20 511 aa6.17□□□□□ -1.42
EXOSC3-208ENST00000496910 CYP4X1Q8N118 509 aa6.17□□□□□ -1.42
EXOSC3-208ENST00000496910 KDF1Q8NAX2 398 aaPredicted RBP6.17□□□□□ -1.42
EXOSC3-208ENST00000496910 HPS1Q92902 700 aa6.17□□□□□ -1.42
EXOSC3-208ENST00000496910 PDZRN3Q9UPQ7 1066 aa6.17□□□□□ -1.42
EXOSC3-208ENST00000496910 DOLKQ9UPQ8 538 aa6.17□□□□□ -1.42
EXOSC3-208ENST00000496910 PCDHB11Q9Y5F2 797 aa6.17□□□□□ -1.42
EXOSC3-208ENST00000496910 KIF21AQ7Z4S6 1674 aa6.17□□□□□ -1.42
EXOSC3-208ENST00000496910 LZTS3O60299 673 aaPredicted RBP6.16□□□□□ -1.42
EXOSC3-208ENST00000496910 TIMP2P16035 220 aa6.16□□□□□ -1.42
EXOSC3-208ENST00000496910 ADD1P35611 737 aaKnown RBP6.16□□□□□ -1.42
EXOSC3-208ENST00000496910 RAB15P59190 212 aa6.16□□□□□ -1.42
EXOSC3-208ENST00000496910 PBXIP1Q96AQ6 731 aa6.16□□□□□ -1.42
EXOSC3-208ENST00000496910 ITPKCQ96DU7 683 aa6.16□□□□□ -1.42
EXOSC3-208ENST00000496910 OSBPL3Q9H4L5 887 aa6.16□□□□□ -1.42
EXOSC3-208ENST00000496910 PCDHGA11Q9Y5H2 935 aa6.16□□□□□ -1.42
EXOSC3-208ENST00000496910 TTC24A2A3L6 582 aaPredicted RBP6.15□□□□□ -1.42
EXOSC3-208ENST00000496910 ZBTB7BO15156 539 aaPredicted RBP6.15□□□□□ -1.42
EXOSC3-208ENST00000496910 AVPP01185 164 aa6.15□□□□□ -1.42
EXOSC3-208ENST00000496910 RFX1P22670 979 aa6.15□□□□□ -1.42
EXOSC3-208ENST00000496910 CLDN10P78369 228 aa6.15□□□□□ -1.42
EXOSC3-208ENST00000496910 KIAA1024Q9UPX6 916 aa6.15□□□□□ -1.42
EXOSC3-208ENST00000496910 DHX9Q08211 1270 aaKnown RBP6.14□□□□□ -1.43
EXOSC3-208ENST00000496910 CRTC2Q53ET0 693 aaPredicted RBP6.14□□□□□ -1.43
EXOSC3-208ENST00000496910 Q6ZVU0 165 aa6.14□□□□□ -1.43
EXOSC3-208ENST00000496910 ZFAND3Q9H8U3 227 aa6.14□□□□□ -1.43
EXOSC3-208ENST00000496910 CYLDQ9NQC7 956 aa6.14□□□□□ -1.43
EXOSC3-208ENST00000496910 MKRN1Q9UHC7 482 aaKnown RBP6.14□□□□□ -1.43
EXOSC3-208ENST00000496910 ZMIZ1Q9ULJ6 1067 aa6.14□□□□□ -1.43
EXOSC3-208ENST00000496910 WASF2Q9Y6W5 498 aa6.14□□□□□ -1.43
EXOSC3-208ENST00000496910 PPP1R15AO75807 674 aaPredicted RBP6.13□□□□□ -1.43
EXOSC3-208ENST00000496910 ATG7O95352 703 aa6.13□□□□□ -1.43
EXOSC3-208ENST00000496910 PTK7Q13308 1070 aa6.13□□□□□ -1.43
EXOSC3-208ENST00000496910 EML3Q32P44 896 aa6.13□□□□□ -1.43
EXOSC3-208ENST00000496910 OXLD1Q5BKU9 147 aa6.13□□□□□ -1.43
EXOSC3-208ENST00000496910 CC2D2BQ6DHV5 1058 aa6.13□□□□□ -1.43
EXOSC3-208ENST00000496910 EMILIN1Q9Y6C2 1016 aa6.13□□□□□ -1.43
EXOSC3-208ENST00000496910 FAM196BA6NMK8 535 aa6.12□□□□□ -1.43
EXOSC3-208ENST00000496910 NRG2O14511 850 aaPredicted RBP6.12□□□□□ -1.43
EXOSC3-208ENST00000496910 LCE2BO14633 110 aa6.12□□□□□ -1.43
EXOSC3-208ENST00000496910 ZIC2O95409 532 aaPredicted RBP6.12□□□□□ -1.43
EXOSC3-208ENST00000496910 STAU1O95793 577 aaKnown RBP6.12□□□□□ -1.43
EXOSC3-208ENST00000496910 SCNN1DP51172 638 aa6.12□□□□□ -1.43
EXOSC3-208ENST00000496910 CBLBQ13191 982 aa6.12□□□□□ -1.43
EXOSC3-208ENST00000496910 ELOAQ14241 798 aaKnown RBP6.12□□□□□ -1.43
EXOSC3-208ENST00000496910 RSF1Q96T23 1441 aaPredicted RBP6.12□□□□□ -1.43
EXOSC3-208ENST00000496910 USP17L15C9J2P7 530 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 USP17L10C9JJH3 530 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 USP17L13C9JLJ4 530 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 USP17L12C9JPN9 530 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 USP17L11C9JVI0 530 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 USP17L21D6R901 530 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 USP17L18D6R9N7 530 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 USP17L22D6RA61 530 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 USP17L17D6RBQ6 530 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 USP17L19D6RCP7 530 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 USP17L20D6RJB6 530 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 ATP5J2-PTCD1G3V325 749 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 WDR4P57081 412 aaKnown RBP6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 GTF2IP78347 998 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 MYT1Q01538 1121 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 USP17L24Q0WX57 530 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 USP4Q13107 963 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 CDCA8Q53HL2 280 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 SIX5Q8N196 739 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 CRIPAKQ8N1N5 446 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 MEIOBQ8N635 442 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 VRTNQ9H8Y1 702 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 NOD1Q9Y239 953 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 HRH3Q9Y5N1 445 aa6.11□□□□□ -1.43
EXOSC3-208ENST00000496910 TMEM88BA6NKF7 163 aa6.1□□□□□ -1.43
EXOSC3-208ENST00000496910 TMEM229AB2RXF0 380 aa6.1□□□□□ -1.43
EXOSC3-208ENST00000496910 GFRA3O60609 400 aa6.1□□□□□ -1.43
EXOSC3-208ENST00000496910 ADH1AP07327 375 aa6.1□□□□□ -1.43
EXOSC3-208ENST00000496910 SMCPP49901 116 aaPredicted RBP6.1□□□□□ -1.43
EXOSC3-208ENST00000496910 FAM69CQ0P6D2 419 aa6.1□□□□□ -1.43
EXOSC3-208ENST00000496910 OGFOD1Q8N543 542 aa6.1□□□□□ -1.43
EXOSC3-208ENST00000496910 PGPEP1Q9NXJ5 209 aa6.1□□□□□ -1.43
EXOSC3-208ENST00000496910 SLAIN2Q9P270 581 aa6.1□□□□□ -1.43
EXOSC3-208ENST00000496910 CCDC9Q9Y3X0 531 aaKnown RBP6.1□□□□□ -1.43
EXOSC3-208ENST00000496910 FAM187AA6NFU0 413 aa6.09□□□□□ -1.43
EXOSC3-208ENST00000496910 WASLO00401 505 aaPredicted RBP6.09□□□□□ -1.43
EXOSC3-208ENST00000496910 DGAT1O75907 488 aa6.09□□□□□ -1.43
EXOSC3-208ENST00000496910 LARGE2Q8N3Y3 721 aa6.09□□□□□ -1.43
EXOSC3-208ENST00000496910 STK32AQ8WU08 396 aa6.09□□□□□ -1.43
EXOSC3-208ENST00000496910 DNAAF2Q9NVR5 837 aaKnown RBP6.09□□□□□ -1.43
EXOSC3-208ENST00000496910 RASA1P20936 1047 aa6.08□□□□□ -1.44
EXOSC3-208ENST00000496910 TRIM50Q86XT4 487 aa6.08□□□□□ -1.44
EXOSC3-208ENST00000496910 RETREG2Q8NC44 543 aa6.08□□□□□ -1.44
EXOSC3-208ENST00000496910 AGBL1Q96MI9 1066 aa6.08□□□□□ -1.44
EXOSC3-208ENST00000496910 ETNK1Q9HBU6 452 aa6.08□□□□□ -1.44
EXOSC3-208ENST00000496910 MYCP01106 439 aaPredicted RBP6.07□□□□□ -1.44
EXOSC3-208ENST00000496910 IL2RAP01589 272 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms