RNA–Protein interactions for RNA: ENST00000489676.1

TFF3-203, Transcript of trefoil factor 3, humanhuman

TSL 2

Gene TFF3, Length 419 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3-203ENST00000489676 UPF1Q92900 1129 aaKnown RBP eCLIP14.5□□□□□ -0.09
TFF3-203ENST00000489676 QTRT2Q9H974 415 aaKnown RBP14.5□□□□□ -0.09
TFF3-203ENST00000489676 USP35Q9P2H5 1018 aa14.5□□□□□ -0.09
TFF3-203ENST00000489676 ADAMTS7Q9UKP4 1686 aa14.49□□□□□ -0.09
TFF3-203ENST00000489676 DLG5Q8TDM6 1919 aa14.49□□□□□ -0.09
TFF3-203ENST00000489676 IL2RBP14784 551 aa14.49□□□□□ -0.09
TFF3-203ENST00000489676 RAPGEF4Q8WZA2 1011 aa14.49□□□□□ -0.09
TFF3-203ENST00000489676 PHACTR3Q96KR7 559 aa14.49□□□□□ -0.09
TFF3-203ENST00000489676 CCDC9Q9Y3X0 531 aaKnown RBP14.49□□□□□ -0.09
TFF3-203ENST00000489676 EP400Q96L91 3159 aa14.48□□□□□ -0.09
TFF3-203ENST00000489676 ONECUT3O60422 494 aaPredicted RBP14.48□□□□□ -0.09
TFF3-203ENST00000489676 CCDC146Q8IYE0 955 aa14.48□□□□□ -0.09
TFF3-203ENST00000489676 RUNDC1Q96C34 613 aa14.48□□□□□ -0.09
TFF3-203ENST00000489676 TATP17735 454 aaPredicted RBP14.47□□□□□ -0.09
TFF3-203ENST00000489676 FAM98CQ17RN3 349 aaKnown RBP14.47□□□□□ -0.09
TFF3-203ENST00000489676 CDCA7Q9BWT1 371 aaPredicted RBP14.47□□□□□ -0.09
TFF3-203ENST00000489676 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.47□□□□□ -0.09
TFF3-203ENST00000489676 BRWD3Q6RI45 1802 aa14.47□□□□□ -0.09
TFF3-203ENST00000489676 RGS12O14924 1447 aa14.47□□□□□ -0.09
TFF3-203ENST00000489676 RBM6P78332 1123 aaKnown RBP14.46□□□□□ -0.09
TFF3-203ENST00000489676 MTHFSDQ2M296 383 aaKnown RBP14.45□□□□□ -0.1
TFF3-203ENST00000489676 AMOTQ4VCS5 1084 aa14.45□□□□□ -0.1
TFF3-203ENST00000489676 PNNQ9H307 717 aaKnown RBP14.45□□□□□ -0.1
TFF3-203ENST00000489676 TOGARAM1Q9Y4F4 1720 aa14.45□□□□□ -0.1
TFF3-203ENST00000489676 VIRMAQ69YN4 1812 aaKnown RBP14.45□□□□□ -0.1
TFF3-203ENST00000489676 MAPK8IP3Q9UPT6 1336 aa14.44□□□□□ -0.1
TFF3-203ENST00000489676 ZCRB1Q8TBF4 217 aaKnown RBP14.44□□□□□ -0.1
TFF3-203ENST00000489676 PCDH11XQ9BZA7 1347 aa14.43□□□□□ -0.1
TFF3-203ENST00000489676 PCDH11YQ9BZA8 1340 aa14.43□□□□□ -0.1
TFF3-203ENST00000489676 SCN11AQ9UI33 1791 aa14.43□□□□□ -0.1
TFF3-203ENST00000489676 APAF1O14727 1248 aa14.43□□□□□ -0.1
TFF3-203ENST00000489676 CYP27B1O15528 508 aa14.43□□□□□ -0.1
TFF3-203ENST00000489676 NFE2L2Q16236 605 aa14.43□□□□□ -0.1
TFF3-203ENST00000489676 PLEKHO1Q53GL0 409 aaPredicted RBP14.43□□□□□ -0.1
TFF3-203ENST00000489676 GAS2L2Q8NHY3 880 aa14.43□□□□□ -0.1
TFF3-203ENST00000489676 MAP3K5Q99683 1374 aa14.43□□□□□ -0.1
TFF3-203ENST00000489676 MRC1P22897 1456 aa14.43□□□□□ -0.1
TFF3-203ENST00000489676 KDM6AO15550 1401 aaPredicted RBP14.42□□□□□ -0.1
TFF3-203ENST00000489676 TMPOP42166 694 aaKnown RBP14.42□□□□□ -0.1
TFF3-203ENST00000489676 ZNF530Q6P9A1 599 aaPredicted RBP14.42□□□□□ -0.1
TFF3-203ENST00000489676 SPG7Q9UQ90 795 aa14.42□□□□□ -0.1
TFF3-203ENST00000489676 DOT1LQ8TEK3 1739 aa14.41□□□□□ -0.1
TFF3-203ENST00000489676 PHKG2P15735 406 aa14.41□□□□□ -0.1
TFF3-203ENST00000489676 RXRBP28702 533 aa14.41□□□□□ -0.1
TFF3-203ENST00000489676 DDB1Q16531 1140 aa14.41□□□□□ -0.1
TFF3-203ENST00000489676 SEPT12Q8IYM1 358 aa14.41□□□□□ -0.1
TFF3-203ENST00000489676 SIPA1L3O60292 1781 aaPredicted RBP14.41□□□□□ -0.1
TFF3-203ENST00000489676 BCL9O00512 1426 aa14.41□□□□□ -0.1
TFF3-203ENST00000489676 NCBP3Q53F19 620 aaKnown RBP14.4□□□□□ -0.1
TFF3-203ENST00000489676 CEMIPQ8WUJ3 1361 aa14.39□□□□□ -0.11
TFF3-203ENST00000489676 EXOC5O00471 708 aa14.39□□□□□ -0.11
TFF3-203ENST00000489676 NEFMP07197 916 aa14.39□□□□□ -0.11
TFF3-203ENST00000489676 NKX1-1Q15270 411 aaPredicted RBP14.39□□□□□ -0.11
TFF3-203ENST00000489676 AKAP4Q5JQC9 854 aa14.39□□□□□ -0.11
TFF3-203ENST00000489676 MARCH10Q8NA82 808 aaPredicted RBP14.39□□□□□ -0.11
TFF3-203ENST00000489676 TRIM35Q9UPQ4 493 aa14.39□□□□□ -0.11
TFF3-203ENST00000489676 RRP7AQ9Y3A4 280 aaKnown RBP14.39□□□□□ -0.11
TFF3-203ENST00000489676 ZNF521Q96K83 1311 aa14.39□□□□□ -0.11
TFF3-203ENST00000489676 CCDC27Q2M243 656 aa14.38□□□□□ -0.11
TFF3-203ENST00000489676 IFNL2Q8IZJ0 200 aa14.38□□□□□ -0.11
TFF3-203ENST00000489676 NHSQ6T4R5 1651 aa14.38□□□□□ -0.11
TFF3-203ENST00000489676 SBF2Q86WG5 1849 aa14.37□□□□□ -0.11
TFF3-203ENST00000489676 GNAT3A8MTJ3 354 aa14.37□□□□□ -0.11
TFF3-203ENST00000489676 HTATSF1O43719 755 aaKnown RBP14.37□□□□□ -0.11
TFF3-203ENST00000489676 ITGB4P16144 1822 aa14.36□□□□□ -0.11
TFF3-203ENST00000489676 SENP3-EIF4A1A0A087X0R7 540 aa14.36□□□□□ -0.11
TFF3-203ENST00000489676 A0A0G2JS52 829 aa14.36□□□□□ -0.11
TFF3-203ENST00000489676 RIPK4P57078 832 aa14.36□□□□□ -0.11
TFF3-203ENST00000489676 MYT1Q01538 1121 aa14.36□□□□□ -0.11
TFF3-203ENST00000489676 C1orf141Q5JVX7 400 aa14.36□□□□□ -0.11
TFF3-203ENST00000489676 NGEFQ8N5V2 710 aa14.36□□□□□ -0.11
TFF3-203ENST00000489676 DDX54Q8TDD1 881 aaKnown RBP14.36□□□□□ -0.11
TFF3-203ENST00000489676 PAPPAQ13219 1627 aa14.36□□□□□ -0.11
TFF3-203ENST00000489676 RNMTO43148 476 aaKnown RBP14.35□□□□□ -0.11
TFF3-203ENST00000489676 NEUROD2Q15784 382 aa14.35□□□□□ -0.11
TFF3-203ENST00000489676 IL17REQ8NFR9 667 aa14.35□□□□□ -0.11
TFF3-203ENST00000489676 DCAF5Q96JK2 942 aa14.35□□□□□ -0.11
TFF3-203ENST00000489676 HSP90AB1P08238 724 aaKnown RBP14.34□□□□□ -0.11
TFF3-203ENST00000489676 HNRNPUQ00839 825 aaKnown RBP eCLIP14.34□□□□□ -0.11
TFF3-203ENST00000489676 LMOD3Q0VAK6 560 aa14.34□□□□□ -0.11
TFF3-203ENST00000489676 DCTN1Q14203 1278 aa14.34□□□□□ -0.11
TFF3-203ENST00000489676 MPRIPQ6WCQ1 1025 aa14.34□□□□□ -0.11
TFF3-203ENST00000489676 WWC1Q8IX03 1113 aa14.34□□□□□ -0.11
TFF3-203ENST00000489676 ZBED9Q6R2W3 1325 aa14.34□□□□□ -0.11
TFF3-203ENST00000489676 KDM3BQ7LBC6 1761 aa14.34□□□□□ -0.11
TFF3-203ENST00000489676 PDE3BQ13370 1112 aa14.33□□□□□ -0.12
TFF3-203ENST00000489676 MCM10Q7L590 875 aa14.33□□□□□ -0.12
TFF3-203ENST00000489676 KRT27Q7Z3Y8 459 aa14.33□□□□□ -0.12
TFF3-203ENST00000489676 THUMPD2Q9BTF0 503 aaKnown RBP14.33□□□□□ -0.12
TFF3-203ENST00000489676 LGR6Q9HBX8 967 aa14.33□□□□□ -0.12
TFF3-203ENST00000489676 UBR2Q8IWV8 1755 aa14.32□□□□□ -0.12
TFF3-203ENST00000489676 RTF1Q92541 710 aaKnown RBP14.31□□□□□ -0.12
TFF3-203ENST00000489676 SALL2Q9Y467 1007 aaPredicted RBP14.31□□□□□ -0.12
TFF3-203ENST00000489676 TNS1Q9HBL0 1735 aaKnown RBP14.3□□□□□ -0.12
TFF3-203ENST00000489676 BTAF1O14981 1849 aa14.3□□□□□ -0.12
TFF3-203ENST00000489676 ERVV-2B6SEH9 535 aa14.3□□□□□ -0.12
TFF3-203ENST00000489676 FAM182BQ5T319 152 aa14.3□□□□□ -0.12
TFF3-203ENST00000489676 SLC52A2Q9HAB3 445 aa14.3□□□□□ -0.12
TFF3-203ENST00000489676 IL16Q14005 1332 aa14.3□□□□□ -0.12
TFF3-203ENST00000489676 ZNF853P0CG23 659 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms