RNA–Protein interactions for RNA: ENST00000488809.2

PTCH1-211, Transcript of patched 1, humanhuman

TSL 3

Gene PTCH1, Length 301 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-211ENST00000488809 NME9Q86XW9 330 aa9.24□□□□□ -0.93
PTCH1-211ENST00000488809 CD163L1Q9NR16 1453 aa9.23□□□□□ -0.93
PTCH1-211ENST00000488809 IP6K1Q92551 441 aa9.23□□□□□ -0.93
PTCH1-211ENST00000488809 CCNL1Q9UK58 526 aaPredicted RBP9.23□□□□□ -0.93
PTCH1-211ENST00000488809 USP47Q96K76 1375 aa9.23□□□□□ -0.93
PTCH1-211ENST00000488809 CEP350Q5VT06 3117 aa9.22□□□□□ -0.93
PTCH1-211ENST00000488809 NLGN2Q8NFZ4 835 aa9.22□□□□□ -0.93
PTCH1-211ENST00000488809 SMG6Q86US8 1419 aaKnown RBP9.22□□□□□ -0.93
PTCH1-211ENST00000488809 SLC24A1O60721 1099 aa9.21□□□□□ -0.94
PTCH1-211ENST00000488809 AMPHP49418 695 aa9.21□□□□□ -0.94
PTCH1-211ENST00000488809 PRIM1P49642 420 aaKnown RBP9.21□□□□□ -0.94
PTCH1-211ENST00000488809 FLAD1Q8NFF5 587 aa9.21□□□□□ -0.94
PTCH1-211ENST00000488809 ZCRB1Q8TBF4 217 aaKnown RBP9.21□□□□□ -0.94
PTCH1-211ENST00000488809 LTV1Q96GA3 475 aaPredicted RBP9.21□□□□□ -0.94
PTCH1-211ENST00000488809 PUS7Q96PZ0 661 aaKnown RBP9.21□□□□□ -0.94
PTCH1-211ENST00000488809 CARD11Q9BXL7 1154 aa9.21□□□□□ -0.94
PTCH1-211ENST00000488809 GPBP1L1Q9HC44 474 aaPredicted RBP9.21□□□□□ -0.94
PTCH1-211ENST00000488809 CGNL1Q0VF96 1302 aa9.21□□□□□ -0.94
PTCH1-211ENST00000488809 A0A1W2PP64 1363 aa9.21□□□□□ -0.94
PTCH1-211ENST00000488809 ITGB4P16144 1822 aa9.2□□□□□ -0.94
PTCH1-211ENST00000488809 COG3Q96JB2 828 aa9.2□□□□□ -0.94
PTCH1-211ENST00000488809 RTL1A6NKG5 1358 aa9.2□□□□□ -0.94
PTCH1-211ENST00000488809 NSD3Q9BZ95 1437 aa9.2□□□□□ -0.94
PTCH1-211ENST00000488809 ATP10DQ9P241 1426 aa9.2□□□□□ -0.94
PTCH1-211ENST00000488809 YBX3P16989 372 aaKnown RBP eCLIP9.19□□□□□ -0.94
PTCH1-211ENST00000488809 NEUROD1Q13562 356 aa9.19□□□□□ -0.94
PTCH1-211ENST00000488809 RAPGEF4Q8WZA2 1011 aa9.19□□□□□ -0.94
PTCH1-211ENST00000488809 SLC12A5Q9H2X9 1139 aa9.19□□□□□ -0.94
PTCH1-211ENST00000488809 CD2APQ9Y5K6 639 aa9.19□□□□□ -0.94
PTCH1-211ENST00000488809 NSD2O96028 1365 aa9.19□□□□□ -0.94
PTCH1-211ENST00000488809 UBR3Q6ZT12 1888 aa9.19□□□□□ -0.94
PTCH1-211ENST00000488809 MEGF6O75095 1541 aa9.18□□□□□ -0.94
PTCH1-211ENST00000488809 C4BP0C0L5 1744 aa9.18□□□□□ -0.94
PTCH1-211ENST00000488809 HOXC9P31274 260 aa9.18□□□□□ -0.94
PTCH1-211ENST00000488809 KCNQ4P56696 695 aa9.18□□□□□ -0.94
PTCH1-211ENST00000488809 COL23A1Q86Y22 540 aaPredicted RBP9.18□□□□□ -0.94
PTCH1-211ENST00000488809 KIF20BQ96Q89 1820 aa9.18□□□□□ -0.94
PTCH1-211ENST00000488809 MAP3K19Q56UN5 1328 aa9.17□□□□□ -0.94
PTCH1-211ENST00000488809 PCDH11XQ9BZA7 1347 aa9.17□□□□□ -0.94
PTCH1-211ENST00000488809 PCDH11YQ9BZA8 1340 aa9.17□□□□□ -0.94
PTCH1-211ENST00000488809 HSPA6P17066 643 aa9.17□□□□□ -0.94
PTCH1-211ENST00000488809 TATP17735 454 aaPredicted RBP9.17□□□□□ -0.94
PTCH1-211ENST00000488809 MSL1Q68DK7 614 aa9.17□□□□□ -0.94
PTCH1-211ENST00000488809 SIN3AQ96ST3 1273 aa9.17□□□□□ -0.94
PTCH1-211ENST00000488809 ADCY9O60503 1353 aa9.16□□□□□ -0.94
PTCH1-211ENST00000488809 SMARCC1Q92922 1105 aaPredicted RBP9.16□□□□□ -0.94
PTCH1-211ENST00000488809 AK7Q96M32 723 aa9.16□□□□□ -0.94
PTCH1-211ENST00000488809 PKD1L3Q7Z443 1732 aa9.16□□□□□ -0.94
PTCH1-211ENST00000488809 PALLDQ8WX93 1383 aa9.15□□□□□ -0.94
PTCH1-211ENST00000488809 TOGARAM1Q9Y4F4 1720 aa9.14□□□□□ -0.95
PTCH1-211ENST00000488809 TONSLQ96HA7 1378 aa9.14□□□□□ -0.95
PTCH1-211ENST00000488809 ZNF526Q8TF50 670 aaPredicted RBP9.14□□□□□ -0.95
PTCH1-211ENST00000488809 KIF13BQ9NQT8 1826 aa9.14□□□□□ -0.95
PTCH1-211ENST00000488809 KIF24Q5T7B8 1368 aa9.13□□□□□ -0.95
PTCH1-211ENST00000488809 IGSF1Q8N6C5 1336 aa9.13□□□□□ -0.95
PTCH1-211ENST00000488809 NBPF6Q5VWK0 638 aa9.13□□□□□ -0.95
PTCH1-211ENST00000488809 MPRIPQ6WCQ1 1025 aa9.13□□□□□ -0.95
PTCH1-211ENST00000488809 NBPF4Q96M43 638 aa9.13□□□□□ -0.95
PTCH1-211ENST00000488809 CICQ96RK0 1608 aaPredicted RBP9.13□□□□□ -0.95
PTCH1-211ENST00000488809 FLT4P35916 1363 aa9.12□□□□□ -0.95
PTCH1-211ENST00000488809 MAP2P11137 1827 aaKnown RBP9.12□□□□□ -0.95
PTCH1-211ENST00000488809 SSFA2P28290 1259 aa9.12□□□□□ -0.95
PTCH1-211ENST00000488809 INSRP06213 1382 aa9.12□□□□□ -0.95
PTCH1-211ENST00000488809 PHF14O94880 888 aa9.11□□□□□ -0.95
PTCH1-211ENST00000488809 APLP1P51693 650 aa9.11□□□□□ -0.95
PTCH1-211ENST00000488809 RRS1Q15050 365 aaKnown RBP9.11□□□□□ -0.95
PTCH1-211ENST00000488809 USHBP1Q8N6Y0 703 aa9.11□□□□□ -0.95
PTCH1-211ENST00000488809 N4BP2Q86UW6 1770 aaPredicted RBP9.11□□□□□ -0.95
PTCH1-211ENST00000488809 ARFGEF1Q9Y6D6 1849 aa9.1□□□□□ -0.95
PTCH1-211ENST00000488809 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.1□□□□□ -0.95
PTCH1-211ENST00000488809 SPG7Q9UQ90 795 aa9.1□□□□□ -0.95
PTCH1-211ENST00000488809 ANKRD26Q9UPS8 1709 aa9.1□□□□□ -0.95
PTCH1-211ENST00000488809 BRCA1P38398 1863 aaKnown RBP9.1□□□□□ -0.95
PTCH1-211ENST00000488809 WDR90Q96KV7 1748 aa9.09□□□□□ -0.95
PTCH1-211ENST00000488809 ST20-MTHFSA0A0A6YYL1 179 aa9.09□□□□□ -0.95
PTCH1-211ENST00000488809 FBLN1P23142 703 aa9.09□□□□□ -0.95
PTCH1-211ENST00000488809 TMF1P82094 1093 aa9.09□□□□□ -0.95
PTCH1-211ENST00000488809 CDCA8Q53HL2 280 aa9.09□□□□□ -0.95
PTCH1-211ENST00000488809 GGNBP2Q9H3C7 697 aa9.09□□□□□ -0.95
PTCH1-211ENST00000488809 ZNF831Q5JPB2 1677 aa9.09□□□□□ -0.95
PTCH1-211ENST00000488809 LOC102724428A0A0B4J2F2 783 aa9.08□□□□□ -0.96
PTCH1-211ENST00000488809 KIF3CO14782 793 aa9.08□□□□□ -0.96
PTCH1-211ENST00000488809 FYB1O15117 783 aa9.08□□□□□ -0.96
PTCH1-211ENST00000488809 CYP27B1O15528 508 aa9.08□□□□□ -0.96
PTCH1-211ENST00000488809 TOMM70O94826 608 aa9.08□□□□□ -0.96
PTCH1-211ENST00000488809 SIK1P57059 783 aa9.08□□□□□ -0.96
PTCH1-211ENST00000488809 HSP90AB2PQ58FF8 381 aa9.08□□□□□ -0.96
PTCH1-211ENST00000488809 TESK2Q96S53 571 aa9.08□□□□□ -0.96
PTCH1-211ENST00000488809 TMOD3Q9NYL9 352 aa9.08□□□□□ -0.96
PTCH1-211ENST00000488809 WWC3Q9ULE0 1092 aa9.08□□□□□ -0.96
PTCH1-211ENST00000488809 KIAA1551Q9HCM1 1747 aa9.08□□□□□ -0.96
PTCH1-211ENST00000488809 GNPATO15228 680 aa9.07□□□□□ -0.96
PTCH1-211ENST00000488809 TGFB2P61812 414 aa9.07□□□□□ -0.96
PTCH1-211ENST00000488809 NKX1-1Q15270 411 aaPredicted RBP9.07□□□□□ -0.96
PTCH1-211ENST00000488809 C16orf71Q8IYS4 520 aaPredicted RBP9.07□□□□□ -0.96
PTCH1-211ENST00000488809 PIGBQ92521 554 aa9.07□□□□□ -0.96
PTCH1-211ENST00000488809 COL5A3P25940 1745 aaPredicted RBP9.07□□□□□ -0.96
PTCH1-211ENST00000488809 PLEKHG2Q9H7P9 1386 aa9.07□□□□□ -0.96
PTCH1-211ENST00000488809 C4AP0C0L4 1744 aa9.06□□□□□ -0.96
PTCH1-211ENST00000488809 MMP10P09238 476 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms