RNA–Protein interactions for RNA: ENST00000489656.5

VPS26A-205, Transcript of VPS26, retromer complex component A, humanhuman

TSL 5

Gene VPS26A, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26A-205ENST00000489656 GAS2L2Q8NHY3 880 aa18.54■□□□□ 0.56
VPS26A-205ENST00000489656 DUSP27Q5VZP5 1158 aa18.53■□□□□ 0.56
VPS26A-205ENST00000489656 SCN11AQ9UI33 1791 aa18.53■□□□□ 0.56
VPS26A-205ENST00000489656 CACNB1Q02641 598 aaPredicted RBP18.52■□□□□ 0.56
VPS26A-205ENST00000489656 SHANK3Q9BYB0 1731 aa18.52■□□□□ 0.55
VPS26A-205ENST00000489656 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.52■□□□□ 0.55
VPS26A-205ENST00000489656 HTATSF1O43719 755 aaKnown RBP18.51■□□□□ 0.55
VPS26A-205ENST00000489656 CSB-PGBD3P0DP91 1061 aa18.51■□□□□ 0.55
VPS26A-205ENST00000489656 CALD1Q05682 793 aaKnown RBP18.51■□□□□ 0.55
VPS26A-205ENST00000489656 MTHFSDQ2M296 383 aaKnown RBP18.51■□□□□ 0.55
VPS26A-205ENST00000489656 SPINK5Q9NQ38 1064 aaPredicted RBP18.51■□□□□ 0.55
VPS26A-205ENST00000489656 SIPA1L3O60292 1781 aaPredicted RBP18.5■□□□□ 0.55
VPS26A-205ENST00000489656 NLRP2Q9NX02 1062 aa18.5■□□□□ 0.55
VPS26A-205ENST00000489656 SPATA31A6Q5VVP1 1343 aa18.49■□□□□ 0.55
VPS26A-205ENST00000489656 CRB1P82279 1406 aa18.49■□□□□ 0.55
VPS26A-205ENST00000489656 MEGF6O75095 1541 aa18.49■□□□□ 0.55
VPS26A-205ENST00000489656 ZBTB22O15209 634 aa18.49■□□□□ 0.55
VPS26A-205ENST00000489656 AMOTQ4VCS5 1084 aa18.49■□□□□ 0.55
VPS26A-205ENST00000489656 CARD10Q9BWT7 1032 aa18.49■□□□□ 0.55
VPS26A-205ENST00000489656 SLIT2O94813 1529 aa18.49■□□□□ 0.55
VPS26A-205ENST00000489656 MAP3K5Q99683 1374 aa18.48■□□□□ 0.55
VPS26A-205ENST00000489656 PLEKHO1Q53GL0 409 aaPredicted RBP18.48■□□□□ 0.55
VPS26A-205ENST00000489656 MYH16Q9H6N6 1097 aa18.48■□□□□ 0.55
VPS26A-205ENST00000489656 BTG4Q9NY30 223 aa18.47■□□□□ 0.55
VPS26A-205ENST00000489656 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.47■□□□□ 0.55
VPS26A-205ENST00000489656 OVOS2A0A0G2JMS6 1433 aa18.47■□□□□ 0.55
VPS26A-205ENST00000489656 GNAT3A8MTJ3 354 aa18.46■□□□□ 0.55
VPS26A-205ENST00000489656 TOM1L2Q6ZVM7 507 aa18.46■□□□□ 0.55
VPS26A-205ENST00000489656 RAPGEF4Q8WZA2 1011 aa18.46■□□□□ 0.55
VPS26A-205ENST00000489656 TATP17735 454 aaPredicted RBP18.45■□□□□ 0.54
VPS26A-205ENST00000489656 HSPA1LP34931 641 aa18.45■□□□□ 0.54
VPS26A-205ENST00000489656 EVA1CP58658 441 aa18.45■□□□□ 0.54
VPS26A-205ENST00000489656 IFT57Q9NWB7 429 aa18.45■□□□□ 0.54
VPS26A-205ENST00000489656 LRP6O75581 1613 aa18.45■□□□□ 0.54
VPS26A-205ENST00000489656 KDM3BQ7LBC6 1761 aa18.45■□□□□ 0.54
VPS26A-205ENST00000489656 ZNF853P0CG23 659 aa18.44■□□□□ 0.54
VPS26A-205ENST00000489656 LARP1Q6PKG0 1096 aaKnown RBP18.44■□□□□ 0.54
VPS26A-205ENST00000489656 FOXD4L1Q9NU39 408 aa18.44■□□□□ 0.54
VPS26A-205ENST00000489656 ADAMTS2O95450 1211 aa18.43■□□□□ 0.54
VPS26A-205ENST00000489656 GNAI1P63096 354 aa18.43■□□□□ 0.54
VPS26A-205ENST00000489656 AKAP4Q5JQC9 854 aa18.43■□□□□ 0.54
VPS26A-205ENST00000489656 RTF1Q92541 710 aaKnown RBP18.43■□□□□ 0.54
VPS26A-205ENST00000489656 STRN4Q9NRL3 753 aa18.43■□□□□ 0.54
VPS26A-205ENST00000489656 FANCIQ9NVI1 1328 aa18.43■□□□□ 0.54
VPS26A-205ENST00000489656 CEMIPQ8WUJ3 1361 aa18.42■□□□□ 0.54
VPS26A-205ENST00000489656 NUTM2BA6NNL0 878 aaPredicted RBP18.42■□□□□ 0.54
VPS26A-205ENST00000489656 NUTM2EB1AL46 878 aaPredicted RBP18.42■□□□□ 0.54
VPS26A-205ENST00000489656 ZNF530Q6P9A1 599 aaPredicted RBP18.42■□□□□ 0.54
VPS26A-205ENST00000489656 NUTM2AQ8IVF1 878 aaPredicted RBP18.42■□□□□ 0.54
VPS26A-205ENST00000489656 CFAP44Q96MT7 982 aa18.42■□□□□ 0.54
VPS26A-205ENST00000489656 RNF123Q5XPI4 1314 aa18.42■□□□□ 0.54
VPS26A-205ENST00000489656 DISP2A7MBM2 1401 aa18.41■□□□□ 0.54
VPS26A-205ENST00000489656 SLC4A2P04920 1241 aa18.41■□□□□ 0.54
VPS26A-205ENST00000489656 THUMPD2Q9BTF0 503 aaKnown RBP18.41■□□□□ 0.54
VPS26A-205ENST00000489656 RCAN3Q9UKA8 241 aa18.41■□□□□ 0.54
VPS26A-205ENST00000489656 SPG7Q9UQ90 795 aa18.41■□□□□ 0.54
VPS26A-205ENST00000489656 CACNA1FO60840 1977 aa18.41■□□□□ 0.54
VPS26A-205ENST00000489656 CT47B1P0C2W7 299 aaPredicted RBP18.4■□□□□ 0.54
VPS26A-205ENST00000489656 DCTN1Q14203 1278 aa18.4■□□□□ 0.54
VPS26A-205ENST00000489656 MCM10Q7L590 875 aa18.4■□□□□ 0.54
VPS26A-205ENST00000489656 IL2RBP14784 551 aa18.39■□□□□ 0.53
VPS26A-205ENST00000489656 C1orf141Q5JVX7 400 aa18.39■□□□□ 0.53
VPS26A-205ENST00000489656 SUPT16HQ9Y5B9 1047 aaKnown RBP18.39■□□□□ 0.53
VPS26A-205ENST00000489656 IL17REQ8NFR9 667 aa18.38■□□□□ 0.53
VPS26A-205ENST00000489656 BABAM1Q9NWV8 329 aa18.38■□□□□ 0.53
VPS26A-205ENST00000489656 MRC1P22897 1456 aa18.38■□□□□ 0.53
VPS26A-205ENST00000489656 CHL1O00533 1208 aa18.37■□□□□ 0.53
VPS26A-205ENST00000489656 FNBP4Q8N3X1 1017 aaPredicted RBP18.37■□□□□ 0.53
VPS26A-205ENST00000489656 TSR2Q969E8 191 aaKnown RBP18.37■□□□□ 0.53
VPS26A-205ENST00000489656 BCL9LQ86UU0 1499 aa18.37■□□□□ 0.53
VPS26A-205ENST00000489656 IFNL2Q8IZJ0 200 aa18.36■□□□□ 0.53
VPS26A-205ENST00000489656 MBIPQ9NS73 344 aa18.36■□□□□ 0.53
VPS26A-205ENST00000489656 THRAP3Q9Y2W1 955 aaKnown RBP18.36■□□□□ 0.53
VPS26A-205ENST00000489656 TOGARAM1Q9Y4F4 1720 aa18.35■□□□□ 0.53
VPS26A-205ENST00000489656 SPATA31A1Q5TZJ5 1347 aa18.35■□□□□ 0.53
VPS26A-205ENST00000489656 PCDH11XQ9BZA7 1347 aa18.35■□□□□ 0.53
VPS26A-205ENST00000489656 PCDH11YQ9BZA8 1340 aa18.35■□□□□ 0.53
VPS26A-205ENST00000489656 PHKG2P15735 406 aa18.35■□□□□ 0.53
VPS26A-205ENST00000489656 ITGB4P16144 1822 aa18.35■□□□□ 0.53
VPS26A-205ENST00000489656 KDM6AO15550 1401 aaPredicted RBP18.34■□□□□ 0.53
VPS26A-205ENST00000489656 SPATA31A5Q5VU36 1347 aa18.34■□□□□ 0.53
VPS26A-205ENST00000489656 SPATA31A7Q8IWB4 1347 aa18.34■□□□□ 0.53
VPS26A-205ENST00000489656 RNMTO43148 476 aaKnown RBP18.34■□□□□ 0.53
VPS26A-205ENST00000489656 HSP90AB1P08238 724 aaKnown RBP18.34■□□□□ 0.53
VPS26A-205ENST00000489656 EXOSC9Q06265 439 aaKnown RBP18.34■□□□□ 0.53
VPS26A-205ENST00000489656 UNC5CLQ8IV45 518 aa18.34■□□□□ 0.53
VPS26A-205ENST00000489656 ZCRB1Q8TBF4 217 aaKnown RBP18.34■□□□□ 0.53
VPS26A-205ENST00000489656 CDCA7Q9BWT1 371 aaPredicted RBP18.34■□□□□ 0.53
VPS26A-205ENST00000489656 CYP27B1O15528 508 aa18.33■□□□□ 0.52
VPS26A-205ENST00000489656 TAF7Q15545 349 aaPredicted RBP18.33■□□□□ 0.52
VPS26A-205ENST00000489656 LAS1LQ9Y4W2 734 aaKnown RBP18.33■□□□□ 0.52
VPS26A-205ENST00000489656 TNS2Q63HR2 1409 aa18.32■□□□□ 0.52
VPS26A-205ENST00000489656 ZNF428Q96B54 188 aa18.32■□□□□ 0.52
VPS26A-205ENST00000489656 NGLY1Q96IV0 654 aa18.32■□□□□ 0.52
VPS26A-205ENST00000489656 LGR6Q9HBX8 967 aa18.32■□□□□ 0.52
VPS26A-205ENST00000489656 PAPPAQ13219 1627 aa18.31■□□□□ 0.52
VPS26A-205ENST00000489656 NKX1-1Q15270 411 aaPredicted RBP18.31■□□□□ 0.52
VPS26A-205ENST00000489656 VPS72Q15906 364 aa18.31■□□□□ 0.52
VPS26A-205ENST00000489656 MPRIPQ6WCQ1 1025 aa18.31■□□□□ 0.52
VPS26A-205ENST00000489656 C8orf37Q96NL8 207 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms