RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 PTGIRP43119 386 aa8.24□□□□□ -1.09
VPS13A-211ENST00000484581 SV2AQ7L0J3 742 aa8.24□□□□□ -1.09
VPS13A-211ENST00000484581 SEPT12Q8IYM1 358 aa8.24□□□□□ -1.09
VPS13A-211ENST00000484581 VWA5B2Q8N398 1253 aa8.24□□□□□ -1.09
VPS13A-211ENST00000484581 ESPNB1AK53 854 aa8.23□□□□□ -1.09
VPS13A-211ENST00000484581 LILRA1O75019 489 aa8.23□□□□□ -1.09
VPS13A-211ENST00000484581 ITGA6P23229 1130 aa8.23□□□□□ -1.09
VPS13A-211ENST00000484581 MCM6Q14566 821 aa8.23□□□□□ -1.09
VPS13A-211ENST00000484581 RNF217Q8TC41 542 aa8.23□□□□□ -1.09
VPS13A-211ENST00000484581 TRIM34Q9BYJ4 488 aa8.23□□□□□ -1.09
VPS13A-211ENST00000484581 PCDHB9Q9Y5E1 797 aa8.23□□□□□ -1.09
VPS13A-211ENST00000484581 ZBBXA8MT70 800 aa8.22□□□□□ -1.09
VPS13A-211ENST00000484581 ZNF385CQ66K41 422 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-211ENST00000484581 GPAT2Q6NUI2 795 aa8.22□□□□□ -1.09
VPS13A-211ENST00000484581 CYLDQ9NQC7 956 aa8.22□□□□□ -1.09
VPS13A-211ENST00000484581 TRAK2O60296 914 aa8.21□□□□□ -1.1
VPS13A-211ENST00000484581 DNMT3AQ9Y6K1 912 aaPredicted RBP8.21□□□□□ -1.1
VPS13A-211ENST00000484581 TRIM26Q12899 539 aaPredicted RBP8.2□□□□□ -1.1
VPS13A-211ENST00000484581 LYSMD3Q7Z3D4 306 aa8.2□□□□□ -1.1
VPS13A-211ENST00000484581 CCDC125Q86Z20 511 aa8.2□□□□□ -1.1
VPS13A-211ENST00000484581 SVOPQ8N4V2 548 aa8.2□□□□□ -1.1
VPS13A-211ENST00000484581 CLUAP1Q96AJ1 413 aa8.2□□□□□ -1.1
VPS13A-211ENST00000484581 GIGYF1O75420 1035 aaPredicted RBP8.19□□□□□ -1.1
VPS13A-211ENST00000484581 IGHA1P01876 353 aa8.19□□□□□ -1.1
VPS13A-211ENST00000484581 ATP5J2-PTCD1G3V325 749 aa8.18□□□□□ -1.1
VPS13A-211ENST00000484581 FBXO45P0C2W1 286 aa8.18□□□□□ -1.1
VPS13A-211ENST00000484581 IRS1P35568 1242 aa8.18□□□□□ -1.1
VPS13A-211ENST00000484581 RNFT1Q5M7Z0 435 aa8.18□□□□□ -1.1
VPS13A-211ENST00000484581 RNF20Q5VTR2 975 aa8.18□□□□□ -1.1
VPS13A-211ENST00000484581 FOXD4L5Q5VV16 416 aaPredicted RBP8.18□□□□□ -1.1
VPS13A-211ENST00000484581 PRICKLE2Q7Z3G6 844 aa8.18□□□□□ -1.1
VPS13A-211ENST00000484581 KDF1Q8NAX2 398 aaPredicted RBP8.18□□□□□ -1.1
VPS13A-211ENST00000484581 ESF1Q9H501 851 aaKnown RBP8.18□□□□□ -1.1
VPS13A-211ENST00000484581 MCCD1P59942 119 aaPredicted RBP8.17□□□□□ -1.1
VPS13A-211ENST00000484581 CCDC82Q8N4S0 544 aa8.17□□□□□ -1.1
VPS13A-211ENST00000484581 WHAMMQ8TF30 809 aa8.17□□□□□ -1.1
VPS13A-211ENST00000484581 ZNF592Q92610 1267 aa8.17□□□□□ -1.1
VPS13A-211ENST00000484581 ZNF330Q9Y3S2 320 aaPredicted RBP8.17□□□□□ -1.1
VPS13A-211ENST00000484581 SENP3-EIF4A1A0A087X0R7 540 aa8.16□□□□□ -1.1
VPS13A-211ENST00000484581 MEN1O00255 615 aa8.16□□□□□ -1.1
VPS13A-211ENST00000484581 RNF144AP50876 292 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-211ENST00000484581 GJD4Q96KN9 370 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-211ENST00000484581 ARHGEF15O94989 841 aa8.15□□□□□ -1.1
VPS13A-211ENST00000484581 SLURP2P0DP57 97 aa8.15□□□□□ -1.1
VPS13A-211ENST00000484581 RHOQP17081 205 aa8.15□□□□□ -1.1
VPS13A-211ENST00000484581 PROSER2Q86WR7 435 aaPredicted RBP8.15□□□□□ -1.1
VPS13A-211ENST00000484581 FOXK2Q01167 660 aa8.14□□□□□ -1.11
VPS13A-211ENST00000484581 NR1H3Q13133 447 aa8.14□□□□□ -1.11
VPS13A-211ENST00000484581 CC2D2BQ6DHV5 1058 aa8.14□□□□□ -1.11
VPS13A-211ENST00000484581 KANK3Q6NY19 840 aa8.14□□□□□ -1.11
VPS13A-211ENST00000484581 BANK1Q8NDB2 785 aa8.14□□□□□ -1.11
VPS13A-211ENST00000484581 NLRP3Q96P20 1036 aa8.14□□□□□ -1.11
VPS13A-211ENST00000484581 A0A1W2PRU2 124 aa8.13□□□□□ -1.11
VPS13A-211ENST00000484581 GPC1P35052 558 aa8.13□□□□□ -1.11
VPS13A-211ENST00000484581 XP32Q5T750 250 aa8.13□□□□□ -1.11
VPS13A-211ENST00000484581 FOXR1Q6PIV2 292 aa8.13□□□□□ -1.11
VPS13A-211ENST00000484581 RAD21O60216 631 aa8.12□□□□□ -1.11
VPS13A-211ENST00000484581 MARSP56192 900 aaKnown RBP8.12□□□□□ -1.11
VPS13A-211ENST00000484581 SLC27A3Q5K4L6 730 aa8.12□□□□□ -1.11
VPS13A-211ENST00000484581 RIPOR1Q6ZS17 1223 aa8.12□□□□□ -1.11
VPS13A-211ENST00000484581 ADAMTS2O95450 1211 aa8.11□□□□□ -1.11
VPS13A-211ENST00000484581 PDIA4P13667 645 aaKnown RBP8.11□□□□□ -1.11
VPS13A-211ENST00000484581 ERVK-9P63128 1117 aa8.11□□□□□ -1.11
VPS13A-211ENST00000484581 CYP2U1Q7Z449 544 aa8.11□□□□□ -1.11
VPS13A-211ENST00000484581 FNBP4Q8N3X1 1017 aaPredicted RBP8.11□□□□□ -1.11
VPS13A-211ENST00000484581 GMCL1Q96IK5 515 aa8.11□□□□□ -1.11
VPS13A-211ENST00000484581 CUEDC1Q9NWM3 386 aaPredicted RBP8.11□□□□□ -1.11
VPS13A-211ENST00000484581 PCDHB11Q9Y5F2 797 aa8.11□□□□□ -1.11
VPS13A-211ENST00000484581 NDUFB9Q9Y6M9 179 aa8.11□□□□□ -1.11
VPS13A-211ENST00000484581 MAP3K10Q02779 954 aa8.1□□□□□ -1.11
VPS13A-211ENST00000484581 SRSF11Q05519 484 aaKnown RBP8.1□□□□□ -1.11
VPS13A-211ENST00000484581 POU4F2Q12837 409 aa8.1□□□□□ -1.11
VPS13A-211ENST00000484581 TRIM22Q8IYM9 498 aa8.1□□□□□ -1.11
VPS13A-211ENST00000484581 H7C1W4 665 aa8.09□□□□□ -1.11
VPS13A-211ENST00000484581 RANGAP1P46060 587 aaPredicted RBP8.09□□□□□ -1.11
VPS13A-211ENST00000484581 SCARF2Q96GP6 870 aaPredicted RBP8.09□□□□□ -1.11
VPS13A-211ENST00000484581 CLN3Q13286 438 aa8.08□□□□□ -1.12
VPS13A-211ENST00000484581 POM121Q96HA1 1249 aa8.08□□□□□ -1.12
VPS13A-211ENST00000484581 GAS2L1Q99501 681 aaPredicted RBP8.08□□□□□ -1.12
VPS13A-211ENST00000484581 ENAMQ9NRM1 1142 aa8.08□□□□□ -1.12
VPS13A-211ENST00000484581 DYRK1BQ9Y463 629 aa8.08□□□□□ -1.12
VPS13A-211ENST00000484581 ZBTB7CA1YPR0 619 aa8.07□□□□□ -1.12
VPS13A-211ENST00000484581 SOCS7O14512 581 aa8.07□□□□□ -1.12
VPS13A-211ENST00000484581 SCTRP47872 440 aa8.07□□□□□ -1.12
VPS13A-211ENST00000484581 LYPD4Q6UWN0 246 aa8.07□□□□□ -1.12
VPS13A-211ENST00000484581 MTMR14Q8NCE2 650 aa8.07□□□□□ -1.12
VPS13A-211ENST00000484581 CCDC97Q96F63 343 aaPredicted RBP8.07□□□□□ -1.12
VPS13A-211ENST00000484581 TRERF1Q96PN7 1200 aa8.07□□□□□ -1.12
VPS13A-211ENST00000484581 SERPINA10Q9UK55 444 aa8.07□□□□□ -1.12
VPS13A-211ENST00000484581 GAS6Q14393 721 aa8.06□□□□□ -1.12
VPS13A-211ENST00000484581 DBN1Q16643 649 aa8.06□□□□□ -1.12
VPS13A-211ENST00000484581 ZNF837Q96EG3 531 aaPredicted RBP8.06□□□□□ -1.12
VPS13A-211ENST00000484581 GRIP2Q9C0E4 1043 aa8.06□□□□□ -1.12
VPS13A-211ENST00000484581 SNRKQ9NRH2 765 aa8.06□□□□□ -1.12
VPS13A-211ENST00000484581 ZNF777Q9ULD5 760 aaPredicted RBP8.06□□□□□ -1.12
VPS13A-211ENST00000484581 COG6Q9Y2V7 657 aa8.06□□□□□ -1.12
VPS13A-211ENST00000484581 GPR25O00155 361 aa8.05□□□□□ -1.12
VPS13A-211ENST00000484581 ADAM23O75077 832 aa8.05□□□□□ -1.12
VPS13A-211ENST00000484581 MYCP01106 439 aaPredicted RBP8.05□□□□□ -1.12
VPS13A-211ENST00000484581 NBPF10Q6P3W6 841 aaKnown RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms