RNA–Protein interactions for RNA: ENST00000469529.6

TRAF4-208, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-208ENST00000469529 UPF1Q92900 1129 aaKnown RBP eCLIP16.71■□□□□ 0.27
TRAF4-208ENST00000469529 SALL2Q9Y467 1007 aaPredicted RBP16.71■□□□□ 0.27
TRAF4-208ENST00000469529 LMO7Q8WWI1 1683 aa16.71■□□□□ 0.27
TRAF4-208ENST00000469529 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.7■□□□□ 0.26
TRAF4-208ENST00000469529 MTHFSDQ2M296 383 aaKnown RBP16.7■□□□□ 0.26
TRAF4-208ENST00000469529 GJD4Q96KN9 370 aaPredicted RBP16.7■□□□□ 0.26
TRAF4-208ENST00000469529 NLRP2Q9NX02 1062 aa16.7■□□□□ 0.26
TRAF4-208ENST00000469529 RRP7AQ9Y3A4 280 aaKnown RBP16.7■□□□□ 0.26
TRAF4-208ENST00000469529 COL5A2P05997 1499 aaPredicted RBP16.69■□□□□ 0.26
TRAF4-208ENST00000469529 NEUROD2Q15784 382 aa16.69■□□□□ 0.26
TRAF4-208ENST00000469529 PLEKHO1Q53GL0 409 aaPredicted RBP16.69■□□□□ 0.26
TRAF4-208ENST00000469529 CSB-PGBD3P0DP91 1061 aa16.68■□□□□ 0.26
TRAF4-208ENST00000469529 EVA1CP58658 441 aa16.68■□□□□ 0.26
TRAF4-208ENST00000469529 DUSP27Q5VZP5 1158 aa16.68■□□□□ 0.26
TRAF4-208ENST00000469529 CDCA7LQ96GN5 454 aa16.68■□□□□ 0.26
TRAF4-208ENST00000469529 BTG4Q9NY30 223 aa16.68■□□□□ 0.26
TRAF4-208ENST00000469529 PLCH1Q4KWH8 1693 aa16.67■□□□□ 0.26
TRAF4-208ENST00000469529 USHBP1Q8N6Y0 703 aa16.66■□□□□ 0.26
TRAF4-208ENST00000469529 RAPGEF4Q8WZA2 1011 aa16.66■□□□□ 0.26
TRAF4-208ENST00000469529 NWD2Q9ULI1 1742 aa16.66■□□□□ 0.26
TRAF4-208ENST00000469529 COL14A1Q05707 1796 aaKnown RBP16.65■□□□□ 0.26
TRAF4-208ENST00000469529 ZNF853P0CG23 659 aa16.65■□□□□ 0.26
TRAF4-208ENST00000469529 TATP17735 454 aaPredicted RBP16.65■□□□□ 0.26
TRAF4-208ENST00000469529 VPS72Q15906 364 aa16.65■□□□□ 0.26
TRAF4-208ENST00000469529 TOM1L2Q6ZVM7 507 aa16.65■□□□□ 0.26
TRAF4-208ENST00000469529 MYH16Q9H6N6 1097 aa16.65■□□□□ 0.26
TRAF4-208ENST00000469529 SPINK5Q9NQ38 1064 aaPredicted RBP16.65■□□□□ 0.26
TRAF4-208ENST00000469529 BABAM1Q9NWV8 329 aa16.65■□□□□ 0.26
TRAF4-208ENST00000469529 CRB1P82279 1406 aa16.64■□□□□ 0.25
TRAF4-208ENST00000469529 SENP3-EIF4A1A0A087X0R7 540 aa16.64■□□□□ 0.25
TRAF4-208ENST00000469529 GNAT3A8MTJ3 354 aa16.64■□□□□ 0.25
TRAF4-208ENST00000469529 LARP1Q6PKG0 1096 aaKnown RBP16.64■□□□□ 0.25
TRAF4-208ENST00000469529 CCDC9Q9Y3X0 531 aaKnown RBP16.64■□□□□ 0.25
TRAF4-208ENST00000469529 GLI3P10071 1580 aa16.64■□□□□ 0.25
TRAF4-208ENST00000469529 FAM208AQ9UK61 1670 aaKnown RBP16.63■□□□□ 0.25
TRAF4-208ENST00000469529 GNAI1P63096 354 aa16.63■□□□□ 0.25
TRAF4-208ENST00000469529 AKAP4Q5JQC9 854 aa16.63■□□□□ 0.25
TRAF4-208ENST00000469529 CFAP44Q96MT7 982 aa16.63■□□□□ 0.25
TRAF4-208ENST00000469529 IFT57Q9NWB7 429 aa16.63■□□□□ 0.25
TRAF4-208ENST00000469529 SPG7Q9UQ90 795 aa16.63■□□□□ 0.25
TRAF4-208ENST00000469529 THRAP3Q9Y2W1 955 aaKnown RBP16.63■□□□□ 0.25
TRAF4-208ENST00000469529 CT47B1P0C2W7 299 aaPredicted RBP16.62■□□□□ 0.25
TRAF4-208ENST00000469529 RTF1Q92541 710 aaKnown RBP16.62■□□□□ 0.25
TRAF4-208ENST00000469529 CDCA7Q9BWT1 371 aaPredicted RBP16.62■□□□□ 0.25
TRAF4-208ENST00000469529 CHL1O00533 1208 aa16.61■□□□□ 0.25
TRAF4-208ENST00000469529 NRAPQ86VF7 1730 aa16.6■□□□□ 0.25
TRAF4-208ENST00000469529 IL2RBP14784 551 aa16.6■□□□□ 0.25
TRAF4-208ENST00000469529 IL17REQ8NFR9 667 aa16.6■□□□□ 0.25
TRAF4-208ENST00000469529 CEMIPQ8WUJ3 1361 aa16.6■□□□□ 0.25
TRAF4-208ENST00000469529 MAP3K5Q99683 1374 aa16.6■□□□□ 0.25
TRAF4-208ENST00000469529 STRN4Q9NRL3 753 aa16.59■□□□□ 0.25
TRAF4-208ENST00000469529 OVOS2A0A0G2JMS6 1433 aa16.59■□□□□ 0.25
TRAF4-208ENST00000469529 HSP90AB1P08238 724 aaKnown RBP16.58■□□□□ 0.24
TRAF4-208ENST00000469529 NKX1-1Q15270 411 aaPredicted RBP16.58■□□□□ 0.24
TRAF4-208ENST00000469529 ZNF530Q6P9A1 599 aaPredicted RBP16.58■□□□□ 0.24
TRAF4-208ENST00000469529 SEPT12Q8IYM1 358 aa16.58■□□□□ 0.24
TRAF4-208ENST00000469529 IFNL2Q8IZJ0 200 aa16.58■□□□□ 0.24
TRAF4-208ENST00000469529 ZCRB1Q8TBF4 217 aaKnown RBP16.58■□□□□ 0.24
TRAF4-208ENST00000469529 ZNF428Q96B54 188 aa16.58■□□□□ 0.24
TRAF4-208ENST00000469529 SPATA31A1Q5TZJ5 1347 aa16.58■□□□□ 0.24
TRAF4-208ENST00000469529 RNF123Q5XPI4 1314 aa16.58■□□□□ 0.24
TRAF4-208ENST00000469529 RGPD5Q99666 1765 aa16.58■□□□□ 0.24
TRAF4-208ENST00000469529 SPATA31A5Q5VU36 1347 aa16.57■□□□□ 0.24
TRAF4-208ENST00000469529 SPATA31A7Q8IWB4 1347 aa16.57■□□□□ 0.24
TRAF4-208ENST00000469529 ONECUT3O60422 494 aaPredicted RBP16.57■□□□□ 0.24
TRAF4-208ENST00000469529 C1orf141Q5JVX7 400 aa16.57■□□□□ 0.24
TRAF4-208ENST00000469529 BARGINQ6ZT62 677 aa16.57■□□□□ 0.24
TRAF4-208ENST00000469529 MEGF6O75095 1541 aa16.56■□□□□ 0.24
TRAF4-208ENST00000469529 PHKG2P15735 406 aa16.56■□□□□ 0.24
TRAF4-208ENST00000469529 DISP2A7MBM2 1401 aa16.55■□□□□ 0.24
TRAF4-208ENST00000469529 FANCIQ9NVI1 1328 aa16.55■□□□□ 0.24
TRAF4-208ENST00000469529 RNMTO43148 476 aaKnown RBP16.55■□□□□ 0.24
TRAF4-208ENST00000469529 DCTN1Q14203 1278 aa16.55■□□□□ 0.24
TRAF4-208ENST00000469529 TAF7Q15545 349 aaPredicted RBP16.55■□□□□ 0.24
TRAF4-208ENST00000469529 MCM10Q7L590 875 aa16.55■□□□□ 0.24
TRAF4-208ENST00000469529 RCAN3Q9UKA8 241 aa16.55■□□□□ 0.24
TRAF4-208ENST00000469529 A0A0G2JS52 829 aa16.54■□□□□ 0.24
TRAF4-208ENST00000469529 CYP27B1O15528 508 aa16.54■□□□□ 0.24
TRAF4-208ENST00000469529 MYT1Q01538 1121 aa16.54■□□□□ 0.24
TRAF4-208ENST00000469529 FAM98CQ17RN3 349 aaKnown RBP16.54■□□□□ 0.24
TRAF4-208ENST00000469529 DCAF5Q96JK2 942 aa16.54■□□□□ 0.24
TRAF4-208ENST00000469529 THUMPD2Q9BTF0 503 aaKnown RBP16.54■□□□□ 0.24
TRAF4-208ENST00000469529 BRWD3Q6RI45 1802 aa16.54■□□□□ 0.24
TRAF4-208ENST00000469529 RGPD2P0DJD1 1756 aa16.54■□□□□ 0.24
TRAF4-208ENST00000469529 PCDH11XQ9BZA7 1347 aa16.53■□□□□ 0.24
TRAF4-208ENST00000469529 PCDH11YQ9BZA8 1340 aa16.53■□□□□ 0.24
TRAF4-208ENST00000469529 LGR6Q9HBX8 967 aa16.53■□□□□ 0.24
TRAF4-208ENST00000469529 MBIPQ9NS73 344 aa16.53■□□□□ 0.24
TRAF4-208ENST00000469529 SOS1Q07889 1333 aaPredicted RBP16.52■□□□□ 0.24
TRAF4-208ENST00000469529 EXOC5O00471 708 aa16.51■□□□□ 0.23
TRAF4-208ENST00000469529 KRT27Q7Z3Y8 459 aa16.51■□□□□ 0.23
TRAF4-208ENST00000469529 CCDC125Q86Z20 511 aa16.51■□□□□ 0.23
TRAF4-208ENST00000469529 ERVV-2B6SEH9 535 aa16.5■□□□□ 0.23
TRAF4-208ENST00000469529 BRPF1P55201 1214 aaPredicted RBP16.5■□□□□ 0.23
TRAF4-208ENST00000469529 EXOSC9Q06265 439 aaKnown RBP16.5■□□□□ 0.23
TRAF4-208ENST00000469529 MPRIPQ6WCQ1 1025 aa16.5■□□□□ 0.23
TRAF4-208ENST00000469529 TSR2Q969E8 191 aaKnown RBP16.5■□□□□ 0.23
TRAF4-208ENST00000469529 SUPT16HQ9Y5B9 1047 aaKnown RBP16.5■□□□□ 0.23
TRAF4-208ENST00000469529 VAMP4O75379 141 aa16.48■□□□□ 0.23
TRAF4-208ENST00000469529 TEFQ10587 303 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms