RNA–Protein interactions for RNA: ENST00000478913.1

CCDC171-207, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-207ENST00000478913 AEBP2Q6ZN18 517 aaPredicted RBP27.26■■□□□ 1.95
CCDC171-207ENST00000478913 CHIC1Q5VXU3 224 aa25.17■■□□□ 1.62
CCDC171-207ENST00000478913 SENP3Q9H4L4 574 aaPredicted RBP23.1■■□□□ 1.29
CCDC171-207ENST00000478913 PHF23Q9BUL5 403 aaPredicted RBP22.81■■□□□ 1.24
CCDC171-207ENST00000478913 FOXD1Q16676 465 aa21.79■■□□□ 1.08
CCDC171-207ENST00000478913 POTEDQ86YR6 584 aa21.34■■□□□ 1.01
CCDC171-207ENST00000478913 MSH5O43196 834 aa20.45■□□□□ 0.86
CCDC171-207ENST00000478913 PIAS4Q8N2W9 510 aaPredicted RBP20.09■□□□□ 0.81
CCDC171-207ENST00000478913 PPP6R1Q9UPN7 881 aa19.93■□□□□ 0.78
CCDC171-207ENST00000478913 PLPPR3Q6T4P5 718 aa19.9■□□□□ 0.78
CCDC171-207ENST00000478913 ADRA2BP18089 450 aa19.76■□□□□ 0.75
CCDC171-207ENST00000478913 MAPK8IP2Q13387 824 aaPredicted RBP18.42■□□□□ 0.54
CCDC171-207ENST00000478913 DMRT2Q9Y5R5 561 aa18.28■□□□□ 0.52
CCDC171-207ENST00000478913 CACNB1Q02641 598 aaPredicted RBP18.03■□□□□ 0.48
CCDC171-207ENST00000478913 SCAF1Q9H7N4 1312 aaKnown RBP17.78■□□□□ 0.44
CCDC171-207ENST00000478913 PPP4R3CPQ6ZMV5 832 aa17.54■□□□□ 0.4
CCDC171-207ENST00000478913 DCAF8L1A6NGE4 600 aa17.51■□□□□ 0.39
CCDC171-207ENST00000478913 RNF39Q9H2S5 420 aa17.51■□□□□ 0.39
CCDC171-207ENST00000478913 KCNA4P22459 653 aa17.36■□□□□ 0.37
CCDC171-207ENST00000478913 HOXD11P31277 338 aaPredicted RBP17.35■□□□□ 0.37
CCDC171-207ENST00000478913 NCBP3Q53F19 620 aaKnown RBP17.17■□□□□ 0.34
CCDC171-207ENST00000478913 C1QBPQ07021 282 aaKnown RBP17.1■□□□□ 0.33
CCDC171-207ENST00000478913 CNKSR2Q8WXI2 1034 aa17.02■□□□□ 0.32
CCDC171-207ENST00000478913 RNF216Q9NWF9 866 aaPredicted RBP16.97■□□□□ 0.31
CCDC171-207ENST00000478913 NPM3O75607 178 aaKnown RBP16.89■□□□□ 0.29
CCDC171-207ENST00000478913 DNAJC5BQ9UF47 199 aa16.76■□□□□ 0.27
CCDC171-207ENST00000478913 SLC4A1APQ9BWU0 796 aaKnown RBP16.6■□□□□ 0.25
CCDC171-207ENST00000478913 POTEHQ6S545 545 aa16.52■□□□□ 0.24
CCDC171-207ENST00000478913 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.43■□□□□ 0.22
CCDC171-207ENST00000478913 EHMT2Q96KQ7 1210 aa16.37■□□□□ 0.21
CCDC171-207ENST00000478913 DSG3P32926 999 aa16.19■□□□□ 0.18
CCDC171-207ENST00000478913 SPINK5Q9NQ38 1064 aaPredicted RBP16.17■□□□□ 0.18
CCDC171-207ENST00000478913 U3KPZ7 1027 aaPredicted RBP16.16■□□□□ 0.18
CCDC171-207ENST00000478913 CSRNP3Q8WYN3 585 aa16.04■□□□□ 0.16
CCDC171-207ENST00000478913 CAPN15O75808 1086 aa16.02■□□□□ 0.16
CCDC171-207ENST00000478913 ZBTB22O15209 634 aa15.96■□□□□ 0.15
CCDC171-207ENST00000478913 FOXD4L1Q9NU39 408 aa15.95■□□□□ 0.14
CCDC171-207ENST00000478913 SLC4A2P04920 1241 aa15.88■□□□□ 0.13
CCDC171-207ENST00000478913 ABCB7O75027 752 aa15.7■□□□□ 0.1
CCDC171-207ENST00000478913 TRHP20396 242 aaPredicted RBP15.63■□□□□ 0.09
CCDC171-207ENST00000478913 MYCNP04198 464 aaPredicted RBP15.62■□□□□ 0.09
CCDC171-207ENST00000478913 ZNF219Q9P2Y4 722 aaPredicted RBP15.46■□□□□ 0.07
CCDC171-207ENST00000478913 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.41■□□□□ 0.06
CCDC171-207ENST00000478913 HNRNPUL2Q1KMD3 747 aaKnown RBP15.41■□□□□ 0.06
CCDC171-207ENST00000478913 SAMD1Q6SPF0 538 aaPredicted RBP15.36■□□□□ 0.05
CCDC171-207ENST00000478913 ATXN8OSP0DMR3 200 aa15.35■□□□□ 0.05
CCDC171-207ENST00000478913 CHRDL2Q6WN34 429 aa15.34■□□□□ 0.05
CCDC171-207ENST00000478913 APLP2Q06481 763 aa15.28■□□□□ 0.04
CCDC171-207ENST00000478913 RBM42Q9BTD8 480 aaKnown RBP15.25■□□□□ 0.03
CCDC171-207ENST00000478913 ATF5Q9Y2D1 282 aaPredicted RBP15.15■□□□□ 0.02
CCDC171-207ENST00000478913 SP7Q8TDD2 431 aaPredicted RBP15.14■□□□□ 0.01
CCDC171-207ENST00000478913 POLA2Q14181 598 aa15.07■□□□□ 0
CCDC171-207ENST00000478913 PIP4P2Q8N4L2 257 aa14.88□□□□□ -0.03
CCDC171-207ENST00000478913 AKT1S1Q96B36 256 aa14.84□□□□□ -0.03
CCDC171-207ENST00000478913 REM2Q8IYK8 340 aaPredicted RBP14.79□□□□□ -0.04
CCDC171-207ENST00000478913 HAX1O00165 279 aa14.71□□□□□ -0.05
CCDC171-207ENST00000478913 EVX2Q03828 476 aa14.71□□□□□ -0.05
CCDC171-207ENST00000478913 PITPNM1O00562 1244 aa14.67□□□□□ -0.06
CCDC171-207ENST00000478913 FXR2P51116 673 aaKnown RBP eCLIP14.66□□□□□ -0.06
CCDC171-207ENST00000478913 OSCARQ8IYS5 282 aa14.66□□□□□ -0.06
CCDC171-207ENST00000478913 FBLN2P98095 1184 aa14.57□□□□□ -0.08
CCDC171-207ENST00000478913 FKBP8Q14318 412 aa14.54□□□□□ -0.08
CCDC171-207ENST00000478913 ZBTB12Q9Y330 459 aaPredicted RBP14.53□□□□□ -0.08
CCDC171-207ENST00000478913 MKRN4PQ13434 485 aaPredicted RBP14.5□□□□□ -0.09
CCDC171-207ENST00000478913 SPDYE4A6NLX3 237 aa14.32□□□□□ -0.12
CCDC171-207ENST00000478913 PRKAR2AP13861 404 aaKnown RBP14.23□□□□□ -0.13
CCDC171-207ENST00000478913 C19orf67A6NJJ6 358 aa14.22□□□□□ -0.13
CCDC171-207ENST00000478913 GABBR2O75899 941 aa14.19□□□□□ -0.14
CCDC171-207ENST00000478913 LHX8Q68G74 356 aa14.19□□□□□ -0.14
CCDC171-207ENST00000478913 SPDYE2BA6NHP3 402 aa14.14□□□□□ -0.15
CCDC171-207ENST00000478913 SPDYE6P0CI01 402 aa14.14□□□□□ -0.15
CCDC171-207ENST00000478913 SPDYE2Q495Y8 402 aa14.14□□□□□ -0.15
CCDC171-207ENST00000478913 ZNF692Q9BU19 519 aaPredicted RBP14.12□□□□□ -0.15
CCDC171-207ENST00000478913 CLEC11AQ9Y240 323 aa14.09□□□□□ -0.15
CCDC171-207ENST00000478913 PROM2Q8N271 834 aa14.06□□□□□ -0.16
CCDC171-207ENST00000478913 SSUH2Q9Y2M2 353 aa14.03□□□□□ -0.16
CCDC171-207ENST00000478913 CHADLQ6NUI6 762 aa14.02□□□□□ -0.17
CCDC171-207ENST00000478913 SPDYE1Q8NFV5 336 aaPredicted RBP14.01□□□□□ -0.17
CCDC171-207ENST00000478913 POTEIP0CG38 1075 aa14□□□□□ -0.17
CCDC171-207ENST00000478913 FBXO3Q9UK99 471 aa13.97□□□□□ -0.17
CCDC171-207ENST00000478913 PABPN1Q86U42 306 aaKnown RBP eCLIP13.94□□□□□ -0.18
CCDC171-207ENST00000478913 PLSCR2Q9NRY7 297 aa13.86□□□□□ -0.19
CCDC171-207ENST00000478913 VASPP50552 380 aaPredicted RBP13.76□□□□□ -0.21
CCDC171-207ENST00000478913 STAG3Q9UJ98 1225 aa13.76□□□□□ -0.21
CCDC171-207ENST00000478913 CD44P16070 742 aaKnown RBP13.72□□□□□ -0.21
CCDC171-207ENST00000478913 PRR29P0C7W0 189 aa13.71□□□□□ -0.21
CCDC171-207ENST00000478913 FARP1Q9Y4F1 1045 aaPredicted RBP13.64□□□□□ -0.23
CCDC171-207ENST00000478913 AMER1Q5JTC6 1135 aaPredicted RBP13.61□□□□□ -0.23
CCDC171-207ENST00000478913 PLCD3Q8N3E9 789 aa13.58□□□□□ -0.24
CCDC171-207ENST00000478913 IFNLR1Q8IU57 520 aaPredicted RBP13.56□□□□□ -0.24
CCDC171-207ENST00000478913 MIER1Q8N108 512 aa13.56□□□□□ -0.24
CCDC171-207ENST00000478913 POTEB2H3BUK9 544 aa13.55□□□□□ -0.24
CCDC171-207ENST00000478913 OTUD5Q96G74 571 aa13.55□□□□□ -0.24
CCDC171-207ENST00000478913 RTN4Q9NQC3 1192 aaKnown RBP13.55□□□□□ -0.24
CCDC171-207ENST00000478913 DCBLD2Q96PD2 775 aa13.53□□□□□ -0.24
CCDC171-207ENST00000478913 PLEKHG5O94827 1062 aa13.52□□□□□ -0.25
CCDC171-207ENST00000478913 KLHL34Q8N239 644 aa13.5□□□□□ -0.25
CCDC171-207ENST00000478913 ZNF579Q8NAF0 562 aaKnown RBP13.48□□□□□ -0.25
CCDC171-207ENST00000478913 GALR2O43603 387 aaPredicted RBP13.46□□□□□ -0.25
CCDC171-207ENST00000478913 CLCN6P51797 869 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms