RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ARHGEF25Q86VW2 580 aa10.9□□□□□ -0.66
USP40-216ENST00000485943 THRAP3Q9Y2W1 955 aaKnown RBP10.9□□□□□ -0.66
USP40-216ENST00000485943 RRS1Q15050 365 aaKnown RBP10.89□□□□□ -0.67
USP40-216ENST00000485943 KRT27Q7Z3Y8 459 aa10.89□□□□□ -0.67
USP40-216ENST00000485943 ANKRD24Q8TF21 1146 aa10.89□□□□□ -0.67
USP40-216ENST00000485943 RGS12O14924 1447 aa10.89□□□□□ -0.67
USP40-216ENST00000485943 CRB1P82279 1406 aa10.89□□□□□ -0.67
USP40-216ENST00000485943 NRAPQ86VF7 1730 aa10.89□□□□□ -0.67
USP40-216ENST00000485943 NSD2O96028 1365 aa10.89□□□□□ -0.67
USP40-216ENST00000485943 SPATA31A1Q5TZJ5 1347 aa10.88□□□□□ -0.67
USP40-216ENST00000485943 SPATA31A5Q5VU36 1347 aa10.88□□□□□ -0.67
USP40-216ENST00000485943 SPATA31A7Q8IWB4 1347 aa10.88□□□□□ -0.67
USP40-216ENST00000485943 WDR17Q8IZU2 1322 aa10.88□□□□□ -0.67
USP40-216ENST00000485943 RGPD5Q99666 1765 aa10.88□□□□□ -0.67
USP40-216ENST00000485943 KAT6BQ8WYB5 2073 aa10.88□□□□□ -0.67
USP40-216ENST00000485943 DDB1Q16531 1140 aa10.88□□□□□ -0.67
USP40-216ENST00000485943 CC2D1BQ5T0F9 858 aaKnown RBP10.88□□□□□ -0.67
USP40-216ENST00000485943 CDCA7Q9BWT1 371 aaPredicted RBP10.88□□□□□ -0.67
USP40-216ENST00000485943 STK24Q9Y6E0 443 aa10.88□□□□□ -0.67
USP40-216ENST00000485943 CCDC7Q96M83 1385 aa10.88□□□□□ -0.67
USP40-216ENST00000485943 COL5A2P05997 1499 aaPredicted RBP10.87□□□□□ -0.67
USP40-216ENST00000485943 OVOS2A0A0J9YW53 1432 aa10.87□□□□□ -0.67
USP40-216ENST00000485943 BLMP54132 1417 aaPredicted RBP10.87□□□□□ -0.67
USP40-216ENST00000485943 OVOS2Q6IE36 1432 aa10.87□□□□□ -0.67
USP40-216ENST00000485943 IP6K1Q92551 441 aa10.87□□□□□ -0.67
USP40-216ENST00000485943 CAMTA1Q9Y6Y1 1673 aa10.86□□□□□ -0.67
USP40-216ENST00000485943 EXOC5O00471 708 aa10.86□□□□□ -0.67
USP40-216ENST00000485943 HOXC9P31274 260 aa10.86□□□□□ -0.67
USP40-216ENST00000485943 PIP4P2Q8N4L2 257 aa10.86□□□□□ -0.67
USP40-216ENST00000485943 RAPGEF4Q8WZA2 1011 aa10.86□□□□□ -0.67
USP40-216ENST00000485943 RTL1A6NKG5 1358 aa10.86□□□□□ -0.67
USP40-216ENST00000485943 FLT4P35916 1363 aa10.86□□□□□ -0.67
USP40-216ENST00000485943 MAP2P11137 1827 aaKnown RBP10.86□□□□□ -0.67
USP40-216ENST00000485943 USP54Q70EL1 1684 aa10.85□□□□□ -0.67
USP40-216ENST00000485943 MAP3K19Q56UN5 1328 aa10.85□□□□□ -0.67
USP40-216ENST00000485943 NFAT5O94916 1531 aa10.85□□□□□ -0.67
USP40-216ENST00000485943 ABCC6O95255 1503 aa10.85□□□□□ -0.67
USP40-216ENST00000485943 C11orf95C9JLR9 678 aaPredicted RBP10.85□□□□□ -0.67
USP40-216ENST00000485943 ZNF467Q7Z7K2 595 aaPredicted RBP10.85□□□□□ -0.67
USP40-216ENST00000485943 CARD10Q9BWT7 1032 aa10.85□□□□□ -0.67
USP40-216ENST00000485943 CARD14Q9BXL6 1004 aa10.85□□□□□ -0.67
USP40-216ENST00000485943 GLI3P10071 1580 aa10.85□□□□□ -0.67
USP40-216ENST00000485943 ERBB3P21860 1342 aa10.84□□□□□ -0.67
USP40-216ENST00000485943 ANKRD26Q9UPS8 1709 aa10.84□□□□□ -0.67
USP40-216ENST00000485943 IL2RBP14784 551 aa10.84□□□□□ -0.67
USP40-216ENST00000485943 BARGINQ6ZT62 677 aa10.84□□□□□ -0.67
USP40-216ENST00000485943 CFAP53Q96M91 514 aa10.84□□□□□ -0.67
USP40-216ENST00000485943 AXIN2Q9Y2T1 843 aa10.84□□□□□ -0.67
USP40-216ENST00000485943 LMO7Q8WWI1 1683 aa10.84□□□□□ -0.67
USP40-216ENST00000485943 FAM208AQ9UK61 1670 aaKnown RBP10.84□□□□□ -0.67
USP40-216ENST00000485943 TATP17735 454 aaPredicted RBP10.83□□□□□ -0.68
USP40-216ENST00000485943 BAG6P46379 1132 aa10.83□□□□□ -0.68
USP40-216ENST00000485943 CCDC125Q86Z20 511 aa10.83□□□□□ -0.68
USP40-216ENST00000485943 WASHC2AQ641Q2 1341 aa10.83□□□□□ -0.68
USP40-216ENST00000485943 BRWD3Q6RI45 1802 aa10.82□□□□□ -0.68
USP40-216ENST00000485943 KIF24Q5T7B8 1368 aa10.82□□□□□ -0.68
USP40-216ENST00000485943 NEFMP07197 916 aa10.82□□□□□ -0.68
USP40-216ENST00000485943 FBLN1P23142 703 aa10.82□□□□□ -0.68
USP40-216ENST00000485943 FAM196AQ6ZSG2 479 aa10.82□□□□□ -0.68
USP40-216ENST00000485943 PCDHB8Q9UN66 801 aa10.82□□□□□ -0.68
USP40-216ENST00000485943 PCDHB13Q9Y5F0 798 aa10.82□□□□□ -0.68
USP40-216ENST00000485943 EMILIN1Q9Y6C2 1016 aa10.82□□□□□ -0.68
USP40-216ENST00000485943 DDX10Q13206 875 aaKnown RBP10.8□□□□□ -0.68
USP40-216ENST00000485943 PDAP1Q13442 181 aaKnown RBP10.8□□□□□ -0.68
USP40-216ENST00000485943 HSP90AB2PQ58FF8 381 aa10.8□□□□□ -0.68
USP40-216ENST00000485943 FAM182BQ5T319 152 aa10.8□□□□□ -0.68
USP40-216ENST00000485943 DDX54Q8TDD1 881 aaKnown RBP10.8□□□□□ -0.68
USP40-216ENST00000485943 UPF1Q92900 1129 aaKnown RBP eCLIP10.8□□□□□ -0.68
USP40-216ENST00000485943 COL18A1P39060 1754 aa10.8□□□□□ -0.68
USP40-216ENST00000485943 INSRP06213 1382 aa10.79□□□□□ -0.68
USP40-216ENST00000485943 ONECUT3O60422 494 aaPredicted RBP10.79□□□□□ -0.68
USP40-216ENST00000485943 USHBP1Q8N6Y0 703 aa10.79□□□□□ -0.68
USP40-216ENST00000485943 SYTL4Q96C24 671 aaPredicted RBP10.79□□□□□ -0.68
USP40-216ENST00000485943 NUDCQ9Y266 331 aa10.79□□□□□ -0.68
USP40-216ENST00000485943 OVOS2A0A0G2JMS6 1433 aa10.78□□□□□ -0.68
USP40-216ENST00000485943 TRIM37O94972 964 aa10.78□□□□□ -0.68
USP40-216ENST00000485943 ZNF579Q8NAF0 562 aaKnown RBP10.78□□□□□ -0.68
USP40-216ENST00000485943 POLKQ9UBT6 870 aa10.78□□□□□ -0.68
USP40-216ENST00000485943 SPG7Q9UQ90 795 aa10.78□□□□□ -0.68
USP40-216ENST00000485943 WNK3Q9BYP7 1800 aa10.77□□□□□ -0.68
USP40-216ENST00000485943 U2SURPO15042 1029 aaKnown RBP10.77□□□□□ -0.69
USP40-216ENST00000485943 APBA3O96018 575 aa10.77□□□□□ -0.69
USP40-216ENST00000485943 ZCRB1Q8TBF4 217 aaKnown RBP10.77□□□□□ -0.69
USP40-216ENST00000485943 PARP4Q9UKK3 1724 aaKnown RBP10.77□□□□□ -0.69
USP40-216ENST00000485943 THSD7AQ9UPZ6 1657 aa10.76□□□□□ -0.69
USP40-216ENST00000485943 DIAPH1O60610 1272 aaKnown RBP10.76□□□□□ -0.69
USP40-216ENST00000485943 MTHFSP49914 203 aa10.76□□□□□ -0.69
USP40-216ENST00000485943 RGPD1P0DJD0 1748 aa10.75□□□□□ -0.69
USP40-216ENST00000485943 RGPD2P0DJD1 1756 aa10.75□□□□□ -0.69
USP40-216ENST00000485943 C1orf141Q5JVX7 400 aa10.75□□□□□ -0.69
USP40-216ENST00000485943 NBPF6Q5VWK0 638 aa10.75□□□□□ -0.69
USP40-216ENST00000485943 NBPF4Q96M43 638 aa10.75□□□□□ -0.69
USP40-216ENST00000485943 RYDENQ9NUL5 291 aaKnown RBP10.75□□□□□ -0.69
USP40-216ENST00000485943 PCDH11XQ9BZA7 1347 aa10.75□□□□□ -0.69
USP40-216ENST00000485943 PCDH11YQ9BZA8 1340 aa10.75□□□□□ -0.69
USP40-216ENST00000485943 TNS2Q63HR2 1409 aa10.75□□□□□ -0.69
USP40-216ENST00000485943 LRRC37A3O60309 1634 aa10.74□□□□□ -0.69
USP40-216ENST00000485943 ZNF316A6NFI3 1004 aaPredicted RBP10.74□□□□□ -0.69
USP40-216ENST00000485943 PSEN1P49768 467 aa10.74□□□□□ -0.69
USP40-216ENST00000485943 EIF4A2Q14240 407 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms