RNA–Protein interactions for RNA: ENST00000481910.1

HPS4-212, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 1,914 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-212ENST00000481910 RAPGEF4Q8WZA2 1011 aa15.36■□□□□ 0.05
HPS4-212ENST00000481910 GJD4Q96KN9 370 aaPredicted RBP15.36■□□□□ 0.05
HPS4-212ENST00000481910 PNNQ9H307 717 aaKnown RBP15.36■□□□□ 0.05
HPS4-212ENST00000481910 KDRP35968 1356 aa15.35■□□□□ 0.05
HPS4-212ENST00000481910 PRKAR2BP31323 418 aa15.35■□□□□ 0.05
HPS4-212ENST00000481910 RSPH6AQ9H0K4 717 aa15.35■□□□□ 0.05
HPS4-212ENST00000481910 THRAP3Q9Y2W1 955 aaKnown RBP15.35■□□□□ 0.05
HPS4-212ENST00000481910 NCAPD2Q15021 1401 aa15.35■□□□□ 0.05
HPS4-212ENST00000481910 FKBP8Q14318 412 aa15.35■□□□□ 0.05
HPS4-212ENST00000481910 ATRNO75882 1429 aa15.34■□□□□ 0.05
HPS4-212ENST00000481910 NEFMP07197 916 aa15.34■□□□□ 0.05
HPS4-212ENST00000481910 IL2RBP14784 551 aa15.34■□□□□ 0.05
HPS4-212ENST00000481910 RGS17Q9UGC6 210 aaPredicted RBP15.34■□□□□ 0.05
HPS4-212ENST00000481910 MSH5O43196 834 aa15.33■□□□□ 0.05
HPS4-212ENST00000481910 TATP17735 454 aaPredicted RBP15.33■□□□□ 0.05
HPS4-212ENST00000481910 CCDC146Q8IYE0 955 aa15.33■□□□□ 0.05
HPS4-212ENST00000481910 BARGINQ6ZT62 677 aa15.33■□□□□ 0.04
HPS4-212ENST00000481910 FAM98CQ17RN3 349 aaKnown RBP15.32■□□□□ 0.04
HPS4-212ENST00000481910 HOMEZQ8IX15 550 aa15.32■□□□□ 0.04
HPS4-212ENST00000481910 PKNOX2Q96KN3 472 aa15.32■□□□□ 0.04
HPS4-212ENST00000481910 PLEKHF1Q96S99 279 aa15.32■□□□□ 0.04
HPS4-212ENST00000481910 RUNDC1Q96C34 613 aa15.31■□□□□ 0.04
HPS4-212ENST00000481910 PHACTR3Q96KR7 559 aa15.31■□□□□ 0.04
HPS4-212ENST00000481910 CDCA7Q9BWT1 371 aaPredicted RBP15.31■□□□□ 0.04
HPS4-212ENST00000481910 MAPK8IP3Q9UPT6 1336 aa15.31■□□□□ 0.04
HPS4-212ENST00000481910 MEGF6O75095 1541 aa15.3■□□□□ 0.04
HPS4-212ENST00000481910 A0A0G2JS52 829 aa15.3■□□□□ 0.04
HPS4-212ENST00000481910 RBM6P78332 1123 aaKnown RBP15.3■□□□□ 0.04
HPS4-212ENST00000481910 GLI3P10071 1580 aa15.3■□□□□ 0.04
HPS4-212ENST00000481910 RXRBP28702 533 aa15.29■□□□□ 0.04
HPS4-212ENST00000481910 PLEKHO1Q53GL0 409 aaPredicted RBP15.29■□□□□ 0.04
HPS4-212ENST00000481910 NEFLP07196 543 aa15.29■□□□□ 0.04
HPS4-212ENST00000481910 AMOTQ4VCS5 1084 aa15.29■□□□□ 0.04
HPS4-212ENST00000481910 POTEAQ6S8J7 498 aa15.29■□□□□ 0.04
HPS4-212ENST00000481910 KLHL34Q8N239 644 aa15.29■□□□□ 0.04
HPS4-212ENST00000481910 EXOC5O00471 708 aa15.28■□□□□ 0.04
HPS4-212ENST00000481910 ZCRB1Q8TBF4 217 aaKnown RBP15.28■□□□□ 0.04
HPS4-212ENST00000481910 SPG7Q9UQ90 795 aa15.28■□□□□ 0.04
HPS4-212ENST00000481910 PARP4Q9UKK3 1724 aaKnown RBP15.28■□□□□ 0.04
HPS4-212ENST00000481910 OVOS2A0A0G2JMS6 1433 aa15.28■□□□□ 0.04
HPS4-212ENST00000481910 DISP2A7MBM2 1401 aa15.28■□□□□ 0.04
HPS4-212ENST00000481910 APAF1O14727 1248 aa15.27■□□□□ 0.04
HPS4-212ENST00000481910 ONECUT3O60422 494 aaPredicted RBP15.27■□□□□ 0.04
HPS4-212ENST00000481910 MTHFSDQ2M296 383 aaKnown RBP15.27■□□□□ 0.04
HPS4-212ENST00000481910 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.27■□□□□ 0.045e-7■□□□□ 11.2
HPS4-212ENST00000481910 WNK3Q9BYP7 1800 aa15.27■□□□□ 0.04
HPS4-212ENST00000481910 SENP3-EIF4A1A0A087X0R7 540 aa15.27■□□□□ 0.03
HPS4-212ENST00000481910 DDB1Q16531 1140 aa15.27■□□□□ 0.03
HPS4-212ENST00000481910 TPRNQ4KMQ1 711 aa15.27■□□□□ 0.03
HPS4-212ENST00000481910 PLEKHG2Q9H7P9 1386 aa15.26■□□□□ 0.03
HPS4-212ENST00000481910 NEUROD2Q15784 382 aa15.25■□□□□ 0.03
HPS4-212ENST00000481910 SEPT12Q8IYM1 358 aa15.25■□□□□ 0.03
HPS4-212ENST00000481910 GAS2L2Q8NHY3 880 aa15.25■□□□□ 0.03
HPS4-212ENST00000481910 DDX54Q8TDD1 881 aaKnown RBP15.25■□□□□ 0.03
HPS4-212ENST00000481910 ZNF530Q6P9A1 599 aaPredicted RBP15.25■□□□□ 0.03
HPS4-212ENST00000481910 RRP7AQ9Y3A4 280 aaKnown RBP15.25■□□□□ 0.03
HPS4-212ENST00000481910 TMPOP42166 694 aaKnown RBP15.24■□□□□ 0.03
HPS4-212ENST00000481910 NFE2L2Q16236 605 aa15.24■□□□□ 0.03
HPS4-212ENST00000481910 ERICH6BQ5W0A0 696 aa15.24■□□□□ 0.03
HPS4-212ENST00000481910 FOXD4L1Q9NU39 408 aa15.24■□□□□ 0.03
HPS4-212ENST00000481910 PCDH11XQ9BZA7 1347 aa15.24■□□□□ 0.03
HPS4-212ENST00000481910 PCDH11YQ9BZA8 1340 aa15.24■□□□□ 0.03
HPS4-212ENST00000481910 RIPK4P57078 832 aa15.23■□□□□ 0.03
HPS4-212ENST00000481910 C1orf141Q5JVX7 400 aa15.23■□□□□ 0.03
HPS4-212ENST00000481910 GTF3C3Q9Y5Q9 886 aa15.23■□□□□ 0.03
HPS4-212ENST00000481910 PKD1L3Q7Z443 1732 aa15.23■□□□□ 0.03
HPS4-212ENST00000481910 CYP27B1O15528 508 aa15.23■□□□□ 0.03
HPS4-212ENST00000481910 PDE3BQ13370 1112 aa15.23■□□□□ 0.03
HPS4-212ENST00000481910 IFNL2Q8IZJ0 200 aa15.23■□□□□ 0.03
HPS4-212ENST00000481910 SALL2Q9Y467 1007 aaPredicted RBP15.23■□□□□ 0.03
HPS4-212ENST00000481910 THSD7AQ9UPZ6 1657 aa15.23■□□□□ 0.03
HPS4-212ENST00000481910 AKAP4Q5JQC9 854 aa15.22■□□□□ 0.03
HPS4-212ENST00000481910 LRRC37A3O60309 1634 aa15.22■□□□□ 0.03
HPS4-212ENST00000481910 GNAT3A8MTJ3 354 aa15.21■□□□□ 0.03
HPS4-212ENST00000481910 PHKG2P15735 406 aa15.21■□□□□ 0.03
HPS4-212ENST00000481910 TNS2Q63HR2 1409 aa15.21■□□□□ 0.03
HPS4-212ENST00000481910 ANO8Q9HCE9 1232 aaPredicted RBP15.21■□□□□ 0.02
HPS4-212ENST00000481910 DLG5Q8TDM6 1919 aa15.21■□□□□ 0.02
HPS4-212ENST00000481910 HNRNPUQ00839 825 aaKnown RBP eCLIP15.2■□□□□ 0.02
HPS4-212ENST00000481910 RTF1Q92541 710 aaKnown RBP15.2■□□□□ 0.02
HPS4-212ENST00000481910 SHANK3Q9BYB0 1731 aa15.2■□□□□ 0.02
HPS4-212ENST00000481910 MAP3K5Q99683 1374 aa15.19■□□□□ 0.02
HPS4-212ENST00000481910 MARCH10Q8NA82 808 aaPredicted RBP15.19■□□□□ 0.02
HPS4-212ENST00000481910 HSP90AB1P08238 724 aaKnown RBP15.19■□□□□ 0.02
HPS4-212ENST00000481910 MPRIPQ6WCQ1 1025 aa15.19■□□□□ 0.02
HPS4-212ENST00000481910 LMOD3Q0VAK6 560 aa15.18■□□□□ 0.02
HPS4-212ENST00000481910 NGEFQ8N5V2 710 aa15.18■□□□□ 0.02
HPS4-212ENST00000481910 YTHDC1Q96MU7 727 aaKnown RBP15.18■□□□□ 0.02
HPS4-212ENST00000481910 HTATSF1O43719 755 aaKnown RBP15.17■□□□□ 0.02
HPS4-212ENST00000481910 MCM10Q7L590 875 aa15.17■□□□□ 0.02
HPS4-212ENST00000481910 KRT27Q7Z3Y8 459 aa15.17■□□□□ 0.02
HPS4-212ENST00000481910 DCAF5Q96JK2 942 aa15.17■□□□□ 0.02
HPS4-212ENST00000481910 TRIM35Q9UPQ4 493 aa15.17■□□□□ 0.02
HPS4-212ENST00000481910 BRWD3Q6RI45 1802 aa15.17■□□□□ 0.02
HPS4-212ENST00000481910 KAT6BQ8WYB5 2073 aa15.17■□□□□ 0.02
HPS4-212ENST00000481910 RGS12O14924 1447 aa15.17■□□□□ 0.02
HPS4-212ENST00000481910 PDIA4P13667 645 aaKnown RBP15.17■□□□□ 0.02
HPS4-212ENST00000481910 DCTN1Q14203 1278 aa15.17■□□□□ 0.02
HPS4-212ENST00000481910 NKX1-1Q15270 411 aaPredicted RBP15.17■□□□□ 0.02
HPS4-212ENST00000481910 FAM182BQ5T319 152 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms