RNA–Protein interactions for RNA: ENST00000492571.1

TNFRSF9-203, Transcript of TNF receptor superfamily member 9, humanhuman

TSL 3

Gene TNFRSF9, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF9-203ENST00000492571 SOX12O15370 315 aa14□□□□□ -0.17
TNFRSF9-203ENST00000492571 SYT17Q9BSW7 474 aa14□□□□□ -0.17
TNFRSF9-203ENST00000492571 FHDC1Q9C0D6 1143 aaPredicted RBP14□□□□□ -0.17
TNFRSF9-203ENST00000492571 ARHGEF28Q8N1W1 1705 aaKnown RBP13.99□□□□□ -0.17
TNFRSF9-203ENST00000492571 PDGFDQ9GZP0 370 aaPredicted RBP13.99□□□□□ -0.17
TNFRSF9-203ENST00000492571 AXIN2Q9Y2T1 843 aa13.99□□□□□ -0.17
TNFRSF9-203ENST00000492571 USP6P35125 1406 aa13.98□□□□□ -0.17
TNFRSF9-203ENST00000492571 LMO7Q8WWI1 1683 aa13.98□□□□□ -0.17
TNFRSF9-203ENST00000492571 PTGER2P43116 358 aa13.98□□□□□ -0.17
TNFRSF9-203ENST00000492571 PTF1AQ7RTS3 328 aa13.98□□□□□ -0.17
TNFRSF9-203ENST00000492571 ARHGEF25Q86VW2 580 aa13.98□□□□□ -0.17
TNFRSF9-203ENST00000492571 KLHL34Q8N239 644 aa13.98□□□□□ -0.17
TNFRSF9-203ENST00000492571 PARP4Q9UKK3 1724 aaKnown RBP13.98□□□□□ -0.17
TNFRSF9-203ENST00000492571 BCL9O00512 1426 aa13.98□□□□□ -0.17
TNFRSF9-203ENST00000492571 SENP3-EIF4A1A0A087X0R7 540 aa13.97□□□□□ -0.17
TNFRSF9-203ENST00000492571 ARXQ96QS3 562 aa13.97□□□□□ -0.17
TNFRSF9-203ENST00000492571 CCDC7Q96M83 1385 aa13.96□□□□□ -0.17
TNFRSF9-203ENST00000492571 PYGBP11216 843 aa13.96□□□□□ -0.17
TNFRSF9-203ENST00000492571 TTC21AQ8NDW8 1320 aa13.95□□□□□ -0.18
TNFRSF9-203ENST00000492571 GPR162Q16538 588 aa13.95□□□□□ -0.18
TNFRSF9-203ENST00000492571 TOPAZ1Q8N9V7 1692 aa13.95□□□□□ -0.18
TNFRSF9-203ENST00000492571 TTC21BQ7Z4L5 1316 aa13.94□□□□□ -0.18
TNFRSF9-203ENST00000492571 CPSF1Q10570 1443 aaKnown RBP13.94□□□□□ -0.18
TNFRSF9-203ENST00000492571 NLRP2Q9NX02 1062 aa13.94□□□□□ -0.18
TNFRSF9-203ENST00000492571 POLD1P28340 1107 aa13.93□□□□□ -0.18
TNFRSF9-203ENST00000492571 C1QTNF8P60827 252 aa13.93□□□□□ -0.18
TNFRSF9-203ENST00000492571 ACSBG1Q96GR2 724 aa13.93□□□□□ -0.18
TNFRSF9-203ENST00000492571 RGPD3A6NKT7 1758 aaPredicted RBP13.92□□□□□ -0.18
TNFRSF9-203ENST00000492571 RGPD4Q7Z3J3 1758 aa13.92□□□□□ -0.18
TNFRSF9-203ENST00000492571 SLIT3O75094 1523 aa13.92□□□□□ -0.18
TNFRSF9-203ENST00000492571 TRIM35Q9UPQ4 493 aa13.92□□□□□ -0.18
TNFRSF9-203ENST00000492571 IL2RBP14784 551 aa13.91□□□□□ -0.18
TNFRSF9-203ENST00000492571 COLQQ9Y215 455 aaPredicted RBP13.91□□□□□ -0.18
TNFRSF9-203ENST00000492571 LRRC37A3O60309 1634 aa13.9□□□□□ -0.18
TNFRSF9-203ENST00000492571 PEAK1Q9H792 1746 aa13.9□□□□□ -0.18
TNFRSF9-203ENST00000492571 KIAA1210Q9ULL0 1709 aa13.9□□□□□ -0.18
TNFRSF9-203ENST00000492571 SLC16A10Q8TF71 515 aa13.9□□□□□ -0.18
TNFRSF9-203ENST00000492571 KTN1Q86UP2 1357 aaKnown RBP13.9□□□□□ -0.18
TNFRSF9-203ENST00000492571 UTRNP46939 3433 aa13.89□□□□□ -0.19
TNFRSF9-203ENST00000492571 IFNLR1Q8IU57 520 aaPredicted RBP13.89□□□□□ -0.19
TNFRSF9-203ENST00000492571 GIGYF1O75420 1035 aaPredicted RBP13.88□□□□□ -0.19
TNFRSF9-203ENST00000492571 SLC27A3Q5K4L6 730 aa13.88□□□□□ -0.19
TNFRSF9-203ENST00000492571 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.88□□□□□ -0.19
TNFRSF9-203ENST00000492571 TNS2Q63HR2 1409 aa13.88□□□□□ -0.19
TNFRSF9-203ENST00000492571 TMEM106CQ9BVX2 250 aa13.87□□□□□ -0.19
TNFRSF9-203ENST00000492571 TFCP2L1Q9NZI6 479 aa13.87□□□□□ -0.19
TNFRSF9-203ENST00000492571 PCDHB8Q9UN66 801 aa13.87□□□□□ -0.19
TNFRSF9-203ENST00000492571 CASZ1Q86V15 1759 aa13.86□□□□□ -0.19
TNFRSF9-203ENST00000492571 MAP3K5Q99683 1374 aa13.86□□□□□ -0.19
TNFRSF9-203ENST00000492571 HDGFL2Q7Z4V5 671 aaPredicted RBP13.86□□□□□ -0.19
TNFRSF9-203ENST00000492571 ANKRD24Q8TF21 1146 aa13.86□□□□□ -0.19
TNFRSF9-203ENST00000492571 L3MBTL2Q969R5 705 aa13.86□□□□□ -0.19
TNFRSF9-203ENST00000492571 ERBB3P21860 1342 aa13.86□□□□□ -0.19
TNFRSF9-203ENST00000492571 ROCK2O75116 1388 aaKnown RBP13.85□□□□□ -0.19
TNFRSF9-203ENST00000492571 DDX54Q8TDD1 881 aaKnown RBP13.85□□□□□ -0.19
TNFRSF9-203ENST00000492571 TMC1Q8TDI8 760 aa13.85□□□□□ -0.19
TNFRSF9-203ENST00000492571 SYTL4Q96C24 671 aaPredicted RBP13.85□□□□□ -0.19
TNFRSF9-203ENST00000492571 SBF2Q86WG5 1849 aa13.85□□□□□ -0.19
TNFRSF9-203ENST00000492571 MYOM1P52179 1685 aa13.85□□□□□ -0.19
TNFRSF9-203ENST00000492571 GRIN3BO60391 1043 aa13.84□□□□□ -0.19
TNFRSF9-203ENST00000492571 HMGB2P26583 209 aaKnown RBP13.84□□□□□ -0.19
TNFRSF9-203ENST00000492571 GSE1Q14687 1217 aa13.83□□□□□ -0.2
TNFRSF9-203ENST00000492571 ZNF827Q17R98 1081 aa13.83□□□□□ -0.2
TNFRSF9-203ENST00000492571 PIK3C2AO00443 1686 aa13.82□□□□□ -0.2
TNFRSF9-203ENST00000492571 COL18A1P39060 1754 aa13.82□□□□□ -0.2
TNFRSF9-203ENST00000492571 AKAP12Q02952 1782 aa13.82□□□□□ -0.2
TNFRSF9-203ENST00000492571 LRRC4BQ9NT99 713 aa13.82□□□□□ -0.2
TNFRSF9-203ENST00000492571 TERF2IPQ9NYB0 399 aa13.82□□□□□ -0.2
TNFRSF9-203ENST00000492571 USP31Q70CQ4 1352 aa13.82□□□□□ -0.2
TNFRSF9-203ENST00000492571 QRICH2Q9H0J4 1663 aa13.82□□□□□ -0.2
TNFRSF9-203ENST00000492571 ABCC6O95255 1503 aa13.81□□□□□ -0.2
TNFRSF9-203ENST00000492571 NEUROD1Q13562 356 aa13.81□□□□□ -0.2
TNFRSF9-203ENST00000492571 IER5LQ5T953 404 aa13.81□□□□□ -0.2
TNFRSF9-203ENST00000492571 NME9Q86XW9 330 aa13.81□□□□□ -0.2
TNFRSF9-203ENST00000492571 SEC24BO95487 1268 aa13.8□□□□□ -0.2
TNFRSF9-203ENST00000492571 MAMSTRQ6ZN01 415 aa13.8□□□□□ -0.2
TNFRSF9-203ENST00000492571 LTV1Q96GA3 475 aaPredicted RBP13.8□□□□□ -0.2
TNFRSF9-203ENST00000492571 TRPM1Q7Z4N2 1603 aa13.79□□□□□ -0.2
TNFRSF9-203ENST00000492571 PRIM1P49642 420 aaKnown RBP13.79□□□□□ -0.2
TNFRSF9-203ENST00000492571 IFFO2Q5TF58 517 aa13.79□□□□□ -0.2
TNFRSF9-203ENST00000492571 IP6K1Q92551 441 aa13.79□□□□□ -0.2
TNFRSF9-203ENST00000492571 PNPLA7Q6ZV29 1317 aa13.78□□□□□ -0.2
TNFRSF9-203ENST00000492571 NFAT5O94916 1531 aa13.78□□□□□ -0.2
TNFRSF9-203ENST00000492571 SPOCK2Q92563 424 aa13.77□□□□□ -0.21
TNFRSF9-203ENST00000492571 CARD11Q9BXL7 1154 aa13.77□□□□□ -0.21
TNFRSF9-203ENST00000492571 CCNL1Q9UK58 526 aaPredicted RBP13.77□□□□□ -0.21
TNFRSF9-203ENST00000492571 NHSQ6T4R5 1651 aa13.76□□□□□ -0.21
TNFRSF9-203ENST00000492571 AMPHP49418 695 aa13.76□□□□□ -0.21
TNFRSF9-203ENST00000492571 ZCRB1Q8TBF4 217 aaKnown RBP13.76□□□□□ -0.21
TNFRSF9-203ENST00000492571 SLC12A5Q9H2X9 1139 aa13.76□□□□□ -0.21
TNFRSF9-203ENST00000492571 WNK3Q9BYP7 1800 aa13.76□□□□□ -0.21
TNFRSF9-203ENST00000492571 ANKRD36BQ8N2N9 1353 aa13.75□□□□□ -0.21
TNFRSF9-203ENST00000492571 CHRM1P11229 460 aaPredicted RBP13.75□□□□□ -0.21
TNFRSF9-203ENST00000492571 KCNQ4P56696 695 aa13.75□□□□□ -0.21
TNFRSF9-203ENST00000492571 NLGN2Q8NFZ4 835 aa13.75□□□□□ -0.21
TNFRSF9-203ENST00000492571 COG3Q96JB2 828 aa13.75□□□□□ -0.21
TNFRSF9-203ENST00000492571 SIN3AQ96ST3 1273 aa13.75□□□□□ -0.21
TNFRSF9-203ENST00000492571 CHD4Q14839 1912 aa13.74□□□□□ -0.21
TNFRSF9-203ENST00000492571 USP47Q96K76 1375 aa13.74□□□□□ -0.21
TNFRSF9-203ENST00000492571 SBNO2Q9Y2G9 1366 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms