RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 MRC1P22897 1456 aa14.04□□□□□ -0.16
USP11-209ENST00000488848 BCL9LQ86UU0 1499 aa14.04□□□□□ -0.16
USP11-209ENST00000488848 MTHFSDQ2M296 383 aaKnown RBP14.03□□□□□ -0.16
USP11-209ENST00000488848 DUSP27Q5VZP5 1158 aa14.03□□□□□ -0.16
USP11-209ENST00000488848 LTV1Q96GA3 475 aaPredicted RBP14.03□□□□□ -0.16
USP11-209ENST00000488848 BTG4Q9NY30 223 aa14.03□□□□□ -0.16
USP11-209ENST00000488848 SIPA1L3O60292 1781 aaPredicted RBP14.03□□□□□ -0.16
USP11-209ENST00000488848 ZNF853P0CG23 659 aa14.02□□□□□ -0.17
USP11-209ENST00000488848 PLEKHO1Q53GL0 409 aaPredicted RBP14.02□□□□□ -0.17
USP11-209ENST00000488848 BABAM1Q9NWV8 329 aa14.02□□□□□ -0.17
USP11-209ENST00000488848 NLRP2Q9NX02 1062 aa14.02□□□□□ -0.17
USP11-209ENST00000488848 THRAP3Q9Y2W1 955 aaKnown RBP14.02□□□□□ -0.17
USP11-209ENST00000488848 VIRMAQ69YN4 1812 aaKnown RBP14.01□□□□□ -0.17
USP11-209ENST00000488848 SCN11AQ9UI33 1791 aa14.01□□□□□ -0.17
USP11-209ENST00000488848 ZBTB7CA1YPR0 619 aa14□□□□□ -0.17
USP11-209ENST00000488848 CT47B1P0C2W7 299 aaPredicted RBP14□□□□□ -0.17
USP11-209ENST00000488848 AKAP4Q5JQC9 854 aa14□□□□□ -0.17
USP11-209ENST00000488848 LARP1Q6PKG0 1096 aaKnown RBP14□□□□□ -0.17
USP11-209ENST00000488848 USHBP1Q8N6Y0 703 aa14□□□□□ -0.17
USP11-209ENST00000488848 RAPGEF4Q8WZA2 1011 aa14□□□□□ -0.17
USP11-209ENST00000488848 CDCA7Q9BWT1 371 aaPredicted RBP14□□□□□ -0.17
USP11-209ENST00000488848 IFT57Q9NWB7 429 aa14□□□□□ -0.17
USP11-209ENST00000488848 RRP7AQ9Y3A4 280 aaKnown RBP14□□□□□ -0.17
USP11-209ENST00000488848 SPATA31A1Q5TZJ5 1347 aa13.99□□□□□ -0.17
USP11-209ENST00000488848 SPATA31A5Q5VU36 1347 aa13.99□□□□□ -0.17
USP11-209ENST00000488848 RNF123Q5XPI4 1314 aa13.99□□□□□ -0.17
USP11-209ENST00000488848 SPATA31A7Q8IWB4 1347 aa13.99□□□□□ -0.17
USP11-209ENST00000488848 GNAT3A8MTJ3 354 aa13.99□□□□□ -0.17
USP11-209ENST00000488848 CSB-PGBD3P0DP91 1061 aa13.99□□□□□ -0.17
USP11-209ENST00000488848 TATP17735 454 aaPredicted RBP13.99□□□□□ -0.17
USP11-209ENST00000488848 TOM1L2Q6ZVM7 507 aa13.99□□□□□ -0.17
USP11-209ENST00000488848 MYH16Q9H6N6 1097 aa13.99□□□□□ -0.17
USP11-209ENST00000488848 SPINK5Q9NQ38 1064 aaPredicted RBP13.99□□□□□ -0.17
USP11-209ENST00000488848 TNS2Q63HR2 1409 aa13.98□□□□□ -0.17
USP11-209ENST00000488848 THSD7AQ9UPZ6 1657 aa13.98□□□□□ -0.17
USP11-209ENST00000488848 IL2RBP14784 551 aa13.98□□□□□ -0.17
USP11-209ENST00000488848 VPS72Q15906 364 aa13.98□□□□□ -0.17
USP11-209ENST00000488848 BARGINQ6ZT62 677 aa13.98□□□□□ -0.17
USP11-209ENST00000488848 UNC5CLQ8IV45 518 aa13.98□□□□□ -0.17
USP11-209ENST00000488848 CDCA7LQ96GN5 454 aa13.98□□□□□ -0.17
USP11-209ENST00000488848 CFAP44Q96MT7 982 aa13.98□□□□□ -0.17
USP11-209ENST00000488848 KDM3BQ7LBC6 1761 aa13.98□□□□□ -0.17
USP11-209ENST00000488848 NKX1-1Q15270 411 aaPredicted RBP13.97□□□□□ -0.17
USP11-209ENST00000488848 SPG7Q9UQ90 795 aa13.97□□□□□ -0.17
USP11-209ENST00000488848 ATRNO75882 1429 aa13.97□□□□□ -0.17
USP11-209ENST00000488848 PCDH11XQ9BZA7 1347 aa13.96□□□□□ -0.17
USP11-209ENST00000488848 PCDH11YQ9BZA8 1340 aa13.96□□□□□ -0.17
USP11-209ENST00000488848 PLEKHG5O94827 1062 aa13.96□□□□□ -0.17
USP11-209ENST00000488848 ADAMTS2O95450 1211 aa13.96□□□□□ -0.17
USP11-209ENST00000488848 EVA1CP58658 441 aa13.96□□□□□ -0.17
USP11-209ENST00000488848 GNAI1P63096 354 aa13.96□□□□□ -0.17
USP11-209ENST00000488848 KDM6AO15550 1401 aaPredicted RBP13.96□□□□□ -0.18
USP11-209ENST00000488848 FANCIQ9NVI1 1328 aa13.95□□□□□ -0.18
USP11-209ENST00000488848 CHL1O00533 1208 aa13.95□□□□□ -0.18
USP11-209ENST00000488848 HSP90AB1P08238 724 aaKnown RBP13.95□□□□□ -0.18
USP11-209ENST00000488848 PHKG2P15735 406 aa13.95□□□□□ -0.18
USP11-209ENST00000488848 NEUROD2Q15784 382 aa13.95□□□□□ -0.18
USP11-209ENST00000488848 ZNF530Q6P9A1 599 aaPredicted RBP13.95□□□□□ -0.18
USP11-209ENST00000488848 ZNF428Q96B54 188 aa13.95□□□□□ -0.18
USP11-209ENST00000488848 SOS1Q07889 1333 aaPredicted RBP13.94□□□□□ -0.18
USP11-209ENST00000488848 GLI3P10071 1580 aa13.94□□□□□ -0.18
USP11-209ENST00000488848 IFNL2Q8IZJ0 200 aa13.94□□□□□ -0.18
USP11-209ENST00000488848 IL17REQ8NFR9 667 aa13.94□□□□□ -0.18
USP11-209ENST00000488848 SALL2Q9Y467 1007 aaPredicted RBP13.94□□□□□ -0.18
USP11-209ENST00000488848 PAPPAQ13219 1627 aa13.93□□□□□ -0.18
USP11-209ENST00000488848 BCL9O00512 1426 aa13.93□□□□□ -0.18
USP11-209ENST00000488848 CYP27B1O15528 508 aa13.93□□□□□ -0.18
USP11-209ENST00000488848 ZCRB1Q8TBF4 217 aaKnown RBP13.93□□□□□ -0.18
USP11-209ENST00000488848 RTF1Q92541 710 aaKnown RBP13.93□□□□□ -0.18
USP11-209ENST00000488848 DCAF5Q96JK2 942 aa13.93□□□□□ -0.18
USP11-209ENST00000488848 STRN4Q9NRL3 753 aa13.93□□□□□ -0.18
USP11-209ENST00000488848 TOGARAM1Q9Y4F4 1720 aa13.93□□□□□ -0.18
USP11-209ENST00000488848 NUTM2BA6NNL0 878 aaPredicted RBP13.92□□□□□ -0.18
USP11-209ENST00000488848 NUTM2EB1AL46 878 aaPredicted RBP13.92□□□□□ -0.18
USP11-209ENST00000488848 C1orf141Q5JVX7 400 aa13.92□□□□□ -0.18
USP11-209ENST00000488848 NUTM2AQ8IVF1 878 aaPredicted RBP13.92□□□□□ -0.18
USP11-209ENST00000488848 RNMTO43148 476 aaKnown RBP13.91□□□□□ -0.18
USP11-209ENST00000488848 ONECUT3O60422 494 aaPredicted RBP13.91□□□□□ -0.18
USP11-209ENST00000488848 MCM10Q7L590 875 aa13.91□□□□□ -0.18
USP11-209ENST00000488848 NGLY1Q96IV0 654 aa13.91□□□□□ -0.18
USP11-209ENST00000488848 HEG1Q9ULI3 1381 aa13.91□□□□□ -0.18
USP11-209ENST00000488848 UBR2Q8IWV8 1755 aa13.91□□□□□ -0.18
USP11-209ENST00000488848 BRPF1P55201 1214 aaPredicted RBP13.9□□□□□ -0.18
USP11-209ENST00000488848 C8orf37Q96NL8 207 aa13.9□□□□□ -0.18
USP11-209ENST00000488848 MBIPQ9NS73 344 aa13.9□□□□□ -0.18
USP11-209ENST00000488848 SENP3-EIF4A1A0A087X0R7 540 aa13.89□□□□□ -0.19
USP11-209ENST00000488848 TAF7Q15545 349 aaPredicted RBP13.89□□□□□ -0.19
USP11-209ENST00000488848 THUMPD2Q9BTF0 503 aaKnown RBP13.89□□□□□ -0.19
USP11-209ENST00000488848 CICQ96RK0 1608 aaPredicted RBP13.89□□□□□ -0.19
USP11-209ENST00000488848 CACNA1FO60840 1977 aa13.89□□□□□ -0.19
USP11-209ENST00000488848 AFF2P51816 1311 aa13.89□□□□□ -0.19
USP11-209ENST00000488848 ERVV-2B6SEH9 535 aa13.88□□□□□ -0.19
USP11-209ENST00000488848 HOXB7P09629 217 aa13.88□□□□□ -0.19
USP11-209ENST00000488848 DCTN1Q14203 1278 aa13.88□□□□□ -0.19
USP11-209ENST00000488848 USP21Q9UK80 565 aa13.88□□□□□ -0.19
USP11-209ENST00000488848 RCAN3Q9UKA8 241 aa13.88□□□□□ -0.19
USP11-209ENST00000488848 SLC52A2Q9HAB3 445 aa13.87□□□□□ -0.19
USP11-209ENST00000488848 TRPC5Q9UL62 973 aaPredicted RBP13.87□□□□□ -0.19
USP11-209ENST00000488848 ALDH1L2Q3SY69 923 aa13.86□□□□□ -0.19
USP11-209ENST00000488848 TSR2Q969E8 191 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms