RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 AEBP1Q8IUX7 1158 aa20.24■□□□□ 0.83
NPHP4-205ENST00000466897 RAPGEF4Q8WZA2 1011 aa20.24■□□□□ 0.83
NPHP4-205ENST00000466897 RSPH6AQ9H0K4 717 aa20.24■□□□□ 0.83
NPHP4-205ENST00000466897 PNNQ9H307 717 aaKnown RBP20.24■□□□□ 0.83
NPHP4-205ENST00000466897 TNS2Q63HR2 1409 aa20.24■□□□□ 0.83
NPHP4-205ENST00000466897 RXRBP28702 533 aa20.23■□□□□ 0.83
NPHP4-205ENST00000466897 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.23■□□□□ 0.83
NPHP4-205ENST00000466897 HMOX1P09601 288 aa20.22■□□□□ 0.83
NPHP4-205ENST00000466897 TATP17735 454 aaPredicted RBP20.22■□□□□ 0.83
NPHP4-205ENST00000466897 VIRMAQ69YN4 1812 aaKnown RBP20.22■□□□□ 0.83
NPHP4-205ENST00000466897 FAM98CQ17RN3 349 aaKnown RBP20.21■□□□□ 0.83
NPHP4-205ENST00000466897 DLG5Q8TDM6 1919 aa20.21■□□□□ 0.83
NPHP4-205ENST00000466897 ADAMTS8Q9UP79 889 aa20.2■□□□□ 0.82
NPHP4-205ENST00000466897 PLEKHF1Q96S99 279 aa20.19■□□□□ 0.82
NPHP4-205ENST00000466897 RGS12O14924 1447 aa20.19■□□□□ 0.82
NPHP4-205ENST00000466897 PRKAR2BP31323 418 aa20.18■□□□□ 0.82
NPHP4-205ENST00000466897 AMOTQ4VCS5 1084 aa20.18■□□□□ 0.82
NPHP4-205ENST00000466897 ADAMTS7Q9UKP4 1686 aa20.16■□□□□ 0.82
NPHP4-205ENST00000466897 DDB1Q16531 1140 aa20.16■□□□□ 0.82
NPHP4-205ENST00000466897 PLEKHO1Q53GL0 409 aaPredicted RBP20.16■□□□□ 0.82
NPHP4-205ENST00000466897 SPG7Q9UQ90 795 aa20.16■□□□□ 0.82
NPHP4-205ENST00000466897 EXOC5O00471 708 aa20.15■□□□□ 0.82
NPHP4-205ENST00000466897 NEFMP07197 916 aa20.15■□□□□ 0.82
NPHP4-205ENST00000466897 SEPT12Q8IYM1 358 aa20.15■□□□□ 0.82
NPHP4-205ENST00000466897 ZCRB1Q8TBF4 217 aaKnown RBP20.15■□□□□ 0.82
NPHP4-205ENST00000466897 RUNDC1Q96C34 613 aa20.15■□□□□ 0.82
NPHP4-205ENST00000466897 PCDH11XQ9BZA7 1347 aa20.15■□□□□ 0.82
NPHP4-205ENST00000466897 PCDH11YQ9BZA8 1340 aa20.15■□□□□ 0.82
NPHP4-205ENST00000466897 SCN11AQ9UI33 1791 aa20.15■□□□□ 0.82
NPHP4-205ENST00000466897 MAPK8IP3Q9UPT6 1336 aa20.14■□□□□ 0.81
NPHP4-205ENST00000466897 BCL9O00512 1426 aa20.13■□□□□ 0.81
NPHP4-205ENST00000466897 GAS2L2Q8NHY3 880 aa20.13■□□□□ 0.81
NPHP4-205ENST00000466897 SBF2Q86WG5 1849 aa20.13■□□□□ 0.81
NPHP4-205ENST00000466897 FAM9BQ8IZU0 186 aa20.12■□□□□ 0.81
NPHP4-205ENST00000466897 PHACTR3Q96KR7 559 aa20.12■□□□□ 0.81
NPHP4-205ENST00000466897 DOT1LQ8TEK3 1739 aa20.1■□□□□ 0.81
NPHP4-205ENST00000466897 TOGARAM1Q9Y4F4 1720 aa20.1■□□□□ 0.81
NPHP4-205ENST00000466897 A0A0G2JS52 829 aa20.1■□□□□ 0.81
NPHP4-205ENST00000466897 MYT1Q01538 1121 aa20.1■□□□□ 0.81
NPHP4-205ENST00000466897 MTHFSDQ2M296 383 aaKnown RBP20.1■□□□□ 0.81
NPHP4-205ENST00000466897 CYP27B1O15528 508 aa20.09■□□□□ 0.81
NPHP4-205ENST00000466897 PDE3BQ13370 1112 aa20.09■□□□□ 0.81
NPHP4-205ENST00000466897 NKX1-1Q15270 411 aaPredicted RBP20.09■□□□□ 0.81
NPHP4-205ENST00000466897 NCBP3Q53F19 620 aaKnown RBP20.09■□□□□ 0.81
NPHP4-205ENST00000466897 AKAP4Q5JQC9 854 aa20.09■□□□□ 0.81
NPHP4-205ENST00000466897 IFNL2Q8IZJ0 200 aa20.09■□□□□ 0.81
NPHP4-205ENST00000466897 ITGB4P16144 1822 aa20.09■□□□□ 0.81
NPHP4-205ENST00000466897 PHKG2P15735 406 aa20.08■□□□□ 0.81
NPHP4-205ENST00000466897 NFE2L2Q16236 605 aa20.08■□□□□ 0.81
NPHP4-205ENST00000466897 ZNF530Q6P9A1 599 aaPredicted RBP20.08■□□□□ 0.81
NPHP4-205ENST00000466897 CCDC146Q8IYE0 955 aa20.08■□□□□ 0.81
NPHP4-205ENST00000466897 SIPA1L3O60292 1781 aaPredicted RBP20.08■□□□□ 0.8
NPHP4-205ENST00000466897 MAP3K5Q99683 1374 aa20.08■□□□□ 0.8
NPHP4-205ENST00000466897 NHSQ6T4R5 1651 aa20.07■□□□□ 0.8
NPHP4-205ENST00000466897 HSP90AB1P08238 724 aaKnown RBP20.07■□□□□ 0.8
NPHP4-205ENST00000466897 C1orf141Q5JVX7 400 aa20.07■□□□□ 0.8
NPHP4-205ENST00000466897 KRT27Q7Z3Y8 459 aa20.07■□□□□ 0.8
NPHP4-205ENST00000466897 HTATSF1O43719 755 aaKnown RBP20.06■□□□□ 0.8
NPHP4-205ENST00000466897 MARCH10Q8NA82 808 aaPredicted RBP20.06■□□□□ 0.8
NPHP4-205ENST00000466897 MRC1P22897 1456 aa20.05■□□□□ 0.8
NPHP4-205ENST00000466897 TMPOP42166 694 aaKnown RBP20.05■□□□□ 0.8
NPHP4-205ENST00000466897 NGEFQ8N5V2 710 aa20.05■□□□□ 0.8
NPHP4-205ENST00000466897 DDX54Q8TDD1 881 aaKnown RBP20.05■□□□□ 0.8
NPHP4-205ENST00000466897 KDM6AO15550 1401 aaPredicted RBP20.04■□□□□ 0.8
NPHP4-205ENST00000466897 GNAT3A8MTJ3 354 aa20.04■□□□□ 0.8
NPHP4-205ENST00000466897 APAF1O14727 1248 aa20.03■□□□□ 0.8
NPHP4-205ENST00000466897 LMOD3Q0VAK6 560 aa20.03■□□□□ 0.8
NPHP4-205ENST00000466897 DCAF5Q96JK2 942 aa20.03■□□□□ 0.8
NPHP4-205ENST00000466897 CEMIPQ8WUJ3 1361 aa20.02■□□□□ 0.8
NPHP4-205ENST00000466897 EP400Q96L91 3159 aa20.01■□□□□ 0.79
NPHP4-205ENST00000466897 FAM196AQ6ZSG2 479 aa20.01■□□□□ 0.79
NPHP4-205ENST00000466897 KAT6BQ8WYB5 2073 aa20.01■□□□□ 0.79
NPHP4-205ENST00000466897 RIPK4P57078 832 aa20■□□□□ 0.79
NPHP4-205ENST00000466897 CCDC27Q2M243 656 aa20■□□□□ 0.79
NPHP4-205ENST00000466897 TNS1Q9HBL0 1735 aaKnown RBP19.99■□□□□ 0.79
NPHP4-205ENST00000466897 PAPPAQ13219 1627 aa19.99■□□□□ 0.79
NPHP4-205ENST00000466897 BTAF1O14981 1849 aa19.99■□□□□ 0.79
NPHP4-205ENST00000466897 ERVV-2B6SEH9 535 aa19.98■□□□□ 0.79
NPHP4-205ENST00000466897 RTF1Q92541 710 aaKnown RBP19.98■□□□□ 0.79
NPHP4-205ENST00000466897 UPF1Q92900 1129 aaKnown RBP eCLIP19.98■□□□□ 0.79
NPHP4-205ENST00000466897 RNMTO43148 476 aaKnown RBP19.97■□□□□ 0.79
NPHP4-205ENST00000466897 TRIM35Q9UPQ4 493 aa19.97■□□□□ 0.79
NPHP4-205ENST00000466897 RGPD3A6NKT7 1758 aaPredicted RBP19.96■□□□□ 0.79
NPHP4-205ENST00000466897 RGPD4Q7Z3J3 1758 aa19.96■□□□□ 0.79
NPHP4-205ENST00000466897 MPRIPQ6WCQ1 1025 aa19.96■□□□□ 0.79
NPHP4-205ENST00000466897 IL17REQ8NFR9 667 aa19.96■□□□□ 0.79
NPHP4-205ENST00000466897 RRP7AQ9Y3A4 280 aaKnown RBP19.96■□□□□ 0.79
NPHP4-205ENST00000466897 KDM3BQ7LBC6 1761 aa19.95■□□□□ 0.78
NPHP4-205ENST00000466897 UBR2Q8IWV8 1755 aa19.95■□□□□ 0.78
NPHP4-205ENST00000466897 NEUROD2Q15784 382 aa19.94■□□□□ 0.78
NPHP4-205ENST00000466897 LGR6Q9HBX8 967 aa19.94■□□□□ 0.78
NPHP4-205ENST00000466897 FAM182BQ5T319 152 aa19.93■□□□□ 0.78
NPHP4-205ENST00000466897 MCM10Q7L590 875 aa19.93■□□□□ 0.78
NPHP4-205ENST00000466897 SLC52A2Q9HAB3 445 aa19.93■□□□□ 0.78
NPHP4-205ENST00000466897 ZNF831Q5JPB2 1677 aa19.92■□□□□ 0.78
NPHP4-205ENST00000466897 CALD1Q05682 793 aaKnown RBP19.92■□□□□ 0.78
NPHP4-205ENST00000466897 WWC1Q8IX03 1113 aa19.92■□□□□ 0.78
NPHP4-205ENST00000466897 LY75O60449 1722 aa19.92■□□□□ 0.78
NPHP4-205ENST00000466897 ZNF521Q96K83 1311 aa19.91■□□□□ 0.78
NPHP4-205ENST00000466897 CICQ96RK0 1608 aaPredicted RBP19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms