RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ABHD8Q96I13 439 aa7.32□□□□□ -1.24
USP4-209ENST00000475873 SLC4A1APQ9BWU0 796 aaKnown RBP7.32□□□□□ -1.24
USP4-209ENST00000475873 PKD1L3Q7Z443 1732 aa7.32□□□□□ -1.24
USP4-209ENST00000475873 N4BP2Q86UW6 1770 aaPredicted RBP7.31□□□□□ -1.24
USP4-209ENST00000475873 RGS19P49795 217 aa7.31□□□□□ -1.24
USP4-209ENST00000475873 PRDM10Q9NQV6 1147 aa7.31□□□□□ -1.24
USP4-209ENST00000475873 CCDC7Q96M83 1385 aa7.31□□□□□ -1.24
USP4-209ENST00000475873 KIF13BQ9NQT8 1826 aa7.3□□□□□ -1.24
USP4-209ENST00000475873 MLLT1Q03111 559 aaPredicted RBP7.3□□□□□ -1.24
USP4-209ENST00000475873 CDK19Q9BWU1 502 aa7.3□□□□□ -1.24
USP4-209ENST00000475873 RRAGCQ9HB90 399 aa7.3□□□□□ -1.24
USP4-209ENST00000475873 CCDC61Q9Y6R9 512 aa7.3□□□□□ -1.24
USP4-209ENST00000475873 NFAT5O94916 1531 aa7.3□□□□□ -1.24
USP4-209ENST00000475873 BRCA1P38398 1863 aaKnown RBP7.3□□□□□ -1.24
USP4-209ENST00000475873 DOT1LQ8TEK3 1739 aa7.3□□□□□ -1.24
USP4-209ENST00000475873 C5P01031 1676 aa7.29□□□□□ -1.24
USP4-209ENST00000475873 TNRC6CQ9HCJ0 1690 aaKnown RBP7.29□□□□□ -1.24
USP4-209ENST00000475873 NLRP6P59044 892 aa7.29□□□□□ -1.24
USP4-209ENST00000475873 C9orf131Q5VYM1 1079 aa7.29□□□□□ -1.24
USP4-209ENST00000475873 C16orf71Q8IYS4 520 aaPredicted RBP7.29□□□□□ -1.24
USP4-209ENST00000475873 SMC1BQ8NDV3 1235 aa7.29□□□□□ -1.24
USP4-209ENST00000475873 TAF1LQ8IZX4 1826 aa7.29□□□□□ -1.24
USP4-209ENST00000475873 CSB-PGBD3P0DP91 1061 aa7.28□□□□□ -1.24
USP4-209ENST00000475873 PRIM1P49642 420 aaKnown RBP7.28□□□□□ -1.24
USP4-209ENST00000475873 CCNL1Q9UK58 526 aaPredicted RBP7.28□□□□□ -1.24
USP4-209ENST00000475873 UBR3Q6ZT12 1888 aa7.28□□□□□ -1.24
USP4-209ENST00000475873 ARHGAP27Q6ZUM4 889 aa7.27□□□□□ -1.25
USP4-209ENST00000475873 MKRN1Q9UHC7 482 aaKnown RBP7.27□□□□□ -1.25
USP4-209ENST00000475873 BCS1LQ9Y276 419 aa7.27□□□□□ -1.25
USP4-209ENST00000475873 SBF1O95248 1867 aa7.27□□□□□ -1.25
USP4-209ENST00000475873 ANKRD36BQ8N2N9 1353 aa7.26□□□□□ -1.25
USP4-209ENST00000475873 PLEKHG2Q9H7P9 1386 aa7.26□□□□□ -1.25
USP4-209ENST00000475873 A0A0G2JLW4 131 aa7.26□□□□□ -1.25
USP4-209ENST00000475873 SOX12O15370 315 aa7.26□□□□□ -1.25
USP4-209ENST00000475873 IL2RBP14784 551 aa7.26□□□□□ -1.25
USP4-209ENST00000475873 LBX1P52954 281 aa7.26□□□□□ -1.25
USP4-209ENST00000475873 ARFGEF1Q9Y6D6 1849 aa7.25□□□□□ -1.25
USP4-209ENST00000475873 CTCFP49711 727 aaPredicted RBP7.25□□□□□ -1.25
USP4-209ENST00000475873 VIRMAQ69YN4 1812 aaKnown RBP7.24□□□□□ -1.25
USP4-209ENST00000475873 C4BP0C0L5 1744 aa7.24□□□□□ -1.25
USP4-209ENST00000475873 POTECB2RU33 542 aa7.24□□□□□ -1.25
USP4-209ENST00000475873 HSPA8P11142 646 aaKnown RBP7.24□□□□□ -1.25
USP4-209ENST00000475873 KCNA3P22001 575 aa7.24□□□□□ -1.25
USP4-209ENST00000475873 DDX54Q8TDD1 881 aaKnown RBP7.24□□□□□ -1.25
USP4-209ENST00000475873 SYTL4Q96C24 671 aaPredicted RBP7.24□□□□□ -1.25
USP4-209ENST00000475873 NLRP2Q9NX02 1062 aa7.24□□□□□ -1.25
USP4-209ENST00000475873 KDM2BQ8NHM5 1336 aa7.24□□□□□ -1.25
USP4-209ENST00000475873 CNTNAP1P78357 1384 aa7.23□□□□□ -1.25
USP4-209ENST00000475873 CCDC85CA6NKD9 419 aa7.23□□□□□ -1.25
USP4-209ENST00000475873 DPEP1P16444 411 aa7.23□□□□□ -1.25
USP4-209ENST00000475873 WBP1LQ9NX94 342 aa7.23□□□□□ -1.25
USP4-209ENST00000475873 RNF181Q9P0P0 153 aa7.23□□□□□ -1.25
USP4-209ENST00000475873 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.22□□□□□ -1.25
USP4-209ENST00000475873 FCHSD2O94868 740 aa7.22□□□□□ -1.25
USP4-209ENST00000475873 PHF14O94880 888 aa7.22□□□□□ -1.25
USP4-209ENST00000475873 KDM6AO15550 1401 aaPredicted RBP7.21□□□□□ -1.25
USP4-209ENST00000475873 MMP10P09238 476 aa7.21□□□□□ -1.26
USP4-209ENST00000475873 POTEIP0CG38 1075 aa7.21□□□□□ -1.26
USP4-209ENST00000475873 POTEJP0CG39 1038 aa7.21□□□□□ -1.26
USP4-209ENST00000475873 VEGFBP49765 207 aa7.21□□□□□ -1.26
USP4-209ENST00000475873 FLAD1Q8NFF5 587 aa7.21□□□□□ -1.26
USP4-209ENST00000475873 DCAF5Q96JK2 942 aa7.21□□□□□ -1.26
USP4-209ENST00000475873 MPHOSPH9Q99550 1183 aa7.21□□□□□ -1.26
USP4-209ENST00000475873 CABP2Q9NPB3 220 aa7.21□□□□□ -1.26
USP4-209ENST00000475873 CREBZFQ9NS37 354 aa7.21□□□□□ -1.26
USP4-209ENST00000475873 CABP1Q9NZU7 370 aa7.21□□□□□ -1.26
USP4-209ENST00000475873 FAM208AQ9UK61 1670 aaKnown RBP7.21□□□□□ -1.26
USP4-209ENST00000475873 USP47Q96K76 1375 aa7.2□□□□□ -1.26
USP4-209ENST00000475873 MAP2P11137 1827 aaKnown RBP7.2□□□□□ -1.26
USP4-209ENST00000475873 TGFB2P61812 414 aa7.2□□□□□ -1.26
USP4-209ENST00000475873 MEGF6O75095 1541 aa7.2□□□□□ -1.26
USP4-209ENST00000475873 TTC21BQ7Z4L5 1316 aa7.2□□□□□ -1.26
USP4-209ENST00000475873 LTN1O94822 1766 aa7.2□□□□□ -1.26
USP4-209ENST00000475873 PALLDQ8WX93 1383 aa7.2□□□□□ -1.26
USP4-209ENST00000475873 NSD3Q9BZ95 1437 aa7.19□□□□□ -1.26
USP4-209ENST00000475873 VEGFAP15692 232 aaPredicted RBP7.19□□□□□ -1.26
USP4-209ENST00000475873 RASSF7Q02833 373 aa7.19□□□□□ -1.26
USP4-209ENST00000475873 KCNH5Q8NCM2 988 aa7.19□□□□□ -1.26
USP4-209ENST00000475873 ANKRD24Q8TF21 1146 aa7.19□□□□□ -1.26
USP4-209ENST00000475873 GLTPD2A6NH11 291 aa7.18□□□□□ -1.26
USP4-209ENST00000475873 PPARGC1BQ86YN6 1023 aaKnown RBP7.18□□□□□ -1.26
USP4-209ENST00000475873 LINC00116Q8NCU8 138 aa7.18□□□□□ -1.26
USP4-209ENST00000475873 KDM2AQ9Y2K7 1162 aa7.18□□□□□ -1.26
USP4-209ENST00000475873 C4AP0C0L4 1744 aa7.18□□□□□ -1.26
USP4-209ENST00000475873 TIAM2Q8IVF5 1701 aa7.18□□□□□ -1.26
USP4-209ENST00000475873 RGPD2P0DJD1 1756 aa7.18□□□□□ -1.26
USP4-209ENST00000475873 SSFA2P28290 1259 aa7.17□□□□□ -1.26
USP4-209ENST00000475873 SRPK2P78362 688 aaKnown RBP7.17□□□□□ -1.26
USP4-209ENST00000475873 AIDAQ96BJ3 306 aa7.17□□□□□ -1.26
USP4-209ENST00000475873 AK7Q96M32 723 aa7.17□□□□□ -1.26
USP4-209ENST00000475873 PASKQ96RG2 1323 aa7.17□□□□□ -1.26
USP4-209ENST00000475873 CCDC88AQ3V6T2 1871 aa7.16□□□□□ -1.26
USP4-209ENST00000475873 THSD7BQ9C0I4 1608 aa7.16□□□□□ -1.26
USP4-209ENST00000475873 ITPK1Q13572 414 aa7.15□□□□□ -1.26
USP4-209ENST00000475873 ZC3H4Q9UPT8 1303 aaKnown RBP7.15□□□□□ -1.26
USP4-209ENST00000475873 LTBP1Q14766 1721 aa7.15□□□□□ -1.27
USP4-209ENST00000475873 ITGB4P16144 1822 aa7.15□□□□□ -1.27
USP4-209ENST00000475873 CHRNA5P30532 468 aa7.14□□□□□ -1.27
USP4-209ENST00000475873 MKI67P46013 3256 aaKnown RBP7.14□□□□□ -1.27
USP4-209ENST00000475873 DALRD3Q5D0E6 543 aaKnown RBP7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms