RNA–Protein interactions for RNA: ENST00000478913.1

CCDC171-207, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-207ENST00000478913 ERVH48-1M5A8F1 160 aa9.58□□□□□ -0.88
CCDC171-207ENST00000478913 NR3C2P08235 984 aa9.58□□□□□ -0.88
CCDC171-207ENST00000478913 LMOD1P29536 600 aaPredicted RBP9.58□□□□□ -0.88
CCDC171-207ENST00000478913 CFAP70Q5T0N1 1121 aa9.58□□□□□ -0.88
CCDC171-207ENST00000478913 MAFBQ9Y5Q3 323 aaPredicted RBP9.58□□□□□ -0.88
CCDC171-207ENST00000478913 SMARCA2P51531 1590 aa9.58□□□□□ -0.88
CCDC171-207ENST00000478913 USP17L3A6NCW0 530 aa9.57□□□□□ -0.88
CCDC171-207ENST00000478913 USP17L4A6NCW7 530 aa9.57□□□□□ -0.88
CCDC171-207ENST00000478913 RFX1P22670 979 aa9.57□□□□□ -0.88
CCDC171-207ENST00000478913 OXLD1Q5BKU9 147 aa9.57□□□□□ -0.88
CCDC171-207ENST00000478913 PPP1R26Q5T8A7 1209 aaPredicted RBP9.57□□□□□ -0.88
CCDC171-207ENST00000478913 USP17L2Q6R6M4 530 aa9.57□□□□□ -0.88
CCDC171-207ENST00000478913 USP17L1Q7RTZ2 530 aa9.57□□□□□ -0.88
CCDC171-207ENST00000478913 TRIM52Q96A61 297 aa9.57□□□□□ -0.88
CCDC171-207ENST00000478913 CHIC2Q9UKJ5 165 aa9.57□□□□□ -0.88
CCDC171-207ENST00000478913 HECW2Q9P2P5 1572 aa9.57□□□□□ -0.88
CCDC171-207ENST00000478913 SMPD1P17405 629 aa9.56□□□□□ -0.88
CCDC171-207ENST00000478913 NCOA4Q13772 614 aa9.56□□□□□ -0.88
CCDC171-207ENST00000478913 EML3Q32P44 896 aa9.56□□□□□ -0.88
CCDC171-207ENST00000478913 TSGA10IPQ3SY00 556 aa9.56□□□□□ -0.88
CCDC171-207ENST00000478913 DEPDC4Q8N2C3 294 aa9.56□□□□□ -0.88
CCDC171-207ENST00000478913 SYNJ2O15056 1496 aa9.55□□□□□ -0.88
CCDC171-207ENST00000478913 LZTS3O60299 673 aaPredicted RBP9.55□□□□□ -0.88
CCDC171-207ENST00000478913 PLEKHM2Q8IWE5 1019 aa9.55□□□□□ -0.88
CCDC171-207ENST00000478913 CRIPAKQ8N1N5 446 aa9.55□□□□□ -0.88
CCDC171-207ENST00000478913 TMPRSS4Q9NRS4 437 aa9.55□□□□□ -0.88
CCDC171-207ENST00000478913 PGPEP1Q9NXJ5 209 aa9.55□□□□□ -0.88
CCDC171-207ENST00000478913 EMILIN1Q9Y6C2 1016 aa9.55□□□□□ -0.88
CCDC171-207ENST00000478913 CDCA7Q9BWT1 371 aaPredicted RBP9.54□□□□□ -0.88
CCDC171-207ENST00000478913 MYCP01106 439 aaPredicted RBP9.53□□□□□ -0.88
CCDC171-207ENST00000478913 ZNF784Q8NCA9 323 aaPredicted RBP9.53□□□□□ -0.88
CCDC171-207ENST00000478913 SIRT1Q96EB6 747 aa9.53□□□□□ -0.88
CCDC171-207ENST00000478913 ESF1Q9H501 851 aaKnown RBP9.53□□□□□ -0.88
CCDC171-207ENST00000478913 WDR4P57081 412 aaKnown RBP9.52□□□□□ -0.89
CCDC171-207ENST00000478913 INSM1Q01101 510 aaPredicted RBP9.52□□□□□ -0.89
CCDC171-207ENST00000478913 USP4Q13107 963 aa9.52□□□□□ -0.89
CCDC171-207ENST00000478913 HPS1Q92902 700 aa9.52□□□□□ -0.89
CCDC171-207ENST00000478913 CYLDQ9NQC7 956 aa9.52□□□□□ -0.89
CCDC171-207ENST00000478913 NOD1Q9Y239 953 aa9.52□□□□□ -0.89
CCDC171-207ENST00000478913 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.51□□□□□ -0.89
CCDC171-207ENST00000478913 C11orf95C9JLR9 678 aaPredicted RBP9.51□□□□□ -0.89
CCDC171-207ENST00000478913 ZIC2O95409 532 aaPredicted RBP9.51□□□□□ -0.89
CCDC171-207ENST00000478913 AVPP01185 164 aa9.51□□□□□ -0.89
CCDC171-207ENST00000478913 ERVK-9P63128 1117 aa9.51□□□□□ -0.89
CCDC171-207ENST00000478913 CC2D2BQ6DHV5 1058 aa9.51□□□□□ -0.89
CCDC171-207ENST00000478913 PBXIP1Q96AQ6 731 aa9.51□□□□□ -0.89
CCDC171-207ENST00000478913 SCTRP47872 440 aa9.5□□□□□ -0.89
CCDC171-207ENST00000478913 ITPKCQ96DU7 683 aa9.5□□□□□ -0.89
CCDC171-207ENST00000478913 VRTNQ9H8Y1 702 aa9.5□□□□□ -0.89
CCDC171-207ENST00000478913 MKRN1Q9UHC7 482 aaKnown RBP9.5□□□□□ -0.89
CCDC171-207ENST00000478913 ATP5J2-PTCD1G3V325 749 aa9.49□□□□□ -0.89
CCDC171-207ENST00000478913 TIMP2P16035 220 aa9.49□□□□□ -0.89
CCDC171-207ENST00000478913 TRIM50Q86XT4 487 aa9.49□□□□□ -0.89
CCDC171-207ENST00000478913 PPP1R15AO75807 674 aaPredicted RBP9.48□□□□□ -0.89
CCDC171-207ENST00000478913 CDCA8Q53HL2 280 aa9.48□□□□□ -0.89
CCDC171-207ENST00000478913 KANK4Q5T7N3 995 aaPredicted RBP9.48□□□□□ -0.89
CCDC171-207ENST00000478913 KLF16Q9BXK1 252 aaPredicted RBP9.48□□□□□ -0.89
CCDC171-207ENST00000478913 ZFAND3Q9H8U3 227 aa9.48□□□□□ -0.89
CCDC171-207ENST00000478913 LILRA1O75019 489 aa9.47□□□□□ -0.89
CCDC171-207ENST00000478913 ATP1A2P50993 1020 aa9.47□□□□□ -0.89
CCDC171-207ENST00000478913 GTF2IP78347 998 aa9.47□□□□□ -0.89
CCDC171-207ENST00000478913 SPATA31D1Q6ZQQ2 1576 aa9.46□□□□□ -0.89
CCDC171-207ENST00000478913 LORP23490 312 aaPredicted RBP9.46□□□□□ -0.9
CCDC171-207ENST00000478913 CYP2U1Q7Z449 544 aa9.46□□□□□ -0.9
CCDC171-207ENST00000478913 OSBPL3Q9H4L5 887 aa9.46□□□□□ -0.9
CCDC171-207ENST00000478913 AXIN1O15169 862 aa9.45□□□□□ -0.9
CCDC171-207ENST00000478913 CAPN5O15484 640 aaPredicted RBP9.45□□□□□ -0.9
CCDC171-207ENST00000478913 SNRPBP14678 240 aaKnown RBP9.45□□□□□ -0.9
CCDC171-207ENST00000478913 RASA1P20936 1047 aa9.45□□□□□ -0.9
CCDC171-207ENST00000478913 ADD1P35611 737 aaKnown RBP9.45□□□□□ -0.9
CCDC171-207ENST00000478913 SRPK2P78362 688 aaKnown RBP9.45□□□□□ -0.9
CCDC171-207ENST00000478913 PSME1Q06323 249 aa9.45□□□□□ -0.9
CCDC171-207ENST00000478913 CBLBQ13191 982 aa9.45□□□□□ -0.9
CCDC171-207ENST00000478913 LARP1Q6PKG0 1096 aaKnown RBP9.45□□□□□ -0.9
CCDC171-207ENST00000478913 OGFOD1Q8N543 542 aa9.45□□□□□ -0.9
CCDC171-207ENST00000478913 FAM196BA6NMK8 535 aa9.44□□□□□ -0.9
CCDC171-207ENST00000478913 ADH1AP07327 375 aa9.44□□□□□ -0.9
CCDC171-207ENST00000478913 DNAAF2Q9NVR5 837 aaKnown RBP9.44□□□□□ -0.9
CCDC171-207ENST00000478913 ACIN1Q9UKV3 1341 aaKnown RBP9.43□□□□□ -0.9
CCDC171-207ENST00000478913 USP17L15C9J2P7 530 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 USP17L10C9JJH3 530 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 USP17L13C9JLJ4 530 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 USP17L12C9JPN9 530 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 USP17L11C9JVI0 530 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 USP17L21D6R901 530 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 USP17L18D6R9N7 530 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 USP17L22D6RA61 530 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 USP17L17D6RBQ6 530 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 USP17L19D6RCP7 530 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 USP17L20D6RJB6 530 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 CLDN10P78369 228 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 USP17L24Q0WX57 530 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 CRTC2Q53ET0 693 aaPredicted RBP9.43□□□□□ -0.9
CCDC171-207ENST00000478913 Q6ZVU0 165 aa9.43□□□□□ -0.9
CCDC171-207ENST00000478913 ZNF594Q96JF6 807 aaPredicted RBP9.43□□□□□ -0.9
CCDC171-207ENST00000478913 TERTO14746 1132 aaKnown RBP9.42□□□□□ -0.9
CCDC171-207ENST00000478913 CTC1Q2NKJ3 1217 aa9.42□□□□□ -0.9
CCDC171-207ENST00000478913 MEIOBQ8N635 442 aa9.42□□□□□ -0.9
CCDC171-207ENST00000478913 PCDHGA11Q9Y5H2 935 aa9.42□□□□□ -0.9
CCDC171-207ENST00000478913 ATG7O95352 703 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms