RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 SLIT2O94813 1529 aa15.22■□□□□ 0.03
TRIM40-208ENST00000489892 PLCH1Q4KWH8 1693 aa15.22■□□□□ 0.03
TRIM40-208ENST00000489892 COL18A1P39060 1754 aa15.21■□□□□ 0.03
TRIM40-208ENST00000489892 GLI3P10071 1580 aa15.21■□□□□ 0.03
TRIM40-208ENST00000489892 SENP3-EIF4A1A0A087X0R7 540 aa15.21■□□□□ 0.03
TRIM40-208ENST00000489892 CSB-PGBD3P0DP91 1061 aa15.21■□□□□ 0.03
TRIM40-208ENST00000489892 RIPK4P57078 832 aa15.21■□□□□ 0.03
TRIM40-208ENST00000489892 CAMTA1Q9Y6Y1 1673 aa15.21■□□□□ 0.03
TRIM40-208ENST00000489892 NWD2Q9ULI1 1742 aa15.2■□□□□ 0.02
TRIM40-208ENST00000489892 NEUROD2Q15784 382 aa15.2■□□□□ 0.02
TRIM40-208ENST00000489892 AMOTQ4VCS5 1084 aa15.2■□□□□ 0.02
TRIM40-208ENST00000489892 AEBP1Q8IUX7 1158 aa15.2■□□□□ 0.02
TRIM40-208ENST00000489892 BRWD3Q6RI45 1802 aa15.2■□□□□ 0.02
TRIM40-208ENST00000489892 HTATSF1O43719 755 aaKnown RBP15.19■□□□□ 0.02
TRIM40-208ENST00000489892 RRP7AQ9Y3A4 280 aaKnown RBP15.19■□□□□ 0.02
TRIM40-208ENST00000489892 CCDC9Q9Y3X0 531 aaKnown RBP15.19■□□□□ 0.02
TRIM40-208ENST00000489892 LMO7Q8WWI1 1683 aa15.19■□□□□ 0.02
TRIM40-208ENST00000489892 COL14A1Q05707 1796 aaKnown RBP15.19■□□□□ 0.02
TRIM40-208ENST00000489892 RTF1Q92541 710 aaKnown RBP15.18■□□□□ 0.02
TRIM40-208ENST00000489892 WDR17Q8IZU2 1322 aa15.17■□□□□ 0.02
TRIM40-208ENST00000489892 SLFN5Q08AF3 891 aa15.17■□□□□ 0.02
TRIM40-208ENST00000489892 SF3B2Q13435 895 aaKnown RBP15.17■□□□□ 0.02
TRIM40-208ENST00000489892 PLEKHO1Q53GL0 409 aaPredicted RBP15.17■□□□□ 0.02
TRIM40-208ENST00000489892 NBPF6Q5VWK0 638 aa15.17■□□□□ 0.02
TRIM40-208ENST00000489892 RAPGEF4Q8WZA2 1011 aa15.17■□□□□ 0.02
TRIM40-208ENST00000489892 PHACTR3Q96KR7 559 aa15.17■□□□□ 0.02
TRIM40-208ENST00000489892 NBPF4Q96M43 638 aa15.17■□□□□ 0.02
TRIM40-208ENST00000489892 NLRP2Q9NX02 1062 aa15.17■□□□□ 0.02
TRIM40-208ENST00000489892 AXIN2Q9Y2T1 843 aa15.17■□□□□ 0.02
TRIM40-208ENST00000489892 COL5A2P05997 1499 aaPredicted RBP15.16■□□□□ 0.02
TRIM40-208ENST00000489892 EVA1CP58658 441 aa15.16■□□□□ 0.02
TRIM40-208ENST00000489892 CHRNA2Q15822 529 aa15.16■□□□□ 0.02
TRIM40-208ENST00000489892 DEFB132Q7Z7B7 95 aa15.16■□□□□ 0.02
TRIM40-208ENST00000489892 RGPD5Q99666 1765 aa15.16■□□□□ 0.02
TRIM40-208ENST00000489892 A0A0G2JS52 829 aa15.15■□□□□ 0.02
TRIM40-208ENST00000489892 CT47B1P0C2W7 299 aaPredicted RBP15.15■□□□□ 0.02
TRIM40-208ENST00000489892 VPS72Q15906 364 aa15.15■□□□□ 0.02
TRIM40-208ENST00000489892 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.15■□□□□ 0.02
TRIM40-208ENST00000489892 TRIM35Q9UPQ4 493 aa15.15■□□□□ 0.02
TRIM40-208ENST00000489892 PSDA5PKW4 1024 aaPredicted RBP15.14■□□□□ 0.01
TRIM40-208ENST00000489892 TATP17735 454 aaPredicted RBP15.14■□□□□ 0.01
TRIM40-208ENST00000489892 GNAI1P63096 354 aa15.14■□□□□ 0.01
TRIM40-208ENST00000489892 SEPT12Q8IYM1 358 aa15.14■□□□□ 0.01
TRIM40-208ENST00000489892 TRMT2AQ8IZ69 625 aaKnown RBP15.14■□□□□ 0.01
TRIM40-208ENST00000489892 TSHZ2Q9NRE2 1034 aa15.14■□□□□ 0.01
TRIM40-208ENST00000489892 MAP3K5Q99683 1374 aa15.13■□□□□ 0.01
TRIM40-208ENST00000489892 GNAT3A8MTJ3 354 aa15.13■□□□□ 0.01
TRIM40-208ENST00000489892 DUSP27Q5VZP5 1158 aa15.13■□□□□ 0.01
TRIM40-208ENST00000489892 TOM1L2Q6ZVM7 507 aa15.13■□□□□ 0.01
TRIM40-208ENST00000489892 CDCA7LQ96GN5 454 aa15.13■□□□□ 0.01
TRIM40-208ENST00000489892 CARD10Q9BWT7 1032 aa15.13■□□□□ 0.01
TRIM40-208ENST00000489892 IFT57Q9NWB7 429 aa15.13■□□□□ 0.01
TRIM40-208ENST00000489892 SPG7Q9UQ90 795 aa15.13■□□□□ 0.01
TRIM40-208ENST00000489892 FAM83GA6ND36 823 aa15.12■□□□□ 0.01
TRIM40-208ENST00000489892 MTHFSDQ2M296 383 aaKnown RBP15.12■□□□□ 0.01
TRIM40-208ENST00000489892 C1orf141Q5JVX7 400 aa15.12■□□□□ 0.01
TRIM40-208ENST00000489892 DLG5Q8TDM6 1919 aa15.11■□□□□ 0.01
TRIM40-208ENST00000489892 OVOS2A0A0G2JMS6 1433 aa15.11■□□□□ 0.01
TRIM40-208ENST00000489892 CRB1P82279 1406 aa15.11■□□□□ 0.01
TRIM40-208ENST00000489892 USHBP1Q8N6Y0 703 aa15.11■□□□□ 0.01
TRIM40-208ENST00000489892 RCAN3Q9UKA8 241 aa15.11■□□□□ 0.01
TRIM40-208ENST00000489892 RGPD2P0DJD1 1756 aa15.11■□□□□ 0.01
TRIM40-208ENST00000489892 NRAPQ86VF7 1730 aa15.1■□□□□ 0.01
TRIM40-208ENST00000489892 AKAP4Q5JQC9 854 aa15.1■□□□□ 0.01
TRIM40-208ENST00000489892 KRT27Q7Z3Y8 459 aa15.1■□□□□ 0.01
TRIM40-208ENST00000489892 BABAM1Q9NWV8 329 aa15.1■□□□□ 0.01
TRIM40-208ENST00000489892 PARP4Q9UKK3 1724 aaKnown RBP15.09■□□□□ 0.01
TRIM40-208ENST00000489892 HSP90AB1P08238 724 aaKnown RBP15.09■□□□□ 0.01
TRIM40-208ENST00000489892 ZNF530Q6P9A1 599 aaPredicted RBP15.09■□□□□ 0.01
TRIM40-208ENST00000489892 ZNF428Q96B54 188 aa15.09■□□□□ 0.01
TRIM40-208ENST00000489892 CFAP44Q96MT7 982 aa15.09■□□□□ 0.01
TRIM40-208ENST00000489892 BTG4Q9NY30 223 aa15.09■□□□□ 0.01
TRIM40-208ENST00000489892 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.08■□□□□ 0
TRIM40-208ENST00000489892 CDCA7Q9BWT1 371 aaPredicted RBP15.08■□□□□ 0
TRIM40-208ENST00000489892 STRN4Q9NRL3 753 aa15.08■□□□□ 0
TRIM40-208ENST00000489892 PPP4R2Q9NY27 417 aa15.08■□□□□ 0
TRIM40-208ENST00000489892 IL2RBP14784 551 aa15.07■□□□□ 0
TRIM40-208ENST00000489892 FANCIQ9NVI1 1328 aa15.07■□□□□ 0
TRIM40-208ENST00000489892 ONECUT3O60422 494 aaPredicted RBP15.06■□□□□ 0
TRIM40-208ENST00000489892 FAM98CQ17RN3 349 aaKnown RBP15.06■□□□□ 0
TRIM40-208ENST00000489892 THRAP3Q9Y2W1 955 aaKnown RBP15.06■□□□□ 0
TRIM40-208ENST00000489892 PKD1L3Q7Z443 1732 aa15.06■□□□□ 0
TRIM40-208ENST00000489892 ZNF853P0CG23 659 aa15.05■□□□□ -0
TRIM40-208ENST00000489892 BAG6P46379 1132 aa15.05■□□□□ -0
TRIM40-208ENST00000489892 CHMP4AQ9BY43 222 aa15.05■□□□□ -0
TRIM40-208ENST00000489892 PCDH11XQ9BZA7 1347 aa15.05■□□□□ -0
TRIM40-208ENST00000489892 PCDH11YQ9BZA8 1340 aa15.05■□□□□ -0
TRIM40-208ENST00000489892 LRRC37A3O60309 1634 aa15.05■□□□□ -0
TRIM40-208ENST00000489892 MEGF6O75095 1541 aa15.04■□□□□ -0
TRIM40-208ENST00000489892 CEMIPQ8WUJ3 1361 aa15.04■□□□□ -0
TRIM40-208ENST00000489892 SOS1Q07889 1333 aaPredicted RBP15.04■□□□□ -0
TRIM40-208ENST00000489892 LARP1Q6PKG0 1096 aaKnown RBP15.04■□□□□ -0
TRIM40-208ENST00000489892 IFNL2Q8IZJ0 200 aa15.04■□□□□ -0
TRIM40-208ENST00000489892 SPINK5Q9NQ38 1064 aaPredicted RBP15.04■□□□□ -0
TRIM40-208ENST00000489892 RNF123Q5XPI4 1314 aa15.03■□□□□ -0
TRIM40-208ENST00000489892 CHL1O00533 1208 aa15.03■□□□□ -0
TRIM40-208ENST00000489892 C1QTNF8P60827 252 aa15.03■□□□□ -0
TRIM40-208ENST00000489892 TEFQ10587 303 aa15.03■□□□□ -0
TRIM40-208ENST00000489892 MCM10Q7L590 875 aa15.03■□□□□ -0
TRIM40-208ENST00000489892 LAS1LQ9Y4W2 734 aaKnown RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms