RNA–Protein interactions for RNA: ENST00000491028.1

MCF2L-230, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 4

Gene MCF2L, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-230ENST00000491028 IL2RBP14784 551 aa24.65■■□□□ 1.54
MCF2L-230ENST00000491028 USP35Q9P2H5 1018 aa24.65■■□□□ 1.54
MCF2L-230ENST00000491028 BARGINQ6ZT62 677 aa24.64■■□□□ 1.54
MCF2L-230ENST00000491028 CDCA7Q9BWT1 371 aaPredicted RBP24.64■■□□□ 1.54
MCF2L-230ENST00000491028 AMOTQ4VCS5 1084 aa24.62■■□□□ 1.53
MCF2L-230ENST00000491028 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.62■■□□□ 1.53
MCF2L-230ENST00000491028 GJD4Q96KN9 370 aaPredicted RBP24.61■■□□□ 1.53
MCF2L-230ENST00000491028 PHACTR3Q96KR7 559 aa24.61■■□□□ 1.53
MCF2L-230ENST00000491028 THSD7AQ9UPZ6 1657 aa24.6■■□□□ 1.53
MCF2L-230ENST00000491028 PLEKHO1Q53GL0 409 aaPredicted RBP24.6■■□□□ 1.53
MCF2L-230ENST00000491028 GAS2L2Q8NHY3 880 aa24.6■■□□□ 1.53
MCF2L-230ENST00000491028 QTRT2Q9H974 415 aaKnown RBP24.6■■□□□ 1.53
MCF2L-230ENST00000491028 LRRC37A3O60309 1634 aa24.6■■□□□ 1.53
MCF2L-230ENST00000491028 DLG5Q8TDM6 1919 aa24.59■■□□□ 1.53
MCF2L-230ENST00000491028 SHANK3Q9BYB0 1731 aa24.59■■□□□ 1.53
MCF2L-230ENST00000491028 NGEFQ8N5V2 710 aa24.59■■□□□ 1.53
MCF2L-230ENST00000491028 APAF1O14727 1248 aa24.58■■□□□ 1.53
MCF2L-230ENST00000491028 NFE2L2Q16236 605 aa24.58■■□□□ 1.53
MCF2L-230ENST00000491028 NCBP3Q53F19 620 aaKnown RBP24.58■■□□□ 1.53
MCF2L-230ENST00000491028 SPG7Q9UQ90 795 aa24.58■■□□□ 1.53
MCF2L-230ENST00000491028 TNS2Q63HR2 1409 aa24.57■■□□□ 1.52
MCF2L-230ENST00000491028 TMPOP42166 694 aaKnown RBP24.56■■□□□ 1.52
MCF2L-230ENST00000491028 MTHFSDQ2M296 383 aaKnown RBP24.56■■□□□ 1.52
MCF2L-230ENST00000491028 HNRNPUQ00839 825 aaKnown RBP eCLIP24.54■■□□□ 1.52
MCF2L-230ENST00000491028 FAM98CQ17RN3 349 aaKnown RBP24.54■■□□□ 1.52
MCF2L-230ENST00000491028 ZCRB1Q8TBF4 217 aaKnown RBP24.54■■□□□ 1.52
MCF2L-230ENST00000491028 PCDH11XQ9BZA7 1347 aa24.54■■□□□ 1.52
MCF2L-230ENST00000491028 PCDH11YQ9BZA8 1340 aa24.54■■□□□ 1.52
MCF2L-230ENST00000491028 ZNF530Q6P9A1 599 aaPredicted RBP24.53■■□□□ 1.52
MCF2L-230ENST00000491028 ONECUT3O60422 494 aaPredicted RBP24.52■■□□□ 1.52
MCF2L-230ENST00000491028 RBM6P78332 1123 aaKnown RBP24.52■■□□□ 1.52
MCF2L-230ENST00000491028 LMOD3Q0VAK6 560 aa24.52■■□□□ 1.52
MCF2L-230ENST00000491028 MAP3K5Q99683 1374 aa24.52■■□□□ 1.52
MCF2L-230ENST00000491028 RIPK4P57078 832 aa24.51■■□□□ 1.51
MCF2L-230ENST00000491028 CCDC27Q2M243 656 aa24.51■■□□□ 1.51
MCF2L-230ENST00000491028 AKAP4Q5JQC9 854 aa24.51■■□□□ 1.51
MCF2L-230ENST00000491028 C1orf141Q5JVX7 400 aa24.51■■□□□ 1.51
MCF2L-230ENST00000491028 RGS17Q9UGC6 210 aaPredicted RBP24.51■■□□□ 1.51
MCF2L-230ENST00000491028 RRP7AQ9Y3A4 280 aaKnown RBP24.51■■□□□ 1.51
MCF2L-230ENST00000491028 ADAMTS7Q9UKP4 1686 aa24.5■■□□□ 1.51
MCF2L-230ENST00000491028 EXOC5O00471 708 aa24.5■■□□□ 1.51
MCF2L-230ENST00000491028 DDB1Q16531 1140 aa24.5■■□□□ 1.51
MCF2L-230ENST00000491028 VIRMAQ69YN4 1812 aaKnown RBP24.49■■□□□ 1.51
MCF2L-230ENST00000491028 HTATSF1O43719 755 aaKnown RBP24.49■■□□□ 1.51
MCF2L-230ENST00000491028 IFNL2Q8IZJ0 200 aa24.49■■□□□ 1.51
MCF2L-230ENST00000491028 GNAT3A8MTJ3 354 aa24.48■■□□□ 1.51
MCF2L-230ENST00000491028 PHKG2P15735 406 aa24.48■■□□□ 1.51
MCF2L-230ENST00000491028 NEUROD2Q15784 382 aa24.48■■□□□ 1.51
MCF2L-230ENST00000491028 ZBED9Q6R2W3 1325 aa24.47■■□□□ 1.51
MCF2L-230ENST00000491028 CYP27B1O15528 508 aa24.47■■□□□ 1.51
MCF2L-230ENST00000491028 SCN11AQ9UI33 1791 aa24.47■■□□□ 1.51
MCF2L-230ENST00000491028 A0A0G2JS52 829 aa24.46■■□□□ 1.51
MCF2L-230ENST00000491028 HSP90AB1P08238 724 aaKnown RBP24.46■■□□□ 1.51
MCF2L-230ENST00000491028 MYT1Q01538 1121 aa24.46■■□□□ 1.51
MCF2L-230ENST00000491028 YTHDC1Q96MU7 727 aaKnown RBP24.46■■□□□ 1.51
MCF2L-230ENST00000491028 RXRBP28702 533 aa24.45■■□□□ 1.5
MCF2L-230ENST00000491028 RTF1Q92541 710 aaKnown RBP24.45■■□□□ 1.5
MCF2L-230ENST00000491028 TRIM35Q9UPQ4 493 aa24.45■■□□□ 1.5
MCF2L-230ENST00000491028 SENP3-EIF4A1A0A087X0R7 540 aa24.44■■□□□ 1.5
MCF2L-230ENST00000491028 ZNF521Q96K83 1311 aa24.43■■□□□ 1.5
MCF2L-230ENST00000491028 NKX1-1Q15270 411 aaPredicted RBP24.43■■□□□ 1.5
MCF2L-230ENST00000491028 POTEAQ6S8J7 498 aa24.43■■□□□ 1.5
MCF2L-230ENST00000491028 SEPT12Q8IYM1 358 aa24.43■■□□□ 1.5
MCF2L-230ENST00000491028 SALL2Q9Y467 1007 aaPredicted RBP24.43■■□□□ 1.5
MCF2L-230ENST00000491028 WWC1Q8IX03 1113 aa24.42■■□□□ 1.5
MCF2L-230ENST00000491028 DDX54Q8TDD1 881 aaKnown RBP24.42■■□□□ 1.5
MCF2L-230ENST00000491028 BRWD3Q6RI45 1802 aa24.41■■□□□ 1.5
MCF2L-230ENST00000491028 DCAF5Q96JK2 942 aa24.41■■□□□ 1.5
MCF2L-230ENST00000491028 KDM6AO15550 1401 aaPredicted RBP24.41■■□□□ 1.5
MCF2L-230ENST00000491028 CEMIPQ8WUJ3 1361 aa24.41■■□□□ 1.5
MCF2L-230ENST00000491028 MRC1P22897 1456 aa24.4■■□□□ 1.5
MCF2L-230ENST00000491028 CALD1Q05682 793 aaKnown RBP24.4■■□□□ 1.5
MCF2L-230ENST00000491028 PDE3BQ13370 1112 aa24.4■■□□□ 1.5
MCF2L-230ENST00000491028 TOGARAM1Q9Y4F4 1720 aa24.39■■□□□ 1.5
MCF2L-230ENST00000491028 WDR63Q8IWG1 891 aa24.39■■□□□ 1.49
MCF2L-230ENST00000491028 RGS12O14924 1447 aa24.38■■□□□ 1.49
MCF2L-230ENST00000491028 RNMTO43148 476 aaKnown RBP24.38■■□□□ 1.49
MCF2L-230ENST00000491028 MPRIPQ6WCQ1 1025 aa24.38■■□□□ 1.49
MCF2L-230ENST00000491028 MCM10Q7L590 875 aa24.38■■□□□ 1.49
MCF2L-230ENST00000491028 SIPA1L3O60292 1781 aaPredicted RBP24.38■■□□□ 1.49
MCF2L-230ENST00000491028 DOT1LQ8TEK3 1739 aa24.38■■□□□ 1.49
MCF2L-230ENST00000491028 DCTN1Q14203 1278 aa24.37■■□□□ 1.49
MCF2L-230ENST00000491028 MARCH10Q8NA82 808 aaPredicted RBP24.37■■□□□ 1.49
MCF2L-230ENST00000491028 IL17REQ8NFR9 667 aa24.37■■□□□ 1.49
MCF2L-230ENST00000491028 IL16Q14005 1332 aa24.36■■□□□ 1.49
MCF2L-230ENST00000491028 BCL9O00512 1426 aa24.35■■□□□ 1.49
MCF2L-230ENST00000491028 LGR6Q9HBX8 967 aa24.35■■□□□ 1.49
MCF2L-230ENST00000491028 GOLGA2Q08379 1002 aa24.34■■□□□ 1.49
MCF2L-230ENST00000491028 THUMPD2Q9BTF0 503 aaKnown RBP24.34■■□□□ 1.49
MCF2L-230ENST00000491028 TEFQ10587 303 aa24.33■■□□□ 1.49
MCF2L-230ENST00000491028 ITGB4P16144 1822 aa24.33■■□□□ 1.48
MCF2L-230ENST00000491028 ERVV-2B6SEH9 535 aa24.32■■□□□ 1.48
MCF2L-230ENST00000491028 KRT27Q7Z3Y8 459 aa24.32■■□□□ 1.48
MCF2L-230ENST00000491028 IFT57Q9NWB7 429 aa24.31■■□□□ 1.48
MCF2L-230ENST00000491028 SLC52A2Q9HAB3 445 aa24.3■■□□□ 1.48
MCF2L-230ENST00000491028 NHSQ6T4R5 1651 aa24.3■■□□□ 1.48
MCF2L-230ENST00000491028 KDM3BQ7LBC6 1761 aa24.29■■□□□ 1.48
MCF2L-230ENST00000491028 E9PSI1 815 aa24.29■■□□□ 1.48
MCF2L-230ENST00000491028 GNAI1P63096 354 aa24.29■■□□□ 1.48
MCF2L-230ENST00000491028 BABAM1Q9NWV8 329 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms