RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 CRB1P82279 1406 aa15□□□□□ -0.01
C9orf3-220ENST00000489318 FAM83GA6ND36 823 aa15□□□□□ -0.01
C9orf3-220ENST00000489318 MYH16Q9H6N6 1097 aa15□□□□□ -0.01
C9orf3-220ENST00000489318 SLIT2O94813 1529 aa15□□□□□ -0.01
C9orf3-220ENST00000489318 KDM3BQ7LBC6 1761 aa15□□□□□ -0.01
C9orf3-220ENST00000489318 FANCIQ9NVI1 1328 aa14.99□□□□□ -0.01
C9orf3-220ENST00000489318 ZNF853P0CG23 659 aa14.99□□□□□ -0.01
C9orf3-220ENST00000489318 AMOTQ4VCS5 1084 aa14.99□□□□□ -0.01
C9orf3-220ENST00000489318 CEMIPQ8WUJ3 1361 aa14.98□□□□□ -0.01
C9orf3-220ENST00000489318 IFT57Q9NWB7 429 aa14.98□□□□□ -0.01
C9orf3-220ENST00000489318 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.98□□□□□ -0.014e-7■■■□□ 17.9
C9orf3-220ENST00000489318 MRC1P22897 1456 aa14.97□□□□□ -0.01
C9orf3-220ENST00000489318 LRP6O75581 1613 aa14.97□□□□□ -0.01
C9orf3-220ENST00000489318 CARD10Q9BWT7 1032 aa14.97□□□□□ -0.01
C9orf3-220ENST00000489318 NLRP2Q9NX02 1062 aa14.97□□□□□ -0.01
C9orf3-220ENST00000489318 RCAN3Q9UKA8 241 aa14.97□□□□□ -0.01
C9orf3-220ENST00000489318 DISP2A7MBM2 1401 aa14.97□□□□□ -0.01
C9orf3-220ENST00000489318 SPATA31A6Q5VVP1 1343 aa14.96□□□□□ -0.01
C9orf3-220ENST00000489318 GNAT3A8MTJ3 354 aa14.96□□□□□ -0.01
C9orf3-220ENST00000489318 CT47B1P0C2W7 299 aaPredicted RBP14.96□□□□□ -0.01
C9orf3-220ENST00000489318 CSB-PGBD3P0DP91 1061 aa14.96□□□□□ -0.01
C9orf3-220ENST00000489318 PLEKHO1Q53GL0 409 aaPredicted RBP14.96□□□□□ -0.01
C9orf3-220ENST00000489318 SUPT16HQ9Y5B9 1047 aaKnown RBP14.96□□□□□ -0.01
C9orf3-220ENST00000489318 GNAI1P63096 354 aa14.95□□□□□ -0.02
C9orf3-220ENST00000489318 CFAP44Q96MT7 982 aa14.95□□□□□ -0.02
C9orf3-220ENST00000489318 THUMPD2Q9BTF0 503 aaKnown RBP14.95□□□□□ -0.02
C9orf3-220ENST00000489318 AKAP4Q5JQC9 854 aa14.94□□□□□ -0.02
C9orf3-220ENST00000489318 RAPGEF4Q8WZA2 1011 aa14.94□□□□□ -0.02
C9orf3-220ENST00000489318 BTG4Q9NY30 223 aa14.94□□□□□ -0.02
C9orf3-220ENST00000489318 GTF3C3Q9Y5Q9 886 aa14.94□□□□□ -0.02
C9orf3-220ENST00000489318 TATP17735 454 aaPredicted RBP14.93□□□□□ -0.02
C9orf3-220ENST00000489318 DCTN1Q14203 1278 aa14.93□□□□□ -0.02
C9orf3-220ENST00000489318 LARP1Q6PKG0 1096 aaKnown RBP14.93□□□□□ -0.02
C9orf3-220ENST00000489318 TOM1L2Q6ZVM7 507 aa14.93□□□□□ -0.02
C9orf3-220ENST00000489318 MCM10Q7L590 875 aa14.93□□□□□ -0.02
C9orf3-220ENST00000489318 RTF1Q92541 710 aaKnown RBP14.93□□□□□ -0.02
C9orf3-220ENST00000489318 TSR2Q969E8 191 aaKnown RBP14.93□□□□□ -0.02
C9orf3-220ENST00000489318 ZNF530Q6P9A1 599 aaPredicted RBP14.92□□□□□ -0.02
C9orf3-220ENST00000489318 KDM6AO15550 1401 aaPredicted RBP14.92□□□□□ -0.02
C9orf3-220ENST00000489318 CHL1O00533 1208 aa14.91□□□□□ -0.02
C9orf3-220ENST00000489318 RRP1P56182 461 aaKnown RBP14.91□□□□□ -0.02
C9orf3-220ENST00000489318 IL17REQ8NFR9 667 aa14.91□□□□□ -0.02
C9orf3-220ENST00000489318 MBIPQ9NS73 344 aa14.91□□□□□ -0.02
C9orf3-220ENST00000489318 BABAM1Q9NWV8 329 aa14.91□□□□□ -0.02
C9orf3-220ENST00000489318 TOGARAM1Q9Y4F4 1720 aa14.91□□□□□ -0.02
C9orf3-220ENST00000489318 PAPPAQ13219 1627 aa14.91□□□□□ -0.02
C9orf3-220ENST00000489318 STRN4Q9NRL3 753 aa14.9□□□□□ -0.02
C9orf3-220ENST00000489318 SPG7Q9UQ90 795 aa14.9□□□□□ -0.02
C9orf3-220ENST00000489318 BCL9LQ86UU0 1499 aa14.89□□□□□ -0.03
C9orf3-220ENST00000489318 IL2RBP14784 551 aa14.89□□□□□ -0.03
C9orf3-220ENST00000489318 HSPA1LP34931 641 aa14.89□□□□□ -0.03
C9orf3-220ENST00000489318 EVA1CP58658 441 aa14.89□□□□□ -0.03
C9orf3-220ENST00000489318 EXOSC9Q06265 439 aaKnown RBP14.89□□□□□ -0.03
C9orf3-220ENST00000489318 ZNF428Q96B54 188 aa14.89□□□□□ -0.03
C9orf3-220ENST00000489318 ADAMTS2O95450 1211 aa14.88□□□□□ -0.03
C9orf3-220ENST00000489318 NEFLP07196 543 aa14.88□□□□□ -0.03
C9orf3-220ENST00000489318 PHKG2P15735 406 aa14.88□□□□□ -0.03
C9orf3-220ENST00000489318 C1orf141Q5JVX7 400 aa14.88□□□□□ -0.03
C9orf3-220ENST00000489318 TNS2Q63HR2 1409 aa14.88□□□□□ -0.03
C9orf3-220ENST00000489318 PCDH11XQ9BZA7 1347 aa14.88□□□□□ -0.03
C9orf3-220ENST00000489318 PCDH11YQ9BZA8 1340 aa14.88□□□□□ -0.03
C9orf3-220ENST00000489318 ERICH6BQ5W0A0 696 aa14.87□□□□□ -0.03
C9orf3-220ENST00000489318 IFNL2Q8IZJ0 200 aa14.87□□□□□ -0.03
C9orf3-220ENST00000489318 UBR2Q8IWV8 1755 aa14.87□□□□□ -0.03
C9orf3-220ENST00000489318 THSD7AQ9UPZ6 1657 aa14.87□□□□□ -0.03
C9orf3-220ENST00000489318 GLI3P10071 1580 aa14.86□□□□□ -0.03
C9orf3-220ENST00000489318 NUTM2BA6NNL0 878 aaPredicted RBP14.86□□□□□ -0.03
C9orf3-220ENST00000489318 NUTM2EB1AL46 878 aaPredicted RBP14.86□□□□□ -0.03
C9orf3-220ENST00000489318 CYP27B1O15528 508 aa14.86□□□□□ -0.03
C9orf3-220ENST00000489318 RNMTO43148 476 aaKnown RBP14.86□□□□□ -0.03
C9orf3-220ENST00000489318 RARSP54136 660 aaKnown RBP14.86□□□□□ -0.03
C9orf3-220ENST00000489318 NUTM2AQ8IVF1 878 aaPredicted RBP14.86□□□□□ -0.03
C9orf3-220ENST00000489318 THRAP3Q9Y2W1 955 aaKnown RBP14.86□□□□□ -0.03
C9orf3-220ENST00000489318 SPATA31A1Q5TZJ5 1347 aa14.86□□□□□ -0.03
C9orf3-220ENST00000489318 HSP90AB1P08238 724 aaKnown RBP14.85□□□□□ -0.03
C9orf3-220ENST00000489318 FNBP4Q8N3X1 1017 aaPredicted RBP14.85□□□□□ -0.03
C9orf3-220ENST00000489318 CACNA1FO60840 1977 aa14.85□□□□□ -0.03
C9orf3-220ENST00000489318 SOS1Q07889 1333 aaPredicted RBP14.85□□□□□ -0.03
C9orf3-220ENST00000489318 SPATA31A5Q5VU36 1347 aa14.85□□□□□ -0.03
C9orf3-220ENST00000489318 SPATA31A7Q8IWB4 1347 aa14.85□□□□□ -0.03
C9orf3-220ENST00000489318 LAMB4A4D0S4 1761 aa14.84□□□□□ -0.03
C9orf3-220ENST00000489318 BRPF1P55201 1214 aaPredicted RBP14.84□□□□□ -0.03
C9orf3-220ENST00000489318 NKX1-1Q15270 411 aaPredicted RBP14.84□□□□□ -0.03
C9orf3-220ENST00000489318 TAF7Q15545 349 aaPredicted RBP14.84□□□□□ -0.03
C9orf3-220ENST00000489318 ALDH1L2Q3SY69 923 aa14.84□□□□□ -0.03
C9orf3-220ENST00000489318 ZCRB1Q8TBF4 217 aaKnown RBP14.84□□□□□ -0.03
C9orf3-220ENST00000489318 DCAF5Q96JK2 942 aa14.84□□□□□ -0.03
C9orf3-220ENST00000489318 CDCA7Q9BWT1 371 aaPredicted RBP14.84□□□□□ -0.03
C9orf3-220ENST00000489318 LGR6Q9HBX8 967 aa14.84□□□□□ -0.03
C9orf3-220ENST00000489318 LAS1LQ9Y4W2 734 aaKnown RBP14.84□□□□□ -0.03
C9orf3-220ENST00000489318 ITGB4P16144 1822 aa14.83□□□□□ -0.04
C9orf3-220ENST00000489318 VAMP4O75379 141 aa14.83□□□□□ -0.04
C9orf3-220ENST00000489318 FKBP8Q14318 412 aa14.83□□□□□ -0.04
C9orf3-220ENST00000489318 MPRIPQ6WCQ1 1025 aa14.83□□□□□ -0.04
C9orf3-220ENST00000489318 UNC5CLQ8IV45 518 aa14.83□□□□□ -0.04
C9orf3-220ENST00000489318 TSPYL4Q9UJ04 414 aa14.83□□□□□ -0.04
C9orf3-220ENST00000489318 DOT1LQ8TEK3 1739 aa14.83□□□□□ -0.04
C9orf3-220ENST00000489318 C5P01031 1676 aa14.82□□□□□ -0.04
C9orf3-220ENST00000489318 TWISTNBQ3B726 338 aaPredicted RBP14.82□□□□□ -0.04
C9orf3-220ENST00000489318 BARGINQ6ZT62 677 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms