RNA–Protein interactions for RNA: ENST00000493711.1

SNX17-208, Transcript of sorting nexin 17, humanhuman

TSL 3

Gene SNX17, Length 583 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-208ENST00000493711 NBPF6Q5VWK0 638 aa16.52■□□□□ 0.24
SNX17-208ENST00000493711 NBPF4Q96M43 638 aa16.52■□□□□ 0.24
SNX17-208ENST00000493711 THRAP3Q9Y2W1 955 aaKnown RBP16.52■□□□□ 0.24
SNX17-208ENST00000493711 MAP2P11137 1827 aaKnown RBP16.52■□□□□ 0.23
SNX17-208ENST00000493711 LTN1O94822 1766 aa16.51■□□□□ 0.23
SNX17-208ENST00000493711 LARP1Q6PKG0 1096 aaKnown RBP16.51■□□□□ 0.23
SNX17-208ENST00000493711 BCL9LQ86UU0 1499 aa16.5■□□□□ 0.23
SNX17-208ENST00000493711 CDCA7Q9BWT1 371 aaPredicted RBP16.5■□□□□ 0.23
SNX17-208ENST00000493711 TRPC5Q9UL62 973 aaPredicted RBP16.5■□□□□ 0.23
SNX17-208ENST00000493711 KDRP35968 1356 aa16.5■□□□□ 0.23
SNX17-208ENST00000493711 NCAPD2Q15021 1401 aa16.49■□□□□ 0.23
SNX17-208ENST00000493711 SULT6B1Q6IMI4 303 aa16.49■□□□□ 0.23
SNX17-208ENST00000493711 RAPGEF4Q8WZA2 1011 aa16.49■□□□□ 0.23
SNX17-208ENST00000493711 ADAMTS8Q9UP79 889 aa16.49■□□□□ 0.23
SNX17-208ENST00000493711 SPATA31A5Q5VU36 1347 aa16.48■□□□□ 0.23
SNX17-208ENST00000493711 SPATA31A7Q8IWB4 1347 aa16.48■□□□□ 0.23
SNX17-208ENST00000493711 NWD2Q9ULI1 1742 aa16.48■□□□□ 0.23
SNX17-208ENST00000493711 FAM9BQ8IZU0 186 aa16.48■□□□□ 0.23
SNX17-208ENST00000493711 TCP11L2Q8N4U5 519 aa16.48■□□□□ 0.23
SNX17-208ENST00000493711 CCDC9Q9Y3X0 531 aaKnown RBP16.48■□□□□ 0.23
SNX17-208ENST00000493711 SPATA31A1Q5TZJ5 1347 aa16.47■□□□□ 0.23
SNX17-208ENST00000493711 RBM6P78332 1123 aaKnown RBP16.47■□□□□ 0.23
SNX17-208ENST00000493711 QTRT2Q9H974 415 aaKnown RBP16.47■□□□□ 0.23
SNX17-208ENST00000493711 TATP17735 454 aaPredicted RBP16.46■□□□□ 0.23
SNX17-208ENST00000493711 BARGINQ6ZT62 677 aa16.46■□□□□ 0.23
SNX17-208ENST00000493711 RUNDC1Q96C34 613 aa16.46■□□□□ 0.23
SNX17-208ENST00000493711 RSPH6AQ9H0K4 717 aa16.46■□□□□ 0.23
SNX17-208ENST00000493711 FAM208AQ9UK61 1670 aaKnown RBP16.46■□□□□ 0.23
SNX17-208ENST00000493711 MAPK8IP3Q9UPT6 1336 aa16.45■□□□□ 0.22
SNX17-208ENST00000493711 HMOX1P09601 288 aa16.45■□□□□ 0.22
SNX17-208ENST00000493711 IL2RBP14784 551 aa16.45■□□□□ 0.22
SNX17-208ENST00000493711 AMOTQ4VCS5 1084 aa16.45■□□□□ 0.22
SNX17-208ENST00000493711 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.45■□□□□ 0.225e-9■□□□□ 8.6
SNX17-208ENST00000493711 PLCH1Q4KWH8 1693 aa16.45■□□□□ 0.22
SNX17-208ENST00000493711 ATRNO75882 1429 aa16.45■□□□□ 0.22
SNX17-208ENST00000493711 PITPNM1O00562 1244 aa16.44■□□□□ 0.22
SNX17-208ENST00000493711 PRKAR2BP31323 418 aa16.44■□□□□ 0.22
SNX17-208ENST00000493711 PLEKHO1Q53GL0 409 aaPredicted RBP16.44■□□□□ 0.22
SNX17-208ENST00000493711 AEBP1Q8IUX7 1158 aa16.44■□□□□ 0.22
SNX17-208ENST00000493711 NGEFQ8N5V2 710 aa16.44■□□□□ 0.22
SNX17-208ENST00000493711 USHBP1Q8N6Y0 703 aa16.44■□□□□ 0.22
SNX17-208ENST00000493711 GJD4Q96KN9 370 aaPredicted RBP16.44■□□□□ 0.22
SNX17-208ENST00000493711 SPG7Q9UQ90 795 aa16.43■□□□□ 0.22
SNX17-208ENST00000493711 RGS12O14924 1447 aa16.43■□□□□ 0.22
SNX17-208ENST00000493711 GAS2L2Q8NHY3 880 aa16.42■□□□□ 0.22
SNX17-208ENST00000493711 PLEKHF1Q96S99 279 aa16.42■□□□□ 0.22
SNX17-208ENST00000493711 USP35Q9P2H5 1018 aa16.42■□□□□ 0.22
SNX17-208ENST00000493711 SSUH2Q9Y2M2 353 aa16.42■□□□□ 0.22
SNX17-208ENST00000493711 RGPD1P0DJD0 1748 aa16.42■□□□□ 0.22
SNX17-208ENST00000493711 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.42■□□□□ 0.22
SNX17-208ENST00000493711 NRAPQ86VF7 1730 aa16.41■□□□□ 0.22
SNX17-208ENST00000493711 OVOS2A0A0G2JMS6 1433 aa16.39■□□□□ 0.21
SNX17-208ENST00000493711 ONECUT3O60422 494 aaPredicted RBP16.39■□□□□ 0.21
SNX17-208ENST00000493711 ZCRB1Q8TBF4 217 aaKnown RBP16.39■□□□□ 0.21
SNX17-208ENST00000493711 DISP2A7MBM2 1401 aa16.38■□□□□ 0.21
SNX17-208ENST00000493711 EXOC5O00471 708 aa16.38■□□□□ 0.21
SNX17-208ENST00000493711 LMOD3Q0VAK6 560 aa16.37■□□□□ 0.21
SNX17-208ENST00000493711 NFE2L2Q16236 605 aa16.37■□□□□ 0.21
SNX17-208ENST00000493711 FAM98CQ17RN3 349 aaKnown RBP16.37■□□□□ 0.21
SNX17-208ENST00000493711 CCDC146Q8IYE0 955 aa16.37■□□□□ 0.21
SNX17-208ENST00000493711 PHACTR3Q96KR7 559 aa16.37■□□□□ 0.21
SNX17-208ENST00000493711 PCDH11XQ9BZA7 1347 aa16.37■□□□□ 0.21
SNX17-208ENST00000493711 PCDH11YQ9BZA8 1340 aa16.37■□□□□ 0.21
SNX17-208ENST00000493711 MEGF6O75095 1541 aa16.36■□□□□ 0.21
SNX17-208ENST00000493711 HTATSF1O43719 755 aaKnown RBP16.36■□□□□ 0.21
SNX17-208ENST00000493711 HSP90AB1P08238 724 aaKnown RBP16.36■□□□□ 0.21
SNX17-208ENST00000493711 DDB1Q16531 1140 aa16.36■□□□□ 0.21
SNX17-208ENST00000493711 C1orf141Q5JVX7 400 aa16.36■□□□□ 0.21
SNX17-208ENST00000493711 RGPD5Q99666 1765 aa16.36■□□□□ 0.21
SNX17-208ENST00000493711 APAF1O14727 1248 aa16.35■□□□□ 0.21
SNX17-208ENST00000493711 TMPOP42166 694 aaKnown RBP16.35■□□□□ 0.21
SNX17-208ENST00000493711 MTHFSDQ2M296 383 aaKnown RBP16.35■□□□□ 0.21
SNX17-208ENST00000493711 AKAP4Q5JQC9 854 aa16.35■□□□□ 0.21
SNX17-208ENST00000493711 ZNF530Q6P9A1 599 aaPredicted RBP16.35■□□□□ 0.21
SNX17-208ENST00000493711 IFNL2Q8IZJ0 200 aa16.35■□□□□ 0.21
SNX17-208ENST00000493711 EP400Q96L91 3159 aa16.34■□□□□ 0.21
SNX17-208ENST00000493711 A0A0G2JS52 829 aa16.34■□□□□ 0.21
SNX17-208ENST00000493711 MYT1Q01538 1121 aa16.34■□□□□ 0.21
SNX17-208ENST00000493711 GNAT3A8MTJ3 354 aa16.33■□□□□ 0.2
SNX17-208ENST00000493711 RIPK4P57078 832 aa16.33■□□□□ 0.2
SNX17-208ENST00000493711 CCDC27Q2M243 656 aa16.33■□□□□ 0.2
SNX17-208ENST00000493711 RTF1Q92541 710 aaKnown RBP16.33■□□□□ 0.2
SNX17-208ENST00000493711 CALD1Q05682 793 aaKnown RBP16.32■□□□□ 0.2
SNX17-208ENST00000493711 PDE3BQ13370 1112 aa16.32■□□□□ 0.2
SNX17-208ENST00000493711 TNS2Q63HR2 1409 aa16.32■□□□□ 0.2
SNX17-208ENST00000493711 MAP3K5Q99683 1374 aa16.31■□□□□ 0.2
SNX17-208ENST00000493711 PHKG2P15735 406 aa16.31■□□□□ 0.2
SNX17-208ENST00000493711 CCDC125Q86Z20 511 aa16.31■□□□□ 0.2
SNX17-208ENST00000493711 SEPT12Q8IYM1 358 aa16.31■□□□□ 0.2
SNX17-208ENST00000493711 GLI3P10071 1580 aa16.3■□□□□ 0.2
SNX17-208ENST00000493711 HNRNPUQ00839 825 aaKnown RBP eCLIP16.3■□□□□ 0.2
SNX17-208ENST00000493711 NKX1-1Q15270 411 aaPredicted RBP16.3■□□□□ 0.2
SNX17-208ENST00000493711 DDX54Q8TDD1 881 aaKnown RBP16.3■□□□□ 0.2
SNX17-208ENST00000493711 DCAF5Q96JK2 942 aa16.3■□□□□ 0.2
SNX17-208ENST00000493711 PARP4Q9UKK3 1724 aaKnown RBP16.3■□□□□ 0.2
SNX17-208ENST00000493711 CYP27B1O15528 508 aa16.29■□□□□ 0.2
SNX17-208ENST00000493711 NEUROD2Q15784 382 aa16.28■□□□□ 0.2
SNX17-208ENST00000493711 RRP7AQ9Y3A4 280 aaKnown RBP16.28■□□□□ 0.2
SNX17-208ENST00000493711 RGPD2P0DJD1 1756 aa16.26■□□□□ 0.19
SNX17-208ENST00000493711 ERVV-2B6SEH9 535 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 137 ms