RNA–Protein interactions for RNA: ENST00000473684.5

TMEM39A-206, Transcript of transmembrane protein 39A, humanhuman

TSL 5

Gene TMEM39A, Length 3,043 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-206ENST00000473684 KANK4Q5T7N3 995 aaPredicted RBP6.69□□□□□ -1.34
TMEM39A-206ENST00000473684 B4GALNT3Q6L9W6 998 aa6.69□□□□□ -1.34
TMEM39A-206ENST00000473684 PDXDC2PQ6P474 469 aa6.69□□□□□ -1.34
TMEM39A-206ENST00000473684 ARMC2Q8NEN0 867 aa6.69□□□□□ -1.34
TMEM39A-206ENST00000473684 GPKOWQ92917 476 aaPredicted RBP eCLIP6.69□□□□□ -1.34
TMEM39A-206ENST00000473684 CEP162Q5TB80 1403 aa6.69□□□□□ -1.34
TMEM39A-206ENST00000473684 BRD1O95696 1058 aa6.68□□□□□ -1.34
TMEM39A-206ENST00000473684 KRTAP3-3Q9BYR6 98 aa6.68□□□□□ -1.34
TMEM39A-206ENST00000473684 KRTAP3-2Q9BYR7 98 aa6.68□□□□□ -1.34
TMEM39A-206ENST00000473684 CARNS1A5YM72 827 aa6.68□□□□□ -1.34
TMEM39A-206ENST00000473684 TMEM88BA6NKF7 163 aa6.68□□□□□ -1.34
TMEM39A-206ENST00000473684 PTK2Q05397 1052 aa6.68□□□□□ -1.34
TMEM39A-206ENST00000473684 NFKBIBQ15653 356 aa6.68□□□□□ -1.34
TMEM39A-206ENST00000473684 DCAF11Q8TEB1 546 aa6.68□□□□□ -1.34
TMEM39A-206ENST00000473684 L1TD1Q5T7N2 865 aaKnown RBP6.68□□□□□ -1.34
TMEM39A-206ENST00000473684 CHMP4BQ9H444 224 aaKnown RBP6.68□□□□□ -1.34
TMEM39A-206ENST00000473684 VRTNQ9H8Y1 702 aa6.68□□□□□ -1.34
TMEM39A-206ENST00000473684 CFAP74Q9C0B2 1584 aa6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 PATL2C9JE40 543 aaKnown RBP6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 TLL1O43897 1013 aa6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 ZPR1O75312 459 aa6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 KCNA1Q09470 495 aa6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 NYAP1Q6ZVC0 841 aa6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 PLEKHM2Q8IWE5 1019 aa6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 SMAP1Q8IYB5 467 aaPredicted RBP6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 FAM174AQ8TBP5 190 aa6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 MAP7D2Q96T17 732 aa6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 CEP126Q9P2H0 1117 aa6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 SOGA1O94964 1423 aa6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 KDM6BO15054 1643 aa6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 ADAMTSL3P82987 1691 aa6.67□□□□□ -1.34
TMEM39A-206ENST00000473684 ADH1BP00325 375 aa6.66□□□□□ -1.34
TMEM39A-206ENST00000473684 NBPF14Q5TI25 921 aa6.66□□□□□ -1.34
TMEM39A-206ENST00000473684 UGGT2Q9NYU1 1516 aa6.66□□□□□ -1.34
TMEM39A-206ENST00000473684 USP17L3A6NCW0 530 aa6.66□□□□□ -1.34
TMEM39A-206ENST00000473684 USP17L4A6NCW7 530 aa6.66□□□□□ -1.34
TMEM39A-206ENST00000473684 MCCD1P59942 119 aaPredicted RBP6.66□□□□□ -1.34
TMEM39A-206ENST00000473684 ELOAQ14241 798 aaKnown RBP6.66□□□□□ -1.34
TMEM39A-206ENST00000473684 USP17L2Q6R6M4 530 aa6.66□□□□□ -1.34
TMEM39A-206ENST00000473684 USP17L1Q7RTZ2 530 aa6.66□□□□□ -1.34
TMEM39A-206ENST00000473684 GZF1Q9H116 711 aaPredicted RBP6.66□□□□□ -1.34
TMEM39A-206ENST00000473684 SKIP12755 728 aa6.66□□□□□ -1.34
TMEM39A-206ENST00000473684 ZNF592Q92610 1267 aa6.66□□□□□ -1.34
TMEM39A-206ENST00000473684 USP17L5A8MUK1 530 aa6.65□□□□□ -1.34
TMEM39A-206ENST00000473684 PHTF2Q8N3S3 785 aa6.65□□□□□ -1.34
TMEM39A-206ENST00000473684 KCTD12Q96CX2 325 aaKnown RBP6.65□□□□□ -1.34
TMEM39A-206ENST00000473684 ARID4BQ4LE39 1312 aaPredicted RBP6.65□□□□□ -1.35
TMEM39A-206ENST00000473684 FTSJ3Q8IY81 847 aaKnown RBP6.65□□□□□ -1.35
TMEM39A-206ENST00000473684 MTRQ99707 1265 aa6.65□□□□□ -1.35
TMEM39A-206ENST00000473684 TNIKQ9UKE5 1360 aa6.64□□□□□ -1.35
TMEM39A-206ENST00000473684 DDX10Q13206 875 aaKnown RBP6.64□□□□□ -1.35
TMEM39A-206ENST00000473684 PTCRAQ6ISU1 281 aaPredicted RBP6.64□□□□□ -1.35
TMEM39A-206ENST00000473684 TEX2Q8IWB9 1127 aa6.64□□□□□ -1.35
TMEM39A-206ENST00000473684 UNC93B1Q9H1C4 597 aa6.64□□□□□ -1.35
TMEM39A-206ENST00000473684 POTEMA6NI47 508 aa6.64□□□□□ -1.35
TMEM39A-206ENST00000473684 HNRNPUQ00839 825 aaKnown RBP eCLIP6.64□□□□□ -1.35
TMEM39A-206ENST00000473684 UTP14CQ5TAP6 766 aaKnown RBP6.64□□□□□ -1.35
TMEM39A-206ENST00000473684 SH3BP5LQ7L8J4 393 aa6.64□□□□□ -1.35
TMEM39A-206ENST00000473684 CHMP4AQ9BY43 222 aa6.64□□□□□ -1.35
TMEM39A-206ENST00000473684 ZMIZ1Q9ULJ6 1067 aa6.64□□□□□ -1.35
TMEM39A-206ENST00000473684 PCDHB9Q9Y5E1 797 aa6.64□□□□□ -1.35
TMEM39A-206ENST00000473684 TCERG1O14776 1098 aaKnown RBP6.63□□□□□ -1.35
TMEM39A-206ENST00000473684 NPM2Q86SE8 214 aaKnown RBP6.63□□□□□ -1.35
TMEM39A-206ENST00000473684 ADAM32Q8TC27 787 aa6.63□□□□□ -1.35
TMEM39A-206ENST00000473684 REREQ9P2R6 1566 aa6.63□□□□□ -1.35
TMEM39A-206ENST00000473684 MAGI3Q5TCQ9 1506 aa6.63□□□□□ -1.35
TMEM39A-206ENST00000473684 SLFNL1Q499Z3 407 aa6.63□□□□□ -1.35
TMEM39A-206ENST00000473684 ARHGAP9Q9BRR9 750 aa6.63□□□□□ -1.35
TMEM39A-206ENST00000473684 CHIC2Q9UKJ5 165 aa6.63□□□□□ -1.35
TMEM39A-206ENST00000473684 TJAP1Q5JTD0 557 aa6.63□□□□□ -1.35
TMEM39A-206ENST00000473684 TMCO4Q5TGY1 634 aa6.63□□□□□ -1.35
TMEM39A-206ENST00000473684 DEPDC4Q8N2C3 294 aa6.63□□□□□ -1.35
TMEM39A-206ENST00000473684 IQSEC2Q5JU85 1478 aa6.62□□□□□ -1.35
TMEM39A-206ENST00000473684 CCDC24Q8N4L8 307 aa6.62□□□□□ -1.35
TMEM39A-206ENST00000473684 RNF135Q8IUD6 432 aa6.62□□□□□ -1.35
TMEM39A-206ENST00000473684 SLC6A16Q9GZN6 736 aa6.62□□□□□ -1.35
TMEM39A-206ENST00000473684 BCCIPQ9P287 314 aaKnown RBP eCLIP6.62□□□□□ -1.35
TMEM39A-206ENST00000473684 PHLDB1Q86UU1 1377 aa6.62□□□□□ -1.35
TMEM39A-206ENST00000473684 FAM196BA6NMK8 535 aa6.61□□□□□ -1.35
TMEM39A-206ENST00000473684 TMEM164Q5U3C3 297 aa6.61□□□□□ -1.35
TMEM39A-206ENST00000473684 SH3RF1Q7Z6J0 888 aa6.61□□□□□ -1.35
TMEM39A-206ENST00000473684 PLPP7Q8NBV4 271 aa6.61□□□□□ -1.35
TMEM39A-206ENST00000473684 STK32AQ8WU08 396 aa6.61□□□□□ -1.35
TMEM39A-206ENST00000473684 ZNF516Q92618 1163 aa6.61□□□□□ -1.35
TMEM39A-206ENST00000473684 IL21Q9HBE4 155 aa6.61□□□□□ -1.35
TMEM39A-206ENST00000473684 NOVA2Q9UNW9 492 aaKnown RBP6.61□□□□□ -1.35
TMEM39A-206ENST00000473684 ABCA9Q8IUA7 1624 aa6.61□□□□□ -1.35
TMEM39A-206ENST00000473684 LZTS3O60299 673 aaPredicted RBP6.61□□□□□ -1.35
TMEM39A-206ENST00000473684 NCOA4Q13772 614 aa6.61□□□□□ -1.35
TMEM39A-206ENST00000473684 MKRN1Q9UHC7 482 aaKnown RBP6.61□□□□□ -1.35
TMEM39A-206ENST00000473684 PLB1Q6P1J6 1458 aa6.61□□□□□ -1.35
TMEM39A-206ENST00000473684 MTERF4Q7Z6M4 381 aaKnown RBP6.6□□□□□ -1.35
TMEM39A-206ENST00000473684 ZBTB33Q86T24 672 aa6.6□□□□□ -1.35
TMEM39A-206ENST00000473684 ZCCHC11Q5TAX3 1644 aaKnown RBP6.6□□□□□ -1.35
TMEM39A-206ENST00000473684 ZMYM4Q5VZL5 1548 aa6.6□□□□□ -1.35
TMEM39A-206ENST00000473684 ARAP3Q8WWN8 1544 aa6.6□□□□□ -1.35
TMEM39A-206ENST00000473684 AQRO60306 1485 aaKnown RBP eCLIP6.6□□□□□ -1.353e-6■■■□□ 14.6
TMEM39A-206ENST00000473684 TEX14Q8IWB6 1497 aa6.6□□□□□ -1.35
TMEM39A-206ENST00000473684 USP17L15C9J2P7 530 aa6.6□□□□□ -1.35
TMEM39A-206ENST00000473684 USP17L10C9JJH3 530 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms