RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 MAPK8IP3Q9UPT6 1336 aa16.2■□□□□ 0.18
SDC1-206ENST00000482879 MEGF6O75095 1541 aa16.2■□□□□ 0.18
SDC1-206ENST00000482879 PLEKHO1Q53GL0 409 aaPredicted RBP16.2■□□□□ 0.18
SDC1-206ENST00000482879 CDCA7Q9BWT1 371 aaPredicted RBP16.2■□□□□ 0.18
SDC1-206ENST00000482879 RBM6P78332 1123 aaKnown RBP16.19■□□□□ 0.18
SDC1-206ENST00000482879 DISP2A7MBM2 1401 aa16.19■□□□□ 0.18
SDC1-206ENST00000482879 A0A0G2JS52 829 aa16.18■□□□□ 0.18
SDC1-206ENST00000482879 MYT1Q01538 1121 aa16.18■□□□□ 0.18
SDC1-206ENST00000482879 AMOTQ4VCS5 1084 aa16.18■□□□□ 0.18
SDC1-206ENST00000482879 POTEAQ6S8J7 498 aa16.18■□□□□ 0.18
SDC1-206ENST00000482879 ZCRB1Q8TBF4 217 aaKnown RBP16.18■□□□□ 0.18
SDC1-206ENST00000482879 SPG7Q9UQ90 795 aa16.18■□□□□ 0.18
SDC1-206ENST00000482879 OVOS2A0A0G2JMS6 1433 aa16.18■□□□□ 0.18
SDC1-206ENST00000482879 EXOC5O00471 708 aa16.17■□□□□ 0.18
SDC1-206ENST00000482879 APAF1O14727 1248 aa16.17■□□□□ 0.18
SDC1-206ENST00000482879 RXRBP28702 533 aa16.17■□□□□ 0.18
SDC1-206ENST00000482879 MTHFSDQ2M296 383 aaKnown RBP16.17■□□□□ 0.18
SDC1-206ENST00000482879 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.17■□□□□ 0.18
SDC1-206ENST00000482879 KAT6BQ8WYB5 2073 aa16.17■□□□□ 0.18
SDC1-206ENST00000482879 DLG5Q8TDM6 1919 aa16.16■□□□□ 0.18
SDC1-206ENST00000482879 SENP3-EIF4A1A0A087X0R7 540 aa16.16■□□□□ 0.18
SDC1-206ENST00000482879 ONECUT3O60422 494 aaPredicted RBP16.16■□□□□ 0.18
SDC1-206ENST00000482879 GAS2L2Q8NHY3 880 aa16.16■□□□□ 0.18
SDC1-206ENST00000482879 PKD1L3Q7Z443 1732 aa16.16■□□□□ 0.18
SDC1-206ENST00000482879 PLEKHG2Q9H7P9 1386 aa16.15■□□□□ 0.18
SDC1-206ENST00000482879 NFE2L2Q16236 605 aa16.15■□□□□ 0.18
SDC1-206ENST00000482879 DDB1Q16531 1140 aa16.15■□□□□ 0.18
SDC1-206ENST00000482879 ZNF530Q6P9A1 599 aaPredicted RBP16.15■□□□□ 0.18
SDC1-206ENST00000482879 RRP7AQ9Y3A4 280 aaKnown RBP16.15■□□□□ 0.18
SDC1-206ENST00000482879 TMPOP42166 694 aaKnown RBP16.14■□□□□ 0.17
SDC1-206ENST00000482879 NEUROD2Q15784 382 aa16.14■□□□□ 0.17
SDC1-206ENST00000482879 SEPT12Q8IYM1 358 aa16.14■□□□□ 0.17
SDC1-206ENST00000482879 DDX54Q8TDD1 881 aaKnown RBP16.14■□□□□ 0.17
SDC1-206ENST00000482879 THSD7AQ9UPZ6 1657 aa16.14■□□□□ 0.17
SDC1-206ENST00000482879 RIPK4P57078 832 aa16.13■□□□□ 0.17
SDC1-206ENST00000482879 C1orf141Q5JVX7 400 aa16.13■□□□□ 0.17
SDC1-206ENST00000482879 SHANK3Q9BYB0 1731 aa16.13■□□□□ 0.17
SDC1-206ENST00000482879 LRRC37A3O60309 1634 aa16.12■□□□□ 0.17
SDC1-206ENST00000482879 IFNL2Q8IZJ0 200 aa16.12■□□□□ 0.17
SDC1-206ENST00000482879 SALL2Q9Y467 1007 aaPredicted RBP16.12■□□□□ 0.17
SDC1-206ENST00000482879 PCDH11XQ9BZA7 1347 aa16.12■□□□□ 0.17
SDC1-206ENST00000482879 PCDH11YQ9BZA8 1340 aa16.12■□□□□ 0.17
SDC1-206ENST00000482879 TNS2Q63HR2 1409 aa16.11■□□□□ 0.17
SDC1-206ENST00000482879 VIRMAQ69YN4 1812 aaKnown RBP16.11■□□□□ 0.17
SDC1-206ENST00000482879 BRWD3Q6RI45 1802 aa16.11■□□□□ 0.17
SDC1-206ENST00000482879 CYP27B1O15528 508 aa16.11■□□□□ 0.17
SDC1-206ENST00000482879 PHKG2P15735 406 aa16.11■□□□□ 0.17
SDC1-206ENST00000482879 PDE3BQ13370 1112 aa16.11■□□□□ 0.17
SDC1-206ENST00000482879 AKAP4Q5JQC9 854 aa16.11■□□□□ 0.17
SDC1-206ENST00000482879 GNAT3A8MTJ3 354 aa16.1■□□□□ 0.17
SDC1-206ENST00000482879 HNRNPUQ00839 825 aaKnown RBP eCLIP16.1■□□□□ 0.17
SDC1-206ENST00000482879 MAP3K5Q99683 1374 aa16.1■□□□□ 0.17
SDC1-206ENST00000482879 RTF1Q92541 710 aaKnown RBP16.09■□□□□ 0.17
SDC1-206ENST00000482879 HTATSF1O43719 755 aaKnown RBP16.08■□□□□ 0.16
SDC1-206ENST00000482879 HSP90AB1P08238 724 aaKnown RBP16.08■□□□□ 0.16
SDC1-206ENST00000482879 LMOD3Q0VAK6 560 aa16.08■□□□□ 0.16
SDC1-206ENST00000482879 MPRIPQ6WCQ1 1025 aa16.08■□□□□ 0.16
SDC1-206ENST00000482879 NGEFQ8N5V2 710 aa16.08■□□□□ 0.16
SDC1-206ENST00000482879 MARCH10Q8NA82 808 aaPredicted RBP16.08■□□□□ 0.16
SDC1-206ENST00000482879 NCBP3Q53F19 620 aaKnown RBP16.07■□□□□ 0.16
SDC1-206ENST00000482879 YTHDC1Q96MU7 727 aaKnown RBP16.07■□□□□ 0.16
SDC1-206ENST00000482879 TRIM35Q9UPQ4 493 aa16.07■□□□□ 0.16
SDC1-206ENST00000482879 SCN11AQ9UI33 1791 aa16.06■□□□□ 0.16
SDC1-206ENST00000482879 RNMTO43148 476 aaKnown RBP16.06■□□□□ 0.16
SDC1-206ENST00000482879 DCTN1Q14203 1278 aa16.06■□□□□ 0.16
SDC1-206ENST00000482879 NKX1-1Q15270 411 aaPredicted RBP16.06■□□□□ 0.16
SDC1-206ENST00000482879 CCDC27Q2M243 656 aa16.06■□□□□ 0.16
SDC1-206ENST00000482879 MCM10Q7L590 875 aa16.06■□□□□ 0.16
SDC1-206ENST00000482879 KRT27Q7Z3Y8 459 aa16.06■□□□□ 0.16
SDC1-206ENST00000482879 DCAF5Q96JK2 942 aa16.06■□□□□ 0.16
SDC1-206ENST00000482879 LGR6Q9HBX8 967 aa16.06■□□□□ 0.16
SDC1-206ENST00000482879 RGS12O14924 1447 aa16.05■□□□□ 0.16
SDC1-206ENST00000482879 IL17REQ8NFR9 667 aa16.05■□□□□ 0.16
SDC1-206ENST00000482879 WWC1Q8IX03 1113 aa16.04■□□□□ 0.16
SDC1-206ENST00000482879 THUMPD2Q9BTF0 503 aaKnown RBP16.04■□□□□ 0.16
SDC1-206ENST00000482879 FAM182BQ5T319 152 aa16.03■□□□□ 0.16
SDC1-206ENST00000482879 KDM6AO15550 1401 aaPredicted RBP16.02■□□□□ 0.16
SDC1-206ENST00000482879 ITGB4P16144 1822 aa16.02■□□□□ 0.16
SDC1-206ENST00000482879 ADAMTS7Q9UKP4 1686 aa16.02■□□□□ 0.15
SDC1-206ENST00000482879 ERVV-2B6SEH9 535 aa16.01■□□□□ 0.15
SDC1-206ENST00000482879 TEFQ10587 303 aa16.01■□□□□ 0.15
SDC1-206ENST00000482879 CEMIPQ8WUJ3 1361 aa16■□□□□ 0.15
SDC1-206ENST00000482879 TOGARAM1Q9Y4F4 1720 aa16■□□□□ 0.15
SDC1-206ENST00000482879 CABP4P57796 275 aa16■□□□□ 0.15
SDC1-206ENST00000482879 CALD1Q05682 793 aaKnown RBP16■□□□□ 0.15
SDC1-206ENST00000482879 WDR63Q8IWG1 891 aa16■□□□□ 0.15
SDC1-206ENST00000482879 ACSBG1Q96GR2 724 aa16■□□□□ 0.15
SDC1-206ENST00000482879 SBF2Q86WG5 1849 aa16■□□□□ 0.15
SDC1-206ENST00000482879 DOT1LQ8TEK3 1739 aa15.99■□□□□ 0.15
SDC1-206ENST00000482879 ZBED9Q6R2W3 1325 aa15.99■□□□□ 0.15
SDC1-206ENST00000482879 ZNF521Q96K83 1311 aa15.99■□□□□ 0.15
SDC1-206ENST00000482879 PRIM1P49642 420 aaKnown RBP15.99■□□□□ 0.15
SDC1-206ENST00000482879 FAM196AQ6ZSG2 479 aa15.99■□□□□ 0.15
SDC1-206ENST00000482879 SLC52A2Q9HAB3 445 aa15.99■□□□□ 0.15
SDC1-206ENST00000482879 TAF7Q15545 349 aaPredicted RBP15.98■□□□□ 0.15
SDC1-206ENST00000482879 NFATC2IPQ8NCF5 419 aa15.98■□□□□ 0.15
SDC1-206ENST00000482879 SYTL4Q96C24 671 aaPredicted RBP15.98■□□□□ 0.15
SDC1-206ENST00000482879 LAS1LQ9Y4W2 734 aaKnown RBP15.98■□□□□ 0.15
SDC1-206ENST00000482879 SIPA1L3O60292 1781 aaPredicted RBP15.98■□□□□ 0.15
SDC1-206ENST00000482879 BCL9O00512 1426 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms