RNA–Protein interactions for RNA: ENST00000493648.1

TOP3A-207, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 503 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-207ENST00000493648 USHBP1Q8N6Y0 703 aa9.49□□□□□ -0.89
TOP3A-207ENST00000493648 CAMKK2Q96RR4 588 aa9.49□□□□□ -0.89
TOP3A-207ENST00000493648 KAT6BQ8WYB5 2073 aa9.49□□□□□ -0.89
TOP3A-207ENST00000493648 BCL9O00512 1426 aa9.48□□□□□ -0.89
TOP3A-207ENST00000493648 TNS2Q63HR2 1409 aa9.48□□□□□ -0.89
TOP3A-207ENST00000493648 CC2D1BQ5T0F9 858 aaKnown RBP9.48□□□□□ -0.89
TOP3A-207ENST00000493648 EP400Q96L91 3159 aa9.48□□□□□ -0.89
TOP3A-207ENST00000493648 PARD3Q8TEW0 1356 aa9.48□□□□□ -0.89
TOP3A-207ENST00000493648 SBF2Q86WG5 1849 aa9.47□□□□□ -0.89
TOP3A-207ENST00000493648 PLSCR1O15162 318 aa9.47□□□□□ -0.89
TOP3A-207ENST00000493648 ZEB1P37275 1124 aaPredicted RBP9.47□□□□□ -0.89
TOP3A-207ENST00000493648 EIF4A2Q14240 407 aaKnown RBP9.47□□□□□ -0.89
TOP3A-207ENST00000493648 ACSBG1Q96GR2 724 aa9.47□□□□□ -0.89
TOP3A-207ENST00000493648 EYA1Q99502 592 aa9.47□□□□□ -0.89
TOP3A-207ENST00000493648 TNS1Q9HBL0 1735 aaKnown RBP9.47□□□□□ -0.89
TOP3A-207ENST00000493648 CNGB1Q14028 1251 aaPredicted RBP9.46□□□□□ -0.9
TOP3A-207ENST00000493648 NBPF14Q5TI25 921 aa9.46□□□□□ -0.9
TOP3A-207ENST00000493648 SPG7Q9UQ90 795 aa9.46□□□□□ -0.9
TOP3A-207ENST00000493648 NPC1L1Q9UHC9 1359 aa9.46□□□□□ -0.9
TOP3A-207ENST00000493648 KCNQ2O43526 872 aa9.45□□□□□ -0.9
TOP3A-207ENST00000493648 MTHFSP49914 203 aa9.45□□□□□ -0.9
TOP3A-207ENST00000493648 PTF1AQ7RTS3 328 aa9.45□□□□□ -0.9
TOP3A-207ENST00000493648 MEGF6O75095 1541 aa9.45□□□□□ -0.9
TOP3A-207ENST00000493648 SYTL4Q96C24 671 aaPredicted RBP9.44□□□□□ -0.9
TOP3A-207ENST00000493648 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.44□□□□□ -0.9
TOP3A-207ENST00000493648 PCDH11XQ9BZA7 1347 aa9.44□□□□□ -0.9
TOP3A-207ENST00000493648 PCDH11YQ9BZA8 1340 aa9.44□□□□□ -0.9
TOP3A-207ENST00000493648 IGSF1Q8N6C5 1336 aa9.43□□□□□ -0.9
TOP3A-207ENST00000493648 PRIM1P49642 420 aaKnown RBP9.43□□□□□ -0.9
TOP3A-207ENST00000493648 PLEKHO1Q53GL0 409 aaPredicted RBP9.43□□□□□ -0.9
TOP3A-207ENST00000493648 NCAPD2Q15021 1401 aa9.42□□□□□ -0.9
TOP3A-207ENST00000493648 PSDA5PKW4 1024 aaPredicted RBP9.42□□□□□ -0.9
TOP3A-207ENST00000493648 IL13P35225 146 aa9.42□□□□□ -0.9
TOP3A-207ENST00000493648 R3HDM1Q15032 1099 aaKnown RBP9.42□□□□□ -0.9
TOP3A-207ENST00000493648 TXNRD1Q16881 649 aa9.42□□□□□ -0.9
TOP3A-207ENST00000493648 PROM2Q8N271 834 aa9.42□□□□□ -0.9
TOP3A-207ENST00000493648 CYP27B1O15528 508 aa9.41□□□□□ -0.9
TOP3A-207ENST00000493648 DIAPH1O60610 1272 aaKnown RBP9.41□□□□□ -0.9
TOP3A-207ENST00000493648 NKX1-1Q15270 411 aaPredicted RBP9.41□□□□□ -0.9
TOP3A-207ENST00000493648 AMOTQ4VCS5 1084 aa9.41□□□□□ -0.9
TOP3A-207ENST00000493648 SULT6B1Q6IMI4 303 aa9.41□□□□□ -0.9
TOP3A-207ENST00000493648 IFNL2Q8IZJ0 200 aa9.41□□□□□ -0.9
TOP3A-207ENST00000493648 NHSQ6T4R5 1651 aa9.41□□□□□ -0.9
TOP3A-207ENST00000493648 RGPD3A6NKT7 1758 aaPredicted RBP9.4□□□□□ -0.9
TOP3A-207ENST00000493648 RGPD4Q7Z3J3 1758 aa9.4□□□□□ -0.9
TOP3A-207ENST00000493648 PLEKHG2Q9H7P9 1386 aa9.4□□□□□ -0.9
TOP3A-207ENST00000493648 CFAP53Q96M91 514 aa9.4□□□□□ -0.9
TOP3A-207ENST00000493648 SHANK3Q9BYB0 1731 aa9.39□□□□□ -0.91
TOP3A-207ENST00000493648 RREB1Q92766 1687 aa9.39□□□□□ -0.91
TOP3A-207ENST00000493648 HSP90AB1P08238 724 aaKnown RBP9.39□□□□□ -0.91
TOP3A-207ENST00000493648 PHKG2P15735 406 aa9.39□□□□□ -0.91
TOP3A-207ENST00000493648 HMGB2P26583 209 aaKnown RBP9.39□□□□□ -0.91
TOP3A-207ENST00000493648 SLC27A3Q5K4L6 730 aa9.39□□□□□ -0.91
TOP3A-207ENST00000493648 MPRIPQ6WCQ1 1025 aa9.39□□□□□ -0.91
TOP3A-207ENST00000493648 AEBP1Q8IUX7 1158 aa9.39□□□□□ -0.91
TOP3A-207ENST00000493648 STK32BQ9NY57 414 aa9.39□□□□□ -0.91
TOP3A-207ENST00000493648 BTAF1O14981 1849 aa9.39□□□□□ -0.91
TOP3A-207ENST00000493648 PPP2R1AP30153 589 aa9.38□□□□□ -0.91
TOP3A-207ENST00000493648 DDX10Q13206 875 aaKnown RBP9.38□□□□□ -0.91
TOP3A-207ENST00000493648 C1orf141Q5JVX7 400 aa9.38□□□□□ -0.91
TOP3A-207ENST00000493648 NUDCQ9Y266 331 aa9.38□□□□□ -0.91
TOP3A-207ENST00000493648 NUP188Q5SRE5 1749 aa9.38□□□□□ -0.91
TOP3A-207ENST00000493648 PKD1L3Q7Z443 1732 aa9.38□□□□□ -0.91
TOP3A-207ENST00000493648 DOT1LQ8TEK3 1739 aa9.37□□□□□ -0.91
TOP3A-207ENST00000493648 U2SURPO15042 1029 aaKnown RBP9.37□□□□□ -0.91
TOP3A-207ENST00000493648 HMOX1P09601 288 aa9.37□□□□□ -0.91
TOP3A-207ENST00000493648 ZNF530Q6P9A1 599 aaPredicted RBP9.37□□□□□ -0.91
TOP3A-207ENST00000493648 SMARCC1Q92922 1105 aaPredicted RBP9.37□□□□□ -0.91
TOP3A-207ENST00000493648 DCAF5Q96JK2 942 aa9.37□□□□□ -0.91
TOP3A-207ENST00000493648 TMOD3Q9NYL9 352 aa9.37□□□□□ -0.91
TOP3A-207ENST00000493648 KDRP35968 1356 aa9.37□□□□□ -0.91
TOP3A-207ENST00000493648 ERVV-2B6SEH9 535 aa9.36□□□□□ -0.91
TOP3A-207ENST00000493648 SLC15A2Q16348 729 aa9.36□□□□□ -0.91
TOP3A-207ENST00000493648 PIGBQ92521 554 aa9.36□□□□□ -0.91
TOP3A-207ENST00000493648 CCNL1Q9UK58 526 aaPredicted RBP9.36□□□□□ -0.91
TOP3A-207ENST00000493648 CABP4P57796 275 aa9.35□□□□□ -0.91
TOP3A-207ENST00000493648 RALBP1Q15311 655 aa9.35□□□□□ -0.91
TOP3A-207ENST00000493648 NCBP3Q53F19 620 aaKnown RBP9.35□□□□□ -0.91
TOP3A-207ENST00000493648 AKAP4Q5JQC9 854 aa9.35□□□□□ -0.91
TOP3A-207ENST00000493648 LRRC4BQ9NT99 713 aa9.35□□□□□ -0.91
TOP3A-207ENST00000493648 ITGB4P16144 1822 aa9.35□□□□□ -0.91
TOP3A-207ENST00000493648 ANO8Q9HCE9 1232 aaPredicted RBP9.34□□□□□ -0.91
TOP3A-207ENST00000493648 U2AF1L5P0DN76 240 aaPredicted RBP9.33□□□□□ -0.92
TOP3A-207ENST00000493648 KCNQ4P56696 695 aa9.33□□□□□ -0.92
TOP3A-207ENST00000493648 U2AF1Q01081 240 aaKnown RBP eCLIP9.33□□□□□ -0.92
TOP3A-207ENST00000493648 SPON1Q9HCB6 807 aa9.33□□□□□ -0.92
TOP3A-207ENST00000493648 PALLDQ8WX93 1383 aa9.33□□□□□ -0.92
TOP3A-207ENST00000493648 LY75O60449 1722 aa9.32□□□□□ -0.92
TOP3A-207ENST00000493648 FCHSD2O94868 740 aa9.32□□□□□ -0.92
TOP3A-207ENST00000493648 MTHFSDQ2M296 383 aaKnown RBP9.32□□□□□ -0.92
TOP3A-207ENST00000493648 NFATC2IPQ8NCF5 419 aa9.32□□□□□ -0.92
TOP3A-207ENST00000493648 GAS2L2Q8NHY3 880 aa9.32□□□□□ -0.92
TOP3A-207ENST00000493648 AKT1S1Q96B36 256 aa9.32□□□□□ -0.92
TOP3A-207ENST00000493648 ATG3Q9NT62 314 aa9.32□□□□□ -0.92
TOP3A-207ENST00000493648 TFCP2L1Q9NZI6 479 aa9.32□□□□□ -0.92
TOP3A-207ENST00000493648 ASAP1Q9ULH1 1129 aa9.32□□□□□ -0.92
TOP3A-207ENST00000493648 COL3A1P02461 1466 aaPredicted RBP9.32□□□□□ -0.92
TOP3A-207ENST00000493648 TOGARAM1Q9Y4F4 1720 aa9.31□□□□□ -0.92
TOP3A-207ENST00000493648 LOC102724428A0A0B4J2F2 783 aa9.31□□□□□ -0.92
TOP3A-207ENST00000493648 NEFMP07197 916 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 269.1 ms