RNA–Protein interactions for RNA: ENST00000496468.1

TSSC4-210, Transcript of tumor suppressing subtransferable candidate 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene TSSC4, Length 912 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSSC4-210ENST00000496468 RXRBP28702 533 aa24.44■■□□□ 1.5
TSSC4-210ENST00000496468 TATP17735 454 aaPredicted RBP24.43■■□□□ 1.5
TSSC4-210ENST00000496468 SHANK3Q9BYB0 1731 aa24.43■■□□□ 1.5
TSSC4-210ENST00000496468 RGS12O14924 1447 aa24.43■■□□□ 1.5
TSSC4-210ENST00000496468 RSPH6AQ9H0K4 717 aa24.42■■□□□ 1.5
TSSC4-210ENST00000496468 PRKAR2BP31323 418 aa24.4■■□□□ 1.5
TSSC4-210ENST00000496468 PNISRQ8TF01 805 aaKnown RBP24.4■■□□□ 1.5
TSSC4-210ENST00000496468 FCHSD2O94868 740 aa24.39■■□□□ 1.49
TSSC4-210ENST00000496468 PNNQ9H307 717 aaKnown RBP24.37■■□□□ 1.49
TSSC4-210ENST00000496468 ADAMTS8Q9UP79 889 aa24.37■■□□□ 1.49
TSSC4-210ENST00000496468 BRWD3Q6RI45 1802 aa24.37■■□□□ 1.49
TSSC4-210ENST00000496468 ONECUT3O60422 494 aaPredicted RBP24.36■■□□□ 1.49
TSSC4-210ENST00000496468 DDB1Q16531 1140 aa24.36■■□□□ 1.49
TSSC4-210ENST00000496468 SEPT12Q8IYM1 358 aa24.36■■□□□ 1.49
TSSC4-210ENST00000496468 MAPK8IP3Q9UPT6 1336 aa24.35■■□□□ 1.49
TSSC4-210ENST00000496468 NEFMP07197 916 aa24.35■■□□□ 1.49
TSSC4-210ENST00000496468 FAM9BQ8IZU0 186 aa24.35■■□□□ 1.49
TSSC4-210ENST00000496468 SPG7Q9UQ90 795 aa24.34■■□□□ 1.49
TSSC4-210ENST00000496468 PCDH11XQ9BZA7 1347 aa24.34■■□□□ 1.49
TSSC4-210ENST00000496468 PCDH11YQ9BZA8 1340 aa24.34■■□□□ 1.49
TSSC4-210ENST00000496468 AMOTQ4VCS5 1084 aa24.33■■□□□ 1.49
TSSC4-210ENST00000496468 PLEKHO1Q53GL0 409 aaPredicted RBP24.33■■□□□ 1.49
TSSC4-210ENST00000496468 ZCRB1Q8TBF4 217 aaKnown RBP24.33■■□□□ 1.49
TSSC4-210ENST00000496468 CCDC146Q8IYE0 955 aa24.32■■□□□ 1.48
TSSC4-210ENST00000496468 PLEKHF1Q96S99 279 aa24.32■■□□□ 1.48
TSSC4-210ENST00000496468 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.32■■□□□ 1.48
TSSC4-210ENST00000496468 EXOC5O00471 708 aa24.31■■□□□ 1.48
TSSC4-210ENST00000496468 ZNF530Q6P9A1 599 aaPredicted RBP24.3■■□□□ 1.48
TSSC4-210ENST00000496468 RUNDC1Q96C34 613 aa24.3■■□□□ 1.48
TSSC4-210ENST00000496468 GAS2L2Q8NHY3 880 aa24.29■■□□□ 1.48
TSSC4-210ENST00000496468 PDE3BQ13370 1112 aa24.28■■□□□ 1.48
TSSC4-210ENST00000496468 PHACTR3Q96KR7 559 aa24.28■■□□□ 1.48
TSSC4-210ENST00000496468 MTHFSDQ2M296 383 aaKnown RBP24.27■■□□□ 1.48
TSSC4-210ENST00000496468 DDX54Q8TDD1 881 aaKnown RBP24.27■■□□□ 1.48
TSSC4-210ENST00000496468 DLG5Q8TDM6 1919 aa24.26■■□□□ 1.47
TSSC4-210ENST00000496468 C1orf141Q5JVX7 400 aa24.26■■□□□ 1.47
TSSC4-210ENST00000496468 KRT27Q7Z3Y8 459 aa24.26■■□□□ 1.47
TSSC4-210ENST00000496468 DOT1LQ8TEK3 1739 aa24.26■■□□□ 1.47
TSSC4-210ENST00000496468 MAP3K5Q99683 1374 aa24.25■■□□□ 1.47
TSSC4-210ENST00000496468 TOGARAM1Q9Y4F4 1720 aa24.24■■□□□ 1.47
TSSC4-210ENST00000496468 CYP27B1O15528 508 aa24.24■■□□□ 1.47
TSSC4-210ENST00000496468 PHKG2P15735 406 aa24.24■■□□□ 1.47
TSSC4-210ENST00000496468 IFNL2Q8IZJ0 200 aa24.24■■□□□ 1.47
TSSC4-210ENST00000496468 VIRMAQ69YN4 1812 aaKnown RBP24.24■■□□□ 1.47
TSSC4-210ENST00000496468 NFE2L2Q16236 605 aa24.23■■□□□ 1.47
TSSC4-210ENST00000496468 MARCH10Q8NA82 808 aaPredicted RBP24.23■■□□□ 1.47
TSSC4-210ENST00000496468 ADAMTS7Q9UKP4 1686 aa24.22■■□□□ 1.47
TSSC4-210ENST00000496468 AKAP4Q5JQC9 854 aa24.22■■□□□ 1.47
TSSC4-210ENST00000496468 SCN11AQ9UI33 1791 aa24.21■■□□□ 1.47
TSSC4-210ENST00000496468 KDM6AO15550 1401 aaPredicted RBP24.2■■□□□ 1.46
TSSC4-210ENST00000496468 HSP90AB1P08238 724 aaKnown RBP24.2■■□□□ 1.46
TSSC4-210ENST00000496468 BCL9O00512 1426 aa24.19■■□□□ 1.46
TSSC4-210ENST00000496468 NHSQ6T4R5 1651 aa24.19■■□□□ 1.46
TSSC4-210ENST00000496468 APAF1O14727 1248 aa24.19■■□□□ 1.46
TSSC4-210ENST00000496468 GNAT3A8MTJ3 354 aa24.18■■□□□ 1.46
TSSC4-210ENST00000496468 TMPOP42166 694 aaKnown RBP24.18■■□□□ 1.46
TSSC4-210ENST00000496468 RRP7AQ9Y3A4 280 aaKnown RBP24.18■■□□□ 1.46
TSSC4-210ENST00000496468 FAM182BQ5T319 152 aa24.17■■□□□ 1.46
TSSC4-210ENST00000496468 MRC1P22897 1456 aa24.17■■□□□ 1.46
TSSC4-210ENST00000496468 SBF2Q86WG5 1849 aa24.17■■□□□ 1.46
TSSC4-210ENST00000496468 LMOD3Q0VAK6 560 aa24.16■■□□□ 1.46
TSSC4-210ENST00000496468 NKX1-1Q15270 411 aaPredicted RBP24.16■■□□□ 1.46
TSSC4-210ENST00000496468 RIPK4P57078 832 aa24.15■■□□□ 1.46
TSSC4-210ENST00000496468 NEUROD2Q15784 382 aa24.15■■□□□ 1.46
TSSC4-210ENST00000496468 RTF1Q92541 710 aaKnown RBP24.15■■□□□ 1.46
TSSC4-210ENST00000496468 DCAF5Q96JK2 942 aa24.15■■□□□ 1.46
TSSC4-210ENST00000496468 EP400Q96L91 3159 aa24.15■■□□□ 1.46
TSSC4-210ENST00000496468 MPRIPQ6WCQ1 1025 aa24.14■■□□□ 1.45
TSSC4-210ENST00000496468 FAM196AQ6ZSG2 479 aa24.14■■□□□ 1.45
TSSC4-210ENST00000496468 ITGB4P16144 1822 aa24.13■■□□□ 1.45
TSSC4-210ENST00000496468 SENP3-EIF4A1A0A087X0R7 540 aa24.12■■□□□ 1.45
TSSC4-210ENST00000496468 HTATSF1O43719 755 aaKnown RBP24.12■■□□□ 1.45
TSSC4-210ENST00000496468 SIPA1L3O60292 1781 aaPredicted RBP24.11■■□□□ 1.45
TSSC4-210ENST00000496468 RNMTO43148 476 aaKnown RBP24.11■■□□□ 1.45
TSSC4-210ENST00000496468 CEMIPQ8WUJ3 1361 aa24.11■■□□□ 1.45
TSSC4-210ENST00000496468 MCM10Q7L590 875 aa24.1■■□□□ 1.45
TSSC4-210ENST00000496468 ACSBG1Q96GR2 724 aa24.1■■□□□ 1.45
TSSC4-210ENST00000496468 TNS1Q9HBL0 1735 aaKnown RBP24.1■■□□□ 1.45
TSSC4-210ENST00000496468 BTAF1O14981 1849 aa24.08■■□□□ 1.45
TSSC4-210ENST00000496468 DCTN1Q14203 1278 aa24.08■■□□□ 1.45
TSSC4-210ENST00000496468 SYTL4Q96C24 671 aaPredicted RBP24.08■■□□□ 1.45
TSSC4-210ENST00000496468 LGR6Q9HBX8 967 aa24.08■■□□□ 1.45
TSSC4-210ENST00000496468 ERVV-2B6SEH9 535 aa24.07■■□□□ 1.44
TSSC4-210ENST00000496468 NGEFQ8N5V2 710 aa24.07■■□□□ 1.44
TSSC4-210ENST00000496468 IL17REQ8NFR9 667 aa24.07■■□□□ 1.44
TSSC4-210ENST00000496468 TRIM35Q9UPQ4 493 aa24.07■■□□□ 1.44
TSSC4-210ENST00000496468 PAPPAQ13219 1627 aa24.06■■□□□ 1.44
TSSC4-210ENST00000496468 TEFQ10587 303 aa24.06■■□□□ 1.44
TSSC4-210ENST00000496468 NCBP3Q53F19 620 aaKnown RBP24.06■■□□□ 1.44
TSSC4-210ENST00000496468 TMOD3Q9NYL9 352 aa24.06■■□□□ 1.44
TSSC4-210ENST00000496468 SALL2Q9Y467 1007 aaPredicted RBP24.06■■□□□ 1.44
TSSC4-210ENST00000496468 CABP4P57796 275 aa24.05■■□□□ 1.44
TSSC4-210ENST00000496468 CCDC27Q2M243 656 aa24.05■■□□□ 1.44
TSSC4-210ENST00000496468 THUMPD2Q9BTF0 503 aaKnown RBP24.05■■□□□ 1.44
TSSC4-210ENST00000496468 SLC52A2Q9HAB3 445 aa24.05■■□□□ 1.44
TSSC4-210ENST00000496468 KAT6BQ8WYB5 2073 aa24.05■■□□□ 1.44
TSSC4-210ENST00000496468 PRIM1P49642 420 aaKnown RBP24.04■■□□□ 1.44
TSSC4-210ENST00000496468 HNRNPUQ00839 825 aaKnown RBP eCLIP24.04■■□□□ 1.44
TSSC4-210ENST00000496468 KCNQ2O43526 872 aa24.02■■□□□ 1.44
TSSC4-210ENST00000496468 TRIM37O94972 964 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms