RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 C7P10643 843 aa8.08□□□□□ -1.12
CUX1-208ENST00000485792 METRNQ9UJH8 293 aa8.08□□□□□ -1.12
CUX1-208ENST00000485792 USP21Q9UK80 565 aa8.08□□□□□ -1.12
CUX1-208ENST00000485792 TRIM35Q9UPQ4 493 aa8.08□□□□□ -1.12
CUX1-208ENST00000485792 PKD1L3Q7Z443 1732 aa8.08□□□□□ -1.12
CUX1-208ENST00000485792 TTC21AQ8NDW8 1320 aa8.07□□□□□ -1.12
CUX1-208ENST00000485792 DOT1LQ8TEK3 1739 aa8.07□□□□□ -1.12
CUX1-208ENST00000485792 MEX3CQ5U5Q3 659 aaKnown RBP8.07□□□□□ -1.12
CUX1-208ENST00000485792 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.07□□□□□ -1.12
CUX1-208ENST00000485792 KIF7Q2M1P5 1343 aa8.06□□□□□ -1.12
CUX1-208ENST00000485792 SPATA31A5Q5VU36 1347 aa8.06□□□□□ -1.12
CUX1-208ENST00000485792 SPATA31A7Q8IWB4 1347 aa8.06□□□□□ -1.12
CUX1-208ENST00000485792 NCAPD2Q15021 1401 aa8.06□□□□□ -1.12
CUX1-208ENST00000485792 SMG6Q86US8 1419 aaKnown RBP8.06□□□□□ -1.12
CUX1-208ENST00000485792 ZC3H6P61129 1189 aaKnown RBP8.06□□□□□ -1.12
CUX1-208ENST00000485792 RBM6P78332 1123 aaKnown RBP8.06□□□□□ -1.12
CUX1-208ENST00000485792 PLCB2Q00722 1185 aa8.06□□□□□ -1.12
CUX1-208ENST00000485792 UNC5CLQ8IV45 518 aa8.06□□□□□ -1.12
CUX1-208ENST00000485792 NGLY1Q96IV0 654 aa8.06□□□□□ -1.12
CUX1-208ENST00000485792 QTRT2Q9H974 415 aaKnown RBP8.06□□□□□ -1.12
CUX1-208ENST00000485792 AATKQ6ZMQ8 1374 aa8.06□□□□□ -1.12
CUX1-208ENST00000485792 MEGF6O75095 1541 aa8.05□□□□□ -1.12
CUX1-208ENST00000485792 GCP02774 474 aa8.05□□□□□ -1.12
CUX1-208ENST00000485792 NKX1-1Q15270 411 aaPredicted RBP8.05□□□□□ -1.12
CUX1-208ENST00000485792 VPS72Q15906 364 aa8.05□□□□□ -1.12
CUX1-208ENST00000485792 LHX8Q68G74 356 aa8.05□□□□□ -1.12
CUX1-208ENST00000485792 LMOD2Q6P5Q4 547 aa8.05□□□□□ -1.12
CUX1-208ENST00000485792 ARHGEF25Q86VW2 580 aa8.05□□□□□ -1.12
CUX1-208ENST00000485792 BTG4Q9NY30 223 aa8.05□□□□□ -1.12
CUX1-208ENST00000485792 TRPC5Q9UL62 973 aaPredicted RBP8.05□□□□□ -1.12
CUX1-208ENST00000485792 COL3A1P02461 1466 aaPredicted RBP8.05□□□□□ -1.12
CUX1-208ENST00000485792 NHSQ6T4R5 1651 aa8.05□□□□□ -1.12
CUX1-208ENST00000485792 SPATA31A1Q5TZJ5 1347 aa8.04□□□□□ -1.12
CUX1-208ENST00000485792 WASHC2AQ641Q2 1341 aa8.04□□□□□ -1.12
CUX1-208ENST00000485792 PAPPAQ13219 1627 aa8.04□□□□□ -1.12
CUX1-208ENST00000485792 TUBGCP6Q96RT7 1819 aa8.04□□□□□ -1.12
CUX1-208ENST00000485792 RXRBP28702 533 aa8.04□□□□□ -1.12
CUX1-208ENST00000485792 GOLGA2Q08379 1002 aa8.04□□□□□ -1.12
CUX1-208ENST00000485792 LARP1Q6PKG0 1096 aaKnown RBP8.04□□□□□ -1.12
CUX1-208ENST00000485792 NLRP13Q86W25 1043 aa8.04□□□□□ -1.12
CUX1-208ENST00000485792 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.04□□□□□ -1.12
CUX1-208ENST00000485792 ABTB2Q8N961 1025 aa8.04□□□□□ -1.12
CUX1-208ENST00000485792 GJD4Q96KN9 370 aaPredicted RBP8.04□□□□□ -1.12
CUX1-208ENST00000485792 RGPD3A6NKT7 1758 aaPredicted RBP8.04□□□□□ -1.12
CUX1-208ENST00000485792 RGPD4Q7Z3J3 1758 aa8.04□□□□□ -1.12
CUX1-208ENST00000485792 CRB1P82279 1406 aa8.03□□□□□ -1.12
CUX1-208ENST00000485792 FYB1O15117 783 aa8.03□□□□□ -1.12
CUX1-208ENST00000485792 SEC24BO95487 1268 aa8.03□□□□□ -1.12
CUX1-208ENST00000485792 TMF1P82094 1093 aa8.03□□□□□ -1.12
CUX1-208ENST00000485792 FAM182BQ5T319 152 aa8.03□□□□□ -1.12
CUX1-208ENST00000485792 IER5LQ5T953 404 aa8.03□□□□□ -1.12
CUX1-208ENST00000485792 UPF1Q92900 1129 aaKnown RBP eCLIP8.03□□□□□ -1.12
CUX1-208ENST00000485792 VIRMAQ69YN4 1812 aaKnown RBP8.03□□□□□ -1.12
CUX1-208ENST00000485792 MAP3K19Q56UN5 1328 aa8.03□□□□□ -1.12
CUX1-208ENST00000485792 CCDC7Q96M83 1385 aa8.02□□□□□ -1.13
CUX1-208ENST00000485792 BTAF1O14981 1849 aa8.02□□□□□ -1.13
CUX1-208ENST00000485792 SOX12O15370 315 aa8.02□□□□□ -1.13
CUX1-208ENST00000485792 NLRP6P59044 892 aa8.02□□□□□ -1.13
CUX1-208ENST00000485792 PTF1AQ7RTS3 328 aa8.02□□□□□ -1.13
CUX1-208ENST00000485792 PRDM11Q9NQV5 511 aa8.02□□□□□ -1.13
CUX1-208ENST00000485792 TERF2IPQ9NYB0 399 aa8.02□□□□□ -1.13
CUX1-208ENST00000485792 KAT6BQ8WYB5 2073 aa8.02□□□□□ -1.13
CUX1-208ENST00000485792 ERBB3P21860 1342 aa8.02□□□□□ -1.13
CUX1-208ENST00000485792 EIF4G2P78344 907 aaKnown RBP eCLIP8.01□□□□□ -1.13
CUX1-208ENST00000485792 CDCA8Q53HL2 280 aa8.01□□□□□ -1.13
CUX1-208ENST00000485792 TMC1Q8TDI8 760 aa8.01□□□□□ -1.13
CUX1-208ENST00000485792 GGNBP2Q9H3C7 697 aa8.01□□□□□ -1.13
CUX1-208ENST00000485792 SRCAPQ6ZRS2 3230 aa8.01□□□□□ -1.13
CUX1-208ENST00000485792 TNS2Q63HR2 1409 aa8.01□□□□□ -1.13
CUX1-208ENST00000485792 FAM98CQ17RN3 349 aaKnown RBP8□□□□□ -1.13
CUX1-208ENST00000485792 PAXIP1Q6ZW49 1069 aaPredicted RBP8□□□□□ -1.13
CUX1-208ENST00000485792 KCNH5Q8NCM2 988 aa8□□□□□ -1.13
CUX1-208ENST00000485792 ITGB4P16144 1822 aa8□□□□□ -1.13
CUX1-208ENST00000485792 WDR17Q8IZU2 1322 aa8□□□□□ -1.13
CUX1-208ENST00000485792 CASZ1Q86V15 1759 aa7.99□□□□□ -1.13
CUX1-208ENST00000485792 ADAMTS7Q9UKP4 1686 aa7.99□□□□□ -1.13
CUX1-208ENST00000485792 LY75O60449 1722 aa7.99□□□□□ -1.13
CUX1-208ENST00000485792 BLMP54132 1417 aaPredicted RBP7.99□□□□□ -1.13
CUX1-208ENST00000485792 MKRN3Q13064 507 aaKnown RBP7.99□□□□□ -1.13
CUX1-208ENST00000485792 RRS1Q15050 365 aaKnown RBP7.99□□□□□ -1.13
CUX1-208ENST00000485792 HDGFL2Q7Z4V5 671 aaPredicted RBP7.99□□□□□ -1.13
CUX1-208ENST00000485792 SEPT12Q8IYM1 358 aa7.99□□□□□ -1.13
CUX1-208ENST00000485792 SPRYD3Q8NCJ5 442 aa7.99□□□□□ -1.13
CUX1-208ENST00000485792 NSD2O96028 1365 aa7.98□□□□□ -1.13
CUX1-208ENST00000485792 PER1O15534 1290 aaPredicted RBP7.98□□□□□ -1.13
CUX1-208ENST00000485792 GTPBP6O43824 516 aaPredicted RBP7.98□□□□□ -1.13
CUX1-208ENST00000485792 PLCG2P16885 1265 aa7.98□□□□□ -1.13
CUX1-208ENST00000485792 BARGINQ6ZT62 677 aa7.98□□□□□ -1.13
CUX1-208ENST00000485792 EFCAB3Q8N7B9 438 aa7.98□□□□□ -1.13
CUX1-208ENST00000485792 CFAP44Q96MT7 982 aa7.98□□□□□ -1.13
CUX1-208ENST00000485792 STRN4Q9NRL3 753 aa7.98□□□□□ -1.13
CUX1-208ENST00000485792 EMILIN1Q9Y6C2 1016 aa7.98□□□□□ -1.13
CUX1-208ENST00000485792 RTL1A6NKG5 1358 aa7.97□□□□□ -1.13
CUX1-208ENST00000485792 OVOS2A0A0G2JMS6 1433 aa7.97□□□□□ -1.13
CUX1-208ENST00000485792 HOXC9P31274 260 aa7.97□□□□□ -1.13
CUX1-208ENST00000485792 RYDENQ9NUL5 291 aaKnown RBP7.97□□□□□ -1.13
CUX1-208ENST00000485792 THRAP3Q9Y2W1 955 aaKnown RBP7.97□□□□□ -1.13
CUX1-208ENST00000485792 KIF24Q5T7B8 1368 aa7.97□□□□□ -1.13
CUX1-208ENST00000485792 BCL9O00512 1426 aa7.96□□□□□ -1.13
CUX1-208ENST00000485792 HAP1P54257 671 aaPredicted RBP7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms