RNA–Protein interactions for RNA: ENST00000496910.1

EXOSC3-208, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 217 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-208ENST00000496910 AEBP2Q6ZN18 517 aaPredicted RBP16.29■□□□□ 0.2
EXOSC3-208ENST00000496910 CHIC1Q5VXU3 224 aa15.98■□□□□ 0.15
EXOSC3-208ENST00000496910 PHF23Q9BUL5 403 aaPredicted RBP14.14□□□□□ -0.15
EXOSC3-208ENST00000496910 SENP3Q9H4L4 574 aaPredicted RBP13.67□□□□□ -0.22
EXOSC3-208ENST00000496910 PLPPR3Q6T4P5 718 aa12.96□□□□□ -0.33
EXOSC3-208ENST00000496910 FOXD1Q16676 465 aa12.74□□□□□ -0.37
EXOSC3-208ENST00000496910 PPP6R1Q9UPN7 881 aa12.41□□□□□ -0.42
EXOSC3-208ENST00000496910 ADRA2BP18089 450 aa12.35□□□□□ -0.43
EXOSC3-208ENST00000496910 PIAS4Q8N2W9 510 aaPredicted RBP11.97□□□□□ -0.49
EXOSC3-208ENST00000496910 MSH5O43196 834 aa11.6□□□□□ -0.55
EXOSC3-208ENST00000496910 PPP4R3CPQ6ZMV5 832 aa11.47□□□□□ -0.57
EXOSC3-208ENST00000496910 KCNA4P22459 653 aa11.4□□□□□ -0.58
EXOSC3-208ENST00000496910 MAPK8IP2Q13387 824 aaPredicted RBP11.18□□□□□ -0.62
EXOSC3-208ENST00000496910 SCAF1Q9H7N4 1312 aaKnown RBP11.16□□□□□ -0.62
EXOSC3-208ENST00000496910 NCBP3Q53F19 620 aaKnown RBP11.11□□□□□ -0.63
EXOSC3-208ENST00000496910 CNKSR2Q8WXI2 1034 aa11.1□□□□□ -0.63
EXOSC3-208ENST00000496910 NPM3O75607 178 aaKnown RBP11.08□□□□□ -0.64
EXOSC3-208ENST00000496910 DMRT2Q9Y5R5 561 aa10.99□□□□□ -0.65
EXOSC3-208ENST00000496910 RNF216Q9NWF9 866 aaPredicted RBP10.87□□□□□ -0.67
EXOSC3-208ENST00000496910 HOXD11P31277 338 aaPredicted RBP10.84□□□□□ -0.67
EXOSC3-208ENST00000496910 DNAJC5BQ9UF47 199 aa10.82□□□□□ -0.68
EXOSC3-208ENST00000496910 SLC4A1APQ9BWU0 796 aaKnown RBP10.81□□□□□ -0.68
EXOSC3-208ENST00000496910 EHMT2Q96KQ7 1210 aa10.65□□□□□ -0.7
EXOSC3-208ENST00000496910 ZBTB22O15209 634 aa10.57□□□□□ -0.72
EXOSC3-208ENST00000496910 CSRNP3Q8WYN3 585 aa10.57□□□□□ -0.72
EXOSC3-208ENST00000496910 SLC4A2P04920 1241 aa10.48□□□□□ -0.73
EXOSC3-208ENST00000496910 FOXD4L1Q9NU39 408 aa10.4□□□□□ -0.74
EXOSC3-208ENST00000496910 POTEDQ86YR6 584 aa10.39□□□□□ -0.75
EXOSC3-208ENST00000496910 DCAF8L1A6NGE4 600 aa10.33□□□□□ -0.76
EXOSC3-208ENST00000496910 MYCNP04198 464 aaPredicted RBP10.18□□□□□ -0.78
EXOSC3-208ENST00000496910 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.18□□□□□ -0.78
EXOSC3-208ENST00000496910 U3KPZ7 1027 aaPredicted RBP10.17□□□□□ -0.78
EXOSC3-208ENST00000496910 RNF39Q9H2S5 420 aa10.04□□□□□ -0.8
EXOSC3-208ENST00000496910 ATXN8OSP0DMR3 200 aa10.03□□□□□ -0.8
EXOSC3-208ENST00000496910 ATF5Q9Y2D1 282 aaPredicted RBP10□□□□□ -0.81
EXOSC3-208ENST00000496910 SAMD1Q6SPF0 538 aaPredicted RBP9.95□□□□□ -0.82
EXOSC3-208ENST00000496910 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.94□□□□□ -0.82
EXOSC3-208ENST00000496910 HNRNPUL2Q1KMD3 747 aaKnown RBP9.94□□□□□ -0.82
EXOSC3-208ENST00000496910 C1QBPQ07021 282 aaKnown RBP9.86□□□□□ -0.83
EXOSC3-208ENST00000496910 SPINK5Q9NQ38 1064 aaPredicted RBP9.83□□□□□ -0.84
EXOSC3-208ENST00000496910 APLP2Q06481 763 aa9.76□□□□□ -0.85
EXOSC3-208ENST00000496910 ZNF219Q9P2Y4 722 aaPredicted RBP9.74□□□□□ -0.85
EXOSC3-208ENST00000496910 CAPN15O75808 1086 aa9.67□□□□□ -0.86
EXOSC3-208ENST00000496910 TRHP20396 242 aaPredicted RBP9.66□□□□□ -0.86
EXOSC3-208ENST00000496910 DSG3P32926 999 aa9.59□□□□□ -0.87
EXOSC3-208ENST00000496910 MKRN4PQ13434 485 aaPredicted RBP9.58□□□□□ -0.88
EXOSC3-208ENST00000496910 POLA2Q14181 598 aa9.58□□□□□ -0.88
EXOSC3-208ENST00000496910 CACNB1Q02641 598 aaPredicted RBP9.55□□□□□ -0.88
EXOSC3-208ENST00000496910 ABCB7O75027 752 aa9.54□□□□□ -0.88
EXOSC3-208ENST00000496910 FKBP8Q14318 412 aa9.45□□□□□ -0.9
EXOSC3-208ENST00000496910 FBLN2P98095 1184 aa9.39□□□□□ -0.91
EXOSC3-208ENST00000496910 ZBTB12Q9Y330 459 aaPredicted RBP9.38□□□□□ -0.91
EXOSC3-208ENST00000496910 PROM2Q8N271 834 aa9.32□□□□□ -0.92
EXOSC3-208ENST00000496910 SPDYE4A6NLX3 237 aa9.31□□□□□ -0.92
EXOSC3-208ENST00000496910 OSCARQ8IYS5 282 aa9.28□□□□□ -0.92
EXOSC3-208ENST00000496910 SSUH2Q9Y2M2 353 aa9.21□□□□□ -0.94
EXOSC3-208ENST00000496910 SPDYE2BA6NHP3 402 aa9.19□□□□□ -0.94
EXOSC3-208ENST00000496910 SPDYE6P0CI01 402 aa9.19□□□□□ -0.94
EXOSC3-208ENST00000496910 SPDYE2Q495Y8 402 aa9.19□□□□□ -0.94
EXOSC3-208ENST00000496910 DNAJC5Q9H3Z4 198 aa9.15□□□□□ -0.94
EXOSC3-208ENST00000496910 ZNF692Q9BU19 519 aaPredicted RBP9.13□□□□□ -0.95
EXOSC3-208ENST00000496910 PABPN1Q86U42 306 aaKnown RBP eCLIP9.06□□□□□ -0.96
EXOSC3-208ENST00000496910 RBM42Q9BTD8 480 aaKnown RBP9.02□□□□□ -0.97
EXOSC3-208ENST00000496910 FBXO3Q9UK99 471 aa9.02□□□□□ -0.97
EXOSC3-208ENST00000496910 AKT1S1Q96B36 256 aa8.99□□□□□ -0.97
EXOSC3-208ENST00000496910 VASPP50552 380 aaPredicted RBP8.98□□□□□ -0.97
EXOSC3-208ENST00000496910 REM2Q8IYK8 340 aaPredicted RBP8.93□□□□□ -0.98
EXOSC3-208ENST00000496910 IFNLR1Q8IU57 520 aaPredicted RBP8.91□□□□□ -0.98
EXOSC3-208ENST00000496910 RTN4Q9NQC3 1192 aaKnown RBP8.9□□□□□ -0.98
EXOSC3-208ENST00000496910 STAG3Q9UJ98 1225 aa8.89□□□□□ -0.99
EXOSC3-208ENST00000496910 SPDYE1Q8NFV5 336 aaPredicted RBP8.86□□□□□ -0.99
EXOSC3-208ENST00000496910 PITPNM1O00562 1244 aa8.85□□□□□ -0.99
EXOSC3-208ENST00000496910 AMER1Q5JTC6 1135 aaPredicted RBP8.84□□□□□ -0.99
EXOSC3-208ENST00000496910 CREBZFQ9NS37 354 aa8.77□□□□□ -1.01
EXOSC3-208ENST00000496910 CLEC11AQ9Y240 323 aa8.76□□□□□ -1.01
EXOSC3-208ENST00000496910 MNX1P50219 401 aaPredicted RBP8.75□□□□□ -1.01
EXOSC3-208ENST00000496910 MIER1Q8N108 512 aa8.75□□□□□ -1.01
EXOSC3-208ENST00000496910 PLCD3Q8N3E9 789 aa8.73□□□□□ -1.01
EXOSC3-208ENST00000496910 PRR29P0C7W0 189 aa8.72□□□□□ -1.01
EXOSC3-208ENST00000496910 SPOCK2Q92563 424 aa8.7□□□□□ -1.02
EXOSC3-208ENST00000496910 PKD2Q13563 968 aa8.69□□□□□ -1.02
EXOSC3-208ENST00000496910 FXR2P51116 673 aaKnown RBP eCLIP8.67□□□□□ -1.02
EXOSC3-208ENST00000496910 KLHL34Q8N239 644 aa8.66□□□□□ -1.02
EXOSC3-208ENST00000496910 NUBP1P53384 320 aa8.65□□□□□ -1.02
EXOSC3-208ENST00000496910 CHRDL2Q6WN34 429 aa8.65□□□□□ -1.02
EXOSC3-208ENST00000496910 CHADLQ6NUI6 762 aa8.62□□□□□ -1.03
EXOSC3-208ENST00000496910 ZBTB47Q9UFB7 747 aaPredicted RBP8.62□□□□□ -1.03
EXOSC3-208ENST00000496910 PLEKHG5O94827 1062 aa8.6□□□□□ -1.03
EXOSC3-208ENST00000496910 PIP4P2Q8N4L2 257 aa8.6□□□□□ -1.03
EXOSC3-208ENST00000496910 PRKAR2AP13861 404 aaKnown RBP8.57□□□□□ -1.04
EXOSC3-208ENST00000496910 RASEFQ8IZ41 740 aa8.56□□□□□ -1.04
EXOSC3-208ENST00000496910 FARP1Q9Y4F1 1045 aaPredicted RBP8.56□□□□□ -1.04
EXOSC3-208ENST00000496910 RGL2O15211 777 aa8.49□□□□□ -1.05
EXOSC3-208ENST00000496910 ECM2O94769 699 aaPredicted RBP8.48□□□□□ -1.05
EXOSC3-208ENST00000496910 NPM1P06748 294 aaKnown RBP eCLIP8.48□□□□□ -1.05
EXOSC3-208ENST00000496910 CIZ1Q9ULV3 898 aaPredicted RBP8.48□□□□□ -1.05
EXOSC3-208ENST00000496910 GSE1Q14687 1217 aa8.47□□□□□ -1.05
EXOSC3-208ENST00000496910 RNF25Q96BH1 459 aaPredicted RBP8.47□□□□□ -1.05
EXOSC3-208ENST00000496910 FAM212AQ96EL1 285 aa8.45□□□□□ -1.06
EXOSC3-208ENST00000496910 TRIM41Q8WV44 630 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms